Cucsat.G20726 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G20726
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	COP9 signalosome complex subunit 6
Location	ctg62: 1396773 .. 1408399 (+)
RNA-Seq Expression	Cucsat.G20726
Synteny	Cucsat.G20726

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CATATATATATAAAACCTGCATGAGTGACAAATGGTAAAGTTTCGAAGGCTACGGAAACTTTCCATTCAGAAAGTTGGGAGATTGGTGAAAAAAAGAGTATGGATGAAAATTGAAGAACCAACTTGAAGATTTCAACAGACAGTGTTGAATCTGCTCTAATCTGTTCCATTCTCCCTGATCTTGAATTTTTAGGTTAACCAAACCTTGGATCATCGATCGTTTGTTCCTAGTTGCAATCGATCATGGCGTCGTCTGGCAGCGGGTTGACATTCAAGTTGCACCCCCTTGTGATTGTAAACATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCGTCCTTGAGCTGCTCAGCTGCATCTCCTTGCGCCCTAAGTAATGGCGCCGATGCACCCGATTCTACCGACCCTTCAACTTCTCCTCCCGCACCTAGGGTTTTCGGTTGTGTTGTTGGAGTTCAAAGGGGCCGCACGGTTGAGATCTTCAACAGCTTCGAGCTTCTTTATGACCCCAAAACTCACTCACTCGACCGCACCTTCCTTGAGAAGAAGCAAGAACTCTGTTAGTAATTTCGGACATTTCTTTTCATTTCTCTTTCTCTTTTTTGCTTTCTGTTTATTTTATTGTTTATGACGATTGAATTGAGTTGCGCTCTTGTTTGGAGCAGATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCACAAGGCTGTGAGTTACCATTTAAACTGCTATCTTGGCACACAGTTGTTTACAGGATTTTTACATTCTCAAGTATACTGCGCATGTTGAATTTTTAAACGGACTCTTTATCCCTAAAGCATTTTCTTTGCACACCTGAGAATTGGGATTGCTCATTTCCGGGAGTTCTGTAATTTTCTGATAGGTTTCATTCTTTTATATTGGAGTCTTTTCGTGCTTAATTAGGGTTTGGATTCCCTTCGAGGGGCAGGATACTTTTATGTTCTTGTGTTTTCATTCTTCTCGAACTAAGCTTTGGTTTTCATTTTTTTGACCCAAATGCTAATTGAAAGATATCCAATTCTTTTGATGACAAGACAATGTTCATGAAGGAAAAAAAATGGAGGAGTACAAGGGATAAAAAGATTGTATTTACAAAAGGGACTATGATTAGATTGAAGTTTACACCTGGAGACAAAACTTTAACTTTTAGCCTTGAAACTCACACCTCCTTTCAGCCACAAGATGCTTTATCCCTTGTAAAAAACACAATGAGGCTTTAAGTCTTCATGTCTCGTGTAATGATTAGAAGAATAATGTTACCACGGTTTGAAAATATGATGAATGTATTTGTAGCATTTTTTATTAGTTTTCCTTACCAGGCATGCAGGTGTATTAGCGTTAGTTTGACTTCCAACAGCTTTTTGCCTCGAACAATCTTCTTTTTCAACTGTGATCTCTATTTATCAAGAGGGTTTAGAGAGTGACTGGCTTTGAACTAGTTCAATACTCGTTAAATGTAGATGGGATGGGAGGTCTATCTTGGAGAATAGATTTATCGTGTTGTTTGTTAAGAGTTGGATACAAAATTCAAGAACATTGTCACGAGTGAAGCCCAACGTTAACTCCAACAAATATGCTAAAGTTACATTAAGTTATAGAACAAGGTCTCATCCCTTGAATAAAAGAAATTAGTATCATTTGCGTAATGGTCTTGTCATCAATTGTAGAAATTGGAGATGTATCTGGGAGATGGGTTGTTGTGTTGTATTCATTGTTGGAGGGTGGTGGAAGATTTGTGTTAGGCCTCCAATCATTCATACGCACCAAAGAAAGGGTAAATAGGAATAAGAAAAGAATGTTAGTTCATGAAATTAGAGAGCTGGGGACCATCTGTGTTGGGTTTATGGGAGGGGTTTGGAAAATTATTTTGGGTGTGAATATTTTGGAACTCTTGATGCTTATGGGAGAGAAGAGGCAGCTCTCAAATTCTGCTGTTCTTCTTGTATCTTTACTTCTTTATTCTTAACTTGTGTTGTGTTCTTAACTCACTGGAGTGTGGAGACTATATTGTATCATCTGGATACTTCTTTCCAATCTAATATCAACATCAGATCAGTTTGTCTCTGTTATTGTCCTTGTTGGGTATTTTTTTAGTGCAGGGAACTAAATACCTAACCATTTGGATAATTTATTATGGAATTATTGTTTAGCTAAGTTAGTGTGGAACTACTTTTTGGAGGATCTGAAACTTTAGTATTTAAGTAGCCTGTCAAAAAGCTTTTAATGATGTTATGGAGGAGTTATTCCTCCATCTGTCGTTTGAGAGAATTTTTTATGGAAATTTCGGGGGGTGTGTGCCTTGTTATTGGTATTTGGGGTGAGAGAAATAACGTGGTTTTTAGGAGGATTGAGCGAGTTCTTGGATGTTTGGACCCTTGTGGAATTCATGTTTCTCTTTAAGCTTCAGTAACAAATTCCTCTTGTAATTATACACAGTGATTTATTTTGCTAGATTGAAGCTCCCTTTTATCGAGTGCTCTCATTTGTGGGCTTGGGTTTTTTATATGCTCTTGTATTCTTTACTTTTTTTTCTCAATGGAAGTTGGCTTCTATTTAAAAAAGAAAAAGGAGAGGAAGAATTATGCGAGGGAAAAGGAATTTTAAAATTTTAGTAAGTCTAAATTTTTTATTCTTTAGTGCTATAGTCTCTTTGTGTCAGGGCAGAAGAATGCTTCATTCGTAGTCCCCTATCATACCTGCTCTGAAAAATCTACTGAACACTTGAACCCAATCCTTTTCTATGAAATCCTCACTGTTCAGGGAAAAAAGAAAAAAAAAACATTAATTATCTGGCTTACCTTCGTTTGTCTCAACTAAACTCAGCATTTCTAATTTCCTATTGGGTAAAATGTTGTTCAAGTAACTCCCAATTTTCTCCAATTGCCGGGTGAAAATACAAACCAACAACAAATATTCTAGAGATGCATACCCGAGCCAGAAGGTGAATTTGTTTTAGATTTCCTTAATGGTAGAAGAATCTATATTAAAAAGGATTCTAGTTTGTCAAGGTCACTCAAAACTTTTGTAAATTGACCACTCAAATTTCTAACTTTTAGTTAGTTTTATGTATTTTTATTTTGATTGGAACTCCCTCTTTGTCGCCTTTCCAAATTAGTTAATGGTCCAAAAGTCCAGCAAACATTCAAGTGCCTTTAAAATCACAAGTTTGTGGGTTGAGAGAGCCATTGGTGATAGGTTTCACCCCTTGCTTGATAACTTATCCTTAAGGTTGTGCAAAAGGGATTTGCTACAGTTATATTTTATCCCTTTCTGCTGAGGGTTGGGTTGGGGGGGCCTGATGAAGGTAGTGTCATGCCACTCTATTAGCATTGATATTATTAAAAGCAGATGTTTTTCGCGTCTTTACAGTTTGGAAGTTTATTTATCTTCAAGAGTTCCAAATATTTTCATTTTTTATTTATCTGGCTATTATCAAGGAAAGCTCTCAAGGGATAAGACCAATCCTTGCCTAGTTTGAAATCTCAAATACCTTTTATAATTATGCTTTTTCTACAAAAAATAAATAAAAAGTCATGCTTGTTATCTAACTTTAGTTAAAACCAATTGAAGTATCTTTGTTAACTTCCAAGCCTACTTTGGGAGGATAATAACTTGTTTTATGCATTTACCTTTCAATAATGGAATTCAGTTTCTTATGGGATCAAAAGGAAATATATCATTTGATAGATGTAATTTTTTGTTTGGGATGGGAAATTATAATACTACAATTGTACGATAGTTAATTTTGATGATCTTTCTTACTTTAACAGTTGATGGATATCAATGAAAGCCCCGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCAGTTACGATTTACGAGAGTGGTAATATGTCTTGTTTCTTTTCTTCTTAGTTACTTGGTTTTTGTCTGCAGTTCATTTTCTTCCTTATTTGGGCTACCAATAATTTTCTGTGGTTATACTATCCTTCATTTTTCATCACTACTCTAATAATGCCACTTCTTAGGTATAACATCCATGATTTCCTTAAGGGTGTATGCTAGTGCGCATAGTTTAGTTTTCATTTACTCAGGGATTGTCAAATTATTAAGCCCTGTTTTTTACCCTTTTTTAATAATCTTTGTCACATTCTACTATCACGTTGGGAAGCACCAAGAAGTCAATTTCTTTTTTCTTAGATGGTCACAAGTTCAAGGACAAGAACAAAGCTATTGGTGTTGGAGTAAGCAAAAGAGATTGGAAACTGTCCAAGCTTTGGAGAAATCTCATAGGCTGTTTGGGATCTAATTATTTTTGTAGCTTCTACCGAGAGTCTTCCAATTTTTATGAGGCTTTGCTGCCTTTCAACATTTATTTCAATGAAGTAGTTGGAAATAAATCAGGATTTTTTTAAGGATACCTCAATCATGCTAAGTTATTAAAAAGCCTTCCTTTTTTTTTGGTTGAAAGATGCTTATTACATAGCAAGCTGGGAAAATTGTGGACTTGGGAAAGCACATTGGAATGTTAGTTTTCATCGTTTGTTGACTGATGGGGAAACAATCTTGGCCATTTCTCTTCTCTCTTTGATAGGAGAGTTTGTCTTTTGGGAGAAAGGATGCTTTTTTTTTTTGAAATGGAAACGGATATCTTTATTAATATACAAGAGAGACAAGAGCTCAAGTACAAGAGGATTATACAAGAGCTATCAAAAAATTAGGGATCAACAGTTGCACTCGGATATCTTAACTAGGGTGACATCCCATAGCGACCTCATCATATCCAGAAGAACAAAAGCAAAAAGGAGAAAACAATCTTAATACTAACCCATGATAATGGATCTTTACTAGGTCATGACTAATAGAGTTTAGTGCAAAGAAAAGTAACCATAAGAAAGAGAAGAGTGAGAAAAAAACAGAATAAAATAAGAGCAACAGAATTAGGTTGGAAAAATAAAAGCTCTCCAATTTAAGTTGAGATCTTCATCTTGTAGCTTCCGGAAAGATTTGAGATGGTGCACCAGAAGGAGGCATTTCTGTGTGCTATATCAAAATGATCAAAACAGCCTAATGATTTATCATGAAAAACTTTTTGGTTCCTTTCAAACCAAATTTCTGACAAGATAGCTTTCACTGCATTTTCCTAGAGTAGTGTAGCTTCTTTATTCAAGCTGAAGTCTCTTAATAAAACCCTCACATTTTCACCAAAATCTGCTCCAAAGACCCAAGATAGATTAAACTCTTTAAACAGTTTTCCCCAACTGAGGATGGTGTTTCAGAAGTATTAATTCATTGGGAACATGGCTCACCAATCGATGCAATATGGGAACTAGTTTCAGTGATCAACGATCAATTGCTGAATTCCACCTTGAGGACGAGGTGGTTTAGGGTTTAGAGGACGAGGTGGCTCTTTAGGGGGCAGGTAATGATAGGGCCTTGGTCACAAAAGTATATGTAAGGAAGCACACAAAGAAGGGAGGGGATAATATATAAGGGGTAATGTTAGTTTGTGTATGTGGGCCCAAAGGAATATTGTTTGTTAGGGGTCCTCTAGTGAGTCGTTATATAGGGAGTTTGCGTGGAGTAGGGTATTGAAAATGTTGCTAATTGTAATTGTTGTTATTTGAGACCTTGGAGAGTAAGGGAGTTCTCAAATCTTCCCTTGAGCTGTTTTAATTGATAGGTTGAGGCCTATTGTAAACTTCCCAGAGGCATATTTTTTTTCACTTAAGGCAATCATGACTACCTTGAAGTACCTAAGAATTTAAGATTTGGAAAATCACGACCTTATCACTCATCTCTCTTACAAAAAATTTCTATGGCGCCAAATCCCGTGTAGCTAGAATCACACCAACACTCCACATTCTCAATGTTCTTTTTAAAGAAATGGTAAGGATGTTGGGAAATTTCTGTGCTGGATTGAGGATCAGACCAACTATTCACTCTGACTCCGATCCTTTTCCCATCACCTATGACAAACTCAGTGAATTTAGAGAACTTCTCTTTATGCTTAAAAATGCTGTTCCAAATTCTAGACATTCCCTTAGGCAAATTTGAACTCCAGCCATAGACATCGACACCATGGATAGCGTCAATTATGCGTCTCCCAAGTCCCAAGAGCATTTTTTTCATGTCAAAACCTTCAAAGCCATTCCATAAGGAGAGCAATGTTCTTTTGACGAAGGGACCCAATCCCAAGGACACCCTAGATAGTAGGAAGAGTGGCCATATTCCAGTTAACAAGGTGGGAGGTAGTGTCGCAGGTCCCATCATCCCAAACAAAGTCTATAATGATCTCCAGCCAATTTTGTTTGGAGCTTGCACAAGGGAGAAGAAATAGCATGGAAGACGATTGAGGACTAATTGGGATAGAGTCAATCTACCGGCTGCCTCCTTTATAGAGAGATACCCTTCTCCTTTTGTCCTCAAAAGTTTTCCAAACTTCCACAGCATTGTGTTTTCTTCCCATAGGAAAGCCCAAATACATGAATGTGAGTGTTTCCACCTTACACCCAAAGTTTGTGGCAGTAAGCTCGACTTCAGGTTGATTCAATGAGAGAAGTTTAAGAGATATTAAGAGATAACCTCGAACCCAAAAGAAAGAGGTTGACAACGGTCCACCAAGCCAAGAGGTTGCCATCCTCCCAAGAGCAGAGAAGAAGAGTGTCATCAGGATAATGGAGATAGGTTAATTCAGAGGTCATATTGCCAAAAGAGAGGCCTCTGATAATATTGGAATGTTGGTGATATGGAATTTGTTTTTTTCTGGCTATGTAAAATTCTTAAGTTTTTGAGAGTTTCAGAATTTGTTATTCCAGTCAGTAAAGAAATGTATAAATGCAAGTGTACAAGAGTGAACAAAAAAGAAAATGGCGTAAAAGGAAAATATAACAAATATATAATAAAATATCTCTTATATTAGAACTATAACATGCTATACTACTACTAGAAAATATTTGCAAACTAAATCACGAGGTCTTTTTAGATCTCTGGCTTACTAATTTGTTGCACTAATCACTCGGTCCACCCAATTTTACCTTGTTTTTTCATCTCATTCTCAATTTGTCACATGCATATGATAGCATGTGGCATGTCACAACGTTTTGCCCAGTCATATGGTATTTACTATCTAAATTAATCTGATAAATAGACTTAAATAGATTTTGATATAGAGGGGACATGTGACATAATTCAGTGTACAAATTATTTAAGTTTGGACCTTAGAAAGGTACTTTAACCAAAATGACTTTGAAGGGTGTTTGTCATGGAGTGACCTAAGTGGATGGTAGTTTTTGTTTTTGGAACCTCAATGAAATTTACCTGTCTTCCTCTTAATGCGTTCATTAAACGTGAATGGTAAAGTATTTCATCGAAACATACTTTTTACCACGATAATGCCACAGTAAAATTCCACTACACAGAGATTGTTTGCATGGTGGTATTAACTCTTTCTTTTTGTTTGTGGTTTTTACAACTATATAGAGCTACATGTTATTGAAGGTATCCCCCAGCTAATTTTTGTTCGCTCAAGTTACACTATTGAGGTCTGTTCGCTCTGTCGCTCCTTGAGTCCTTCAAACTTGTTGCGATTCTGGTTATTGAGTTTCTCACACATTTTTCTCATTTTACTTTTCAAAGACAGTAGAAGCTGAGCGAATTTCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCTACTCAACGTGAGTGGTCCTATACCTCTATTTATATCAATATGGGGTTTACCTTGTTAGTACTTATTGCGAGAAAGGAGAATATTATGCTTTGATATGTATATATGTTTATAATGAGAGAAACTTTGTCTTGAATGCAGTGGCTGCTCACCTTGCGGGAATTCACAGTGCCATCAAAATGTTGAATAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTACTTCAATTCTTCACTATTCATCAAAGTGTTTATGATGAAATGGTTTAGAGTATACAAAGGAGGGTGGTTATTGGCTTTCTTTTAATCAGTTCTGATCGGGCTCTGACTGCTGATCATTCATCAAGTTATAGCTGCTACATTTAGTGGTTTCTGATAGGCTTGTGAATTGTTCATGTGAACTTCTGATTAAATTGCTCAATTTGAGACTGATTTTCTCTCTCTGTTATTCTTTGAATTAGGTGATATTCCCTTGGAGAATTCCTTACTAAGACAAGTGTCAAGTTTGATCAGAAGATTGCCGGTAACTGAGTCAGGAAAGTTTCAAGACGATTTCTTGATGGTGAGTGCACTTGCATGCCATTTTCCTTACCCAGTTTCTTCTGCAGTTCAAAAACTTAAATGTTTACACATTTTATGATTAGTTTTTCTTACTTTCATAATGCCTCTCCTTTCAGGAATATAATGACACAATGTTGATTACGTATCTAGCAATGTCCACTAATTGCTCAAGGTATGGTGTTTCTCATCTCATTGTGTACTTTCTCGTTGTATTGTATAAAAATATTTTGGTTAATAAATTAGGTAATACGTTATGCATATTTAGATGTGGAATACTATAAAAATTTATGGCAAAATGTTAAGATTCTTCAACCTGAAACCCAGGAAAATCCCAACAAAGGCCAGAAAACAGATATAGTGCTATGATATGATATATTGAATATAAATTCTCAAGTGTCTCTCAGCTAACAAACAACCAAAATACCAACATAAAGGAAAATAACAACAAAAGAACGATAATGGAAATGGCAATGAACCCAGCTCCTTCGAGAAGGTGAGTCTCTTCTCCCAAAAGCTCTCAGCAGCCTTTCACTAAAATAAAACCTACTTTTGGTAATCCCCAAACATTCTTTTTTATACCCACATACCAGGTGGGTCCCTCAACTGTTTTCTATCTTACCAATAATCTCCCCAGAAGCTGTCTTCTGTGTAATACCAATCTGTGAGACCCCCAATTATACACACGTATGTGAGGAGGGGCAGAAATGAGAATTCACCAGCTAATAATAAGAAAGAATGATGAGGAAGGAGAACGTGCTGAATGGGCCCCACTAGGTGGAATTTTAGGAGAGCTATAATGTTGTAATAGGTTGGATAGGTTTTATTTTTGAAATCTTCTTTAGGAGGGTAGGCTGCTGTAGCCGCAAGAGGGTAGTATCCTTCTTGTAAAGAGAGCTGGTATGTTTTTCTGGGTATTTCTTTCTTTCGTTATCATTTATCTTGTTGATTGTGATATTTTGGCTTGTATATAAATAAAAGATAGCAGAGTACCAACTCTGTTTAGCCACTGTTGGGTCTTTTATTAGTTATTTGTGTTTGGGAGCCTGACATTTGGTATCAGAGCCATAAAACTGGGGGTGGTCACGCGACTCATGGCGTAGCGACAGATTGAGGAAAGGGTAGAGGGAACAGAGAAGGAAATTATGGGTATCAAGGAAATGCTAATGGAGATGAAGAAAACAATGGAAAGAATGGCGGATGAGTTACAGGAGAGTTCTAACTACAAAAAAAAAAAAGATGAGTCGGGAACATCTGATGGTCCGGTCATGAAGCTCAAGGGAAAAATAGAAGAACCTGAGGTTACAATCGATATGAATCAGAACACAATCGATCGAAGTAAGTACAAGAAGTTGGAAATGCCTATGTTCTTGGGCGAAAACCCGGAATCCTAGGTATACAGGGCCGAGCACTTCTTGAAATCAACAATCTACCCGAAAATGAGAAGATCAAAGTGGCTGTGGTCAGTTTTGGGCAAGATGAAGTGGATTGGTACCGATGGACACATAATAGGAAAAGGGTAGAGTCGTGGGAAGATTTAAAAGGAAGGATGTTTGAATTCTTCAAAGATTCTGGACAGAAAAGTTTAGTAGCACGTTTGATCAGAATCCAACAAGATGGTTCTTACAGTGACTGTGAAAAAGTTTGTCACCTACTTAGCACCTTTACCCCACATGGAGGAGAGTGTATTAAGAGACGCCTTTCTGACTGGGTTGGAACCAAATCTTCAAGCGGAAGTGGTCAGCAGATATCCACAGACGTTGGAAGATTGCATGAGAGAGGCTCAAGTGGTTAATGATCGTAACCTGGCGTTGACAATGACAAAGGCAGAAGGGAAAATGATAGAATACAAGAAAGGAGAAGGGTCTGTGGGTCTCAAGAGGGGATGGAGAAGGGGGTAGTAAGGAAGACTGACTTTCCAATGAAGCAAGTGACAATACCCATCAAATGTAATTACCAAAGGAGTGAACCACCCGTTAAACGCCTTTCAGATGCTGAGTTTAGATCCAGACTTGACAAAGGGCTATGTTTCAAATGTAGTGAGAAGTATTCCCTGAGGCATTGATGTAGAATGAAGGAAAAAAGGGAATTGATGTTATTCATCAAGAATGAAGAAGAAGGGAATGAAGAGGAGAACATGAAAAAGGAAAACACAGAGGCAGTGTTGGAATTAAACAACCTGGATCTTAACAAGGAGAAGGAGATCGAATTAAACATCACTACTGGGCTGACCTCAAAGGGTACTATGAAACTAAGGGGTGAAATAAAAGGAAGAGAAGTAGTGGTGCTGATCGATAGTGGAGCCACCCACAACTTTGTGCACTATAAGATCATAGAAGAAATGAAGATACCGATAGAGGCAGACACCACCTTTGCAGTAACAATTGGGGACGAAACTTGTTGTAAAGGGAGAGGATTATGTAAGAGGCTGGAAGTGAAACTACAGGGGTCACAATAGTGGCAGATTTTTTGATAATTGAGTTGGGAAATGTAGATGCAATCCTAGGTATGCAGTGGTTAGACATCACAAACACTATGAAAATACATTGGCTGTCATTGACCATGTCCTTTTGGGTCGGAAGAAAACAGATTGAACTGAAAGGGGACCCTTCCCTCATCCGAGCAGAATGCTCCTTGAAGACAATTGAAAAAACCTGAGAGGAGGAAGATCAAGGGTTTTTATTATCACTACTCAACTATGAGATTGAAGAGAAGGAAGATGGAATGGAGGAATAGACCAAAAAAGGGGATGAAGAGGACACTCCCAGGATCAGAACACTGTTGCAACAGTATACAGATCTATTTGAAGATCCAAAGGGGTTACCACCTAAGAGAGCAATAGACCACCGCATCATGGTAATGCCGAATCAACAACCCATTAATGTACGACCATATAAATACGGGCACGTGCAAAAGAAGAGATTGAGAAGTTGGTGGTGGAGATGCTACAAGCAGAAGTGATCAGGCCCAGGCGTAGCCCTTATTCTAGTCCAGTCTTGTTAGTTAAGAAAAAAGATGGGGGATGGCGTTTTTGCGTGAACTACAGAAAGCTAAATCAGGTCACCGCTTCAGATAAATTCCCCATTCCAGTAATAGAGGAGCTGCTGGATGAATTACATGGAGCCACGGTATTCTCGAAGTTGGATCTGAAATCTGGTTATCACCAAATACGTATGAAGGAGGAAGACATTGAAAAAACTGCGTTTAGAACACAGAGGGACACTATGAATTTGTTGTAATGCCTTTCGGACTCACAAATGCACCAGCCACCTTTCAATCCTTGATGAACCAGG

Coding sequence (CDS)

ATGGCGTCGTCTGGCAGCGGGTTGACATTCAAGTTGCACCCCCTTGTGATTGTAAACATTTCCGATCACTACACCAGGGTTAAGTCTCAGATGAATCCTCCGTCCTTGAGCTGCTCAGCTGCATCTCCTTGCGCCCTAAGTAATGGCGCCGATGCACCCGATTCTACCGACCCTTCAACTTCTCCTCCCGCACCTAGGGTTTTCGGTTGTGTTGTTGGAGTTCAAAGGGGCCGCACGGTTGAGATCTTCAACAGCTTCGAGCTTCTTTATGACCCCAAAACTCACTCACTCGACCGCACCTTCCTTGAGAAGAAGCAAGAACTCTATAAGAAAGTTTTTCCCCACTTCTACATTTTGGGTTGGTATTCTACTGGGAGTGATGCCTTGGAGTCTGACATGCATATCCACAAGGCTTTGATGGATATCAATGAAAGCCCCGTCTATGTTCTTCTCAATCCTTCAATTAATCATGCCCAAAAGGATCTCCCAGTTACGATTTACGAGAGTGAGCTACATGTTATTGAAGGTATCCCCCAGCTAATTTTTGTTCGCTCAAGTTACACTATTGAGACAGTAGAAGCTGAGCGAATTTCTGTTGATCATGTTGCACATTTGAAACCATCTGATGGAGGCTCTGCTGCTACTCAACTGGCTGCTCACCTTGCGGGAATTCACAGTGCCATCAAAATGTTGAATAGCAGGATCAGGATACTTCACAGTTATCTTCTGGCAATGCAAAATGGTGATATTCCCTTGGAGAATTCCTTACTAAGACAAGTGTCAAGTTTGATCAGAAGATTGCCGGTAACTGAGTCAGGAAAGTTTCAAGACGATTTCTTGATGGAATATAATGACACAATGTTGATTACGTATCTAGCAATGTCCACTAATTGCTCAAGGTATGGTGTTTCTCATCTCATTGTGTACTTTCTCGTTGTATTGTATAAAAATATTTTGGTTAATAAATTAGGTAATACGTTATGCATATTTAGATGTGGAATACTATAA

Protein sequence

MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPSTSPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILGWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSRYGVSHLIVYFLVVLYKNILVNKLGNTLCIFRCGIL

Homology

[Close]

BLAST of Cucsat.G20726 vs. ExPASy Swiss-Prot
Match: Q8W206 (COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana OX=3702 GN=CSN6A PE=1 SV=2)

HSP 1 Score: 456.4 bits (1173), Expect = 2.7e-127
Identity = 234/297 (78.79%), Postives = 256/297 (86.20%), Query Frame = 0


Query: 3   SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPSTSP 62
           SS SGLTFKLHPLVIVNISDHYTRVK+Q+NPP      AS CA  +G++  ++       
Sbjct: 4   SSSSGLTFKLHPLVIVNISDHYTRVKTQLNPP------ASICASGHGSNNGEAMFQQN-- 63

Query: 63  PAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILGWY 122
             PRV+GCV+GVQRGRTVEIFNSFELLYDP T +LDR+FLEKKQELYKKVFP FYILGWY
Sbjct: 64  --PRVYGCVIGVQRGRTVEIFNSFELLYDPSTQTLDRSFLEKKQELYKKVFPDFYILGWY 123

Query: 123 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 182
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INH QKDLPVTIYESELHVI+GIPQLIF
Sbjct: 124 STGSDAEESDMHIHKALMDINESPVYVLLNPAINHTQKDLPVTIYESELHVIDGIPQLIF 183

Query: 183 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 242
             +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+  L
Sbjct: 184 AHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQNL 243

Query: 243 LAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 300
            AMQ GD   +NS+LRQVSSL+RRLP  ES +FQD+FLMEYND +LITYLAM TNCS
Sbjct: 244 AAMQKGDKSCDNSVLRQVSSLLRRLPAMESERFQDNFLMEYNDKLLITYLAMITNCS 290

[Close]

BLAST of Cucsat.G20726 vs. ExPASy Swiss-Prot
Match: Q8W1P0 (COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana OX=3702 GN=CSN6B PE=1 SV=2)

HSP 1 Score: 447.2 bits (1149), Expect = 1.6e-124
Identity = 224/297 (75.42%), Postives = 257/297 (86.53%), Query Frame = 0


Query: 3   SSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPSTSP 62
           SS SGLTFKLHPLV++NISDH+TRVK+Q+NPP+ SC+  +    SN ADA    +     
Sbjct: 4   SSSSGLTFKLHPLVMLNISDHFTRVKTQLNPPAASCATGNG---SNNADAMLLQN----- 63

Query: 63  PAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILGWY 122
             PRV+GCV+G+QRGRTVEIFNSFEL++DP   +LDR+FLEKKQELYKKVFP FY+LGWY
Sbjct: 64  --PRVYGCVIGLQRGRTVEIFNSFELIFDPALDTLDRSFLEKKQELYKKVFPDFYVLGWY 123

Query: 123 STGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLIF 182
           STGSDA ESDMHIHKALMDINESPVYVLLNP+INHAQKDLPVTIYESE HVI+GIPQ IF
Sbjct: 124 STGSDATESDMHIHKALMDINESPVYVLLNPAINHAQKDLPVTIYESEFHVIDGIPQSIF 183

Query: 183 VRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSYL 242
           V +SYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSRIR+L+ ++
Sbjct: 184 VHTSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHI 243

Query: 243 LAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 300
           +AMQ GD P ENS+LRQVSSL+R LP  ES KF ++FLMEYND +L++YLAM TNC+
Sbjct: 244 VAMQKGDKPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLLMSYLAMITNCT 290

[Close]

BLAST of Cucsat.G20726 vs. ExPASy Swiss-Prot
Match: Q6ZKM2 (COP9 signalosome complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CSN6 PE=1 SV=1)

HSP 1 Score: 441.8 bits (1135), Expect = 6.9e-123
Identity = 223/298 (74.83%), Postives = 252/298 (84.56%), Query Frame = 0


Query: 2   ASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPSTS 61
           ASS SGLTFKLHPLVIVN+SDH+TRVK+Q      +CS     + + G            
Sbjct: 21  ASSSSGLTFKLHPLVIVNVSDHHTRVKAQ-----AACSGDGASSAAAGGQ---------- 80

Query: 62  PPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILGW 121
              PRVFGCV+GVQRGRTVEIFNSFEL+ DP + +LDR FLEKKQELYKKVFP FY+LGW
Sbjct: 81  --PPRVFGCVIGVQRGRTVEIFNSFELVLDPVSGTLDRAFLEKKQELYKKVFPDFYVLGW 140

Query: 122 YSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQLI 181
           YSTGSD  ++DM IHKALMDINESPVY+LLNP+IN +QKDLPVTIYESELHVI+G PQLI
Sbjct: 141 YSTGSDVRDTDMQIHKALMDINESPVYLLLNPAINLSQKDLPVTIYESELHVIDGSPQLI 200

Query: 182 FVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHSY 241
           FVR++YTIETVEAERISVDHVAHLKPSDGGSAATQLAAHL GIHSAIKMLNSR+R++H Y
Sbjct: 201 FVRANYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRVRVIHQY 260

Query: 242 LLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 300
           L++MQ GD+PL+NSLLRQVSSL+RRLP  ES KFQDDFLMEYNDT+L+TYLAM TNCS
Sbjct: 261 LVSMQKGDMPLDNSLLRQVSSLVRRLPAMESEKFQDDFLMEYNDTLLMTYLAMFTNCS 301

[Close]

BLAST of Cucsat.G20726 vs. ExPASy Swiss-Prot
Match: Q54C92 (COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=csn6 PE=1 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 4.5e-58
Identity = 128/300 (42.67%), Postives = 182/300 (60.67%), Query Frame = 0


Query: 2   ASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPSTS 61
           +++ SGL   LHPLV++NISDH+TR K Q N    +C                       
Sbjct: 20  SANSSGLEVDLHPLVLINISDHFTRTKVQSNYQD-NC----------------------- 79

Query: 62  PPAPRVFGCVVGVQRGRTVEIFNSFELLYD--PKTHSLDRTFLEKKQELYKKVFPHFYIL 121
               RV G ++GVQ GR VEI NSFE++Y    K   LD  +L KK   Y+++FP + +L
Sbjct: 80  ----RVIGVILGVQNGRNVEICNSFEMVYATVDKQLVLDIEYLRKK---YEQLFPLYDLL 139

Query: 122 GWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQ 181
           GWYSTGS   + D+ +HK + + NESP+Y++L+   +   KDLPV IYESELH++   P 
Sbjct: 140 GWYSTGSQVSKDDILLHKQISEHNESPLYLMLDTD-SPKSKDLPVIIYESELHIVNDEPT 199

Query: 182 LIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILH 241
            IFV++ Y I+T EAERI V+H+A + PS  GS  + L +HL  +H+AI MLN R++ L 
Sbjct: 200 TIFVKTPYKIQTGEAERIGVNHIAKVTPS--GSEGSGLTSHLFTMHNAISMLNIRVKALS 259

Query: 242 SYLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 300
            YL A++   +P E ++LR+ SSL  +LP  ++  F+  +L EYND +L+TYLA  T  S
Sbjct: 260 DYLQAVKEKRLPYEQNILRKASSLCNQLPTIDTHDFKKSYLQEYNDVLLVTYLASITKTS 285

[Close]

BLAST of Cucsat.G20726 vs. ExPASy Swiss-Prot
Match: Q6NUC2 (COP9 signalosome complex subunit 6 OS=Xenopus laevis OX=8355 GN=cops6 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.8e-51
Identity = 114/299 (38.13%), Postives = 172/299 (57.53%), Query Frame = 0


Query: 1   MASSGSG-LTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPS 60
           MA   +G +T  LHPLVI+NISDH+ R++SQ   P                         
Sbjct: 22  MAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPM------------------------ 81

Query: 61  TSPPAPRVFGCVVGVQRGRTVEIFNSFELL--YDPKTHSLDRTFLEKKQELYKKVFPHFY 120
                 +V G ++G Q GR +E+ NSFELL   + +  ++++ +   K+E +K+VF    
Sbjct: 82  ------QVIGALIGKQEGRNIEVMNSFELLSQINDEKITINKEYYYTKEEQFKQVFKDME 141

Query: 121 ILGWYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGI 180
            LGWY+TG     SD+H+HK + +I ESP+++ LNP   H   DLPV++YES + ++ G 
Sbjct: 142 FLGWYTTGGTPDPSDIHVHKQVCEIIESPLFLKLNPMTKHT--DLPVSVYESVIDIVNGE 201

Query: 181 PQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRI 240
             ++    SYT+ T EAERI VDHVA +  +  G  +T +A HL   HSAIKML+SR+R+
Sbjct: 202 ATMLLAELSYTLATEEAERIGVDHVARMTATGSGENST-VAEHLIAQHSAIKMLHSRVRL 261

Query: 241 LHSYLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMST 297
           +  Y+ A + G++P  + +LR+ S+L   LPV  + KF+ DF  + ND  L++YL   T
Sbjct: 262 ILEYVRAAEGGEVPFNHEILREASALCHCLPVLSTDKFKTDFYDQCNDVGLMSYLGTIT 287

[Close]

BLAST of Cucsat.G20726 vs. NCBI nr
Match: XP_004139760.1 (COP9 signalosome complex subunit 6a [Cucumis sativus] >KAE8646028.1 hypothetical protein Csa_016543 [Cucumis sativus])

HSP 1 Score: 587 bits (1512), Expect = 5.02e-210
Identity = 299/299 (100.00%), Postives = 299/299 (100.00%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. NCBI nr
Match: XP_008447803.1 (PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo] >XP_008447804.1 PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo])

HSP 1 Score: 580 bits (1495), Expect = 1.96e-207
Identity = 295/299 (98.66%), Postives = 296/299 (99.00%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSL+CSA SPCALSNGADAPDS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADAPDSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPP PRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPTPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. NCBI nr
Match: XP_038897789.1 (COP9 signalosome complex subunit 6a-like [Benincasa hispida])

HSP 1 Score: 573 bits (1476), Expect = 1.53e-204
Identity = 291/299 (97.32%), Postives = 294/299 (98.33%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSL+CSA SPCALSNG+D  DS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGSDVADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDR FLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRPFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. NCBI nr
Match: XP_022139602.1 (COP9 signalosome complex subunit 6a-like [Momordica charantia])

HSP 1 Score: 563 bits (1450), Expect = 1.40e-200
Identity = 286/299 (95.65%), Postives = 293/299 (97.99%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQ NPPSL+ SA SPCALSNGAD+ DS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQTNPPSLTSSAPSPCALSNGADSADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SP APRV+GCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPSAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDA+ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDT+LI+YLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTLLISYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. NCBI nr
Match: XP_022936414.1 (COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_022936415.1 COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_023536062.1 COP9 signalosome complex subunit 6a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 557 bits (1435), Expect = 2.70e-198
Identity = 283/299 (94.65%), Postives = 290/299 (96.99%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSA SPCALSN AD  DS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPPAPRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGD+P+E+SLLRQVSSL+RRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. ExPASy TrEMBL
Match: A0A0A0K584 (COP9 signalosome complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_7G184650 PE=3 SV=1)

HSP 1 Score: 589 bits (1518), Expect = 1.13e-211
Identity = 300/300 (100.00%), Postives = 300/300 (100.00%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300
           YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCSR 300

[Close]

BLAST of Cucsat.G20726 vs. ExPASy TrEMBL
Match: A0A1S3BI92 (COP9 signalosome complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103490191 PE=3 SV=1)

HSP 1 Score: 580 bits (1495), Expect = 9.47e-208
Identity = 295/299 (98.66%), Postives = 296/299 (99.00%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSL+CSA SPCALSNGADAPDS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLTCSAPSPCALSNGADAPDSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPP PRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPTPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. ExPASy TrEMBL
Match: A0A6J1CEF0 (COP9 signalosome complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC111010462 PE=3 SV=1)

HSP 1 Score: 563 bits (1450), Expect = 6.79e-201
Identity = 286/299 (95.65%), Postives = 293/299 (97.99%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQ NPPSL+ SA SPCALSNGAD+ DS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQTNPPSLTSSAPSPCALSNGADSADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SP APRV+GCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPSAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDA+ESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSL+RRLPVTESGKFQDDFLMEYNDT+LI+YLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVTESGKFQDDFLMEYNDTLLISYLAMSTNCS 299

[Close]

BLAST of Cucsat.G20726 vs. ExPASy TrEMBL
Match: A0A6J1FDK7 (COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443041 PE=3 SV=1)

HSP 1 Score: 557 bits (1435), Expect = 1.31e-198
Identity = 283/299 (94.65%), Postives = 290/299 (96.99%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPS  CSA SPCALSN AD  DS DP+T
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSSCCSAPSPCALSNDADVADSVDPTT 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPPAPRV+GCVVGVQRGRTVEIFNSFELLYDPKT SLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQRGRTVEIFNSFELLYDPKTQSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL
Sbjct: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGD+P+E+SLLRQVSSL+RRLPVTES KFQDDFLM+YNDTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDVPMESSLLRQVSSLLRRLPVTESIKFQDDFLMDYNDTMLITYLAMSTNCS 299

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BLAST of Cucsat.G20726 vs. ExPASy TrEMBL
Match: A0A6J1FKS7 (COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111446157 PE=3 SV=1)

HSP 1 Score: 555 bits (1429), Expect = 1.07e-197
Identity = 282/299 (94.31%), Postives = 290/299 (96.99%), Query Frame = 0


Query: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSCSAASPCALSNGADAPDSTDPST 60
           MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLS S+ SPCALSNGAD  DS DPST
Sbjct: 1   MASSGSGLTFKLHPLVIVNISDHYTRVKSQMNPPSLSSSSPSPCALSNGADVADSADPST 60

Query: 61  SPPAPRVFGCVVGVQRGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120
           SPPAPRV+GCVVGVQ+GRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG
Sbjct: 61  SPPAPRVYGCVVGVQKGRTVEIFNSFELLYDPKTHSLDRTFLEKKQELYKKVFPHFYILG 120

Query: 121 WYSTGSDALESDMHIHKALMDINESPVYVLLNPSINHAQKDLPVTIYESELHVIEGIPQL 180
           WYSTGSDA+ESDMHIHKALMDINESPVYVLL+PSINHAQKDLPVTIYESELH+IEGIPQL
Sbjct: 121 WYSTGSDAMESDMHIHKALMDINESPVYVLLDPSINHAQKDLPVTIYESELHLIEGIPQL 180

Query: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240
           IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS
Sbjct: 181 IFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLAGIHSAIKMLNSRIRILHS 240

Query: 241 YLLAMQNGDIPLENSLLRQVSSLIRRLPVTESGKFQDDFLMEYNDTMLITYLAMSTNCS 299
           YLLAMQNGDIPLENSLLRQVSSL+RRLPV ES KF+DDFL EY DTMLITYLAMSTNCS
Sbjct: 241 YLLAMQNGDIPLENSLLRQVSSLLRRLPVIESEKFRDDFLTEYTDTMLITYLAMSTNCS 299

The following BLAST results are available for this feature:

BLAST of Cucsat.G20726 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W206	2.7e-127	78.79	COP9 signalosome complex subunit 6a OS=Arabidopsis thaliana OX=3702 GN=CSN6A PE=...	[more]
Q8W1P0	1.6e-124	75.42	COP9 signalosome complex subunit 6b OS=Arabidopsis thaliana OX=3702 GN=CSN6B PE=...	[more]
Q6ZKM2	6.9e-123	74.83	COP9 signalosome complex subunit 6 OS=Oryza sativa subsp. japonica OX=39947 GN=C...	[more]
Q54C92	4.5e-58	42.67	COP9 signalosome complex subunit 6 OS=Dictyostelium discoideum OX=44689 GN=csn6 ...	[more]
Q6NUC2	1.8e-51	38.13	COP9 signalosome complex subunit 6 OS=Xenopus laevis OX=8355 GN=cops6 PE=2 SV=1	[more]

BLAST of Cucsat.G20726 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139760.1	5.02e-210	100.00	COP9 signalosome complex subunit 6a [Cucumis sativus] >KAE8646028.1 hypothetical...	[more]
XP_008447803.1	1.96e-207	98.66	PREDICTED: COP9 signalosome complex subunit 6a [Cucumis melo] >XP_008447804.1 PR...	[more]
XP_038897789.1	1.53e-204	97.32	COP9 signalosome complex subunit 6a-like [Benincasa hispida]	[more]
XP_022139602.1	1.40e-200	95.65	COP9 signalosome complex subunit 6a-like [Momordica charantia]	[more]
XP_022936414.1	2.70e-198	94.65	COP9 signalosome complex subunit 6a-like [Cucurbita moschata] >XP_022936415.1 CO...	[more]

BLAST of Cucsat.G20726 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K584	1.13e-211	100.00	COP9 signalosome complex subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_7G184650 PE...	[more]
A0A1S3BI92	9.47e-208	98.66	COP9 signalosome complex subunit 6 OS=Cucumis melo OX=3656 GN=LOC103490191 PE=3 ...	[more]
A0A6J1CEF0	6.79e-201	95.65	COP9 signalosome complex subunit 6 OS=Momordica charantia OX=3673 GN=LOC11101046...	[more]
A0A6J1FDK7	1.31e-198	94.65	COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111443041...	[more]
A0A6J1FKS7	1.07e-197	94.31	COP9 signalosome complex subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111446157...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	SMART	SM00232	pad1_6	coord: 9..172 e-value: 0.0015 score: 26.5
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain	PFAM	PF01398	JAB	coord: 6..145 e-value: 1.2E-24 score: 86.6
None	No IPR available	GENE3D	3.40.140.10	Cytidine Deaminase, domain 2	coord: 1..207 e-value: 7.4E-61 score: 206.6
None	No IPR available	PANTHER	PTHR10540:SF24	COP9 SIGNALOSOME COMPLEX SUBUNIT 6A	coord: 2..302
None	No IPR available	PANTHER	PTHR10540	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED	coord: 2..302
IPR024969	Rpn11/EIF3F, C-terminal	PFAM	PF13012	MitMem_reg	coord: 193..299 e-value: 6.1E-23 score: 81.4
IPR037518	MPN domain	PROSITE	PS50249	MPN	coord: 45..173 score: 17.353092
IPR033859	COP9 signalosome subunit 6	CDD	cd08063	MPN_CSN6	coord: 8..302 e-value: 9.07159E-128 score: 364.267

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G20726.T1	Cucsat.G20726.T1	mRNA
Cucsat.G20726.T2	Cucsat.G20726.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000338	protein deneddylation
biological_process	GO:1990641	response to iron ion starvation
cellular_component	GO:0008180	COP9 signalosome
cellular_component	GO:0005737	cytoplasm
molecular_function	GO:0070122	isopeptidase activity
molecular_function	GO:0008237	metallopeptidase activity
molecular_function	GO:0005515	protein binding