Cucsat.G20695 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G20695
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Retrotransposon protein
Location	ctg62: 310692 .. 311840 (+)
RNA-Seq Expression	Cucsat.G20695
Synteny	Cucsat.G20695

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATCATCGATGTGGAGGAGATGGTCGCAATGTTCCTGCATGTATTGGTGCACGATATGAAGAATAGAGTCATCCAGCGAGACTTTGTGCGGTTGGGGGAGACTGTTTCCCATCATTTCAACATTGTGTTGTTAGTTGTGATATGACTTCACGGTGAGTTGCTGAAGAAACCACTGTCGGTAACAAACACATGCACCGATTCACGATGGAGGTGCTTCGAGATTCGACTATTCTTGCAATCCGTACTTTAAAGGTATCCCAAGGTCATAGTACTTATCTGCAGTTTGTTCAATTCTGCATAATTTTCTTGGGGCATTGGACAAAACTTACATAAGATGAATGTGTATGTGTTAAATCATCCTAGGTATAGAACACGTAAGAGAAAAATTTTCACAAACGTCCTTGACTTCTGTGACATGAAATGTGACTTCGTATTCGTCTTGGCTGGTTGGGAAGGATCCGCAGCTGATTCCCGTATACTTCGCAATGCTATTTCACGACCCAATGGACTGCAGGTTCTGAAGGGTAAGTGGTATTTGTACTTCTCCGGCATCAAAACTAAGTGATTTGTATATGGAGTTATCTTAAATCGGTTGCTGTTGTGATATGATTTTACTATCTATGCGACATCGGGTACGCCAACGTGGAATGATTTCTTACTCCATATAGAGGACAAAGATACCACTTGCGAGAGTGGCGTGAAGCTGGAAATGCACCAATGAATGCGAAAGAGTACTTCAACATCAAATATTCCTCGACATGGAATGTTATTGAATGAGCATTCAGTCTGTTAAAGGGTCATTTGGCAATACTAAGCGACAAGTCCTACTATTCTGTGCAGGTTCAGTGACATACGATTTTGGCATGTTGACTGTAACAGAATCTCATAAACCGGGAGATGACAAATGTCGATGTTTTGGACGATGTGGACAAGGGAGACTCAGTGTATGCGATGATAGGAGTTGATGAAATTCATTACATTGAGAACTCGGACTCAGTGGAGGGTGTACCTAGCTGCGGAGATGTTCAATTAATGGCAATTGTGTAATCAATATATCTCATTTTGTCGCTTTAGATTAGTAAAATTTATAGTATTGTAGTACCGTATTTGTTATCTTATATATTGCATGTACGCGTGCATCAACGT

Coding sequence (CDS)

ATGAATGTGTATGTGTTAAATCATCCTAGGTATAGAACACGTAAGAGAAAAATTTTCACAAACGTCCTTGACTTCTGTGACATGAAATGTGACTTCGTATTCGTCTTGGCTGGTTGGGAAGGATCCGCAGCTGATTCCCGTATACTTCGCAATGCTATTTCACGACCCAATGGACTGCAGGTTCTGAAGGGTTCAGTGACATACGATTTTGGCATGTTGACTGTAACAGAATCTCATAAACCGGGAGATGACAAATGTCGATGTTTTGGACGATGTGGACAAGGGAGACTCAGTGTATGCGATGATAGGAGTTGA

Protein sequence

MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKGSVTYDFGMLTVTESHKPGDDKCRCFGRCGQGRLSVCDDRS

Homology

[Close]

BLAST of Cucsat.G20695 vs. NCBI nr
Match: KAA0063430.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 95.5 bits (236), Expect = 1.74e-20
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   +HPRYRTRK K+  NVL  C+ K DFVFVL+GWEGS ADSRILR+ ISR NGL+
Sbjct: 109 VNVSATDHPRYRTRKSKVAINVLGVCNTKGDFVFVLSGWEGSTADSRILRDVISRHNGLK 168

Query: 61  VLKGSVTYDFGMLTVTESHKPGDDKCRCFGRC 92
           V KG  T   G     +S+ P D +CR    C
Sbjct: 169 VSKGRWTILRG-----KSYYPVDVQCRTIMAC 195

[Close]

BLAST of Cucsat.G20695 vs. NCBI nr
Match: KAA0037852.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK09828.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 1.93e-20
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   +  RYRTR R++ TNVL  CD K DFV+VLAGWEGSA DSRILR+AISRPNGL+
Sbjct: 64  VNVPASDRARYRTRNREVATNVLGVCDTKGDFVYVLAGWEGSATDSRILRDAISRPNGLK 123

Query: 61  VLKG 64
           V KG
Sbjct: 124 VPKG 127

[Close]

BLAST of Cucsat.G20695 vs. NCBI nr
Match: XP_008446951.1 (PREDICTED: uncharacterized protein LOC103489505 [Cucumis melo])

HSP 1 Score: 89.4 bits (220), Expect = 4.81e-20
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 7   NHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG 64
           +  RYRT KR++ TNVL  CD K DFV+VL GWEGSAADSRILR+AISRPNGL+VLKG
Sbjct: 72  SRARYRTCKREVATNVLGVCDTKEDFVYVLTGWEGSAADSRILRDAISRPNGLKVLKG 129

[Close]

BLAST of Cucsat.G20695 vs. NCBI nr
Match: TYK22656.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 6.97e-20
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   + P +RTRK KI TNVL  CD K DFV+VLAGWEGSAADSRILR+A+SR NGLQ
Sbjct: 109 VNVPATDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQ 168

Query: 61  VLKG 64
           V KG
Sbjct: 169 VPKG 172

[Close]

BLAST of Cucsat.G20695 vs. NCBI nr
Match: KAA0054344.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK12381.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 7.08e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   +  RYRTRK ++ TNVL  CD K DF++VLAGWEGSAADSRILR+A+SRPNGL+
Sbjct: 58  VNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLK 117

Query: 61  VLKG 64
           V KG
Sbjct: 118 VPKG 121

[Close]

BLAST of Cucsat.G20695 vs. ExPASy TrEMBL
Match: A0A5A7V8C5 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00690 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 8.43e-21
Identity = 51/92 (55.43%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   +HPRYRTRK K+  NVL  C+ K DFVFVL+GWEGS ADSRILR+ ISR NGL+
Sbjct: 109 VNVSATDHPRYRTRKSKVAINVLGVCNTKGDFVFVLSGWEGSTADSRILRDVISRHNGLK 168

Query: 61  VLKGSVTYDFGMLTVTESHKPGDDKCRCFGRC 92
           V KG  T   G     +S+ P D +CR    C
Sbjct: 169 VSKGRWTILRG-----KSYYPVDVQCRTIMAC 195

[Close]

BLAST of Cucsat.G20695 vs. ExPASy TrEMBL
Match: A0A5A7T305 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold127G001400 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.33e-21
Identity = 44/64 (68.75%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   +  RYRTR R++ TNVL  CD K DFV+VLAGWEGSA DSRILR+AISRPNGL+
Sbjct: 64  VNVPASDRARYRTRNREVATNVLGVCDTKGDFVYVLAGWEGSATDSRILRDAISRPNGLK 123

Query: 61  VLKG 64
           V KG
Sbjct: 124 VPKG 127

[Close]

BLAST of Cucsat.G20695 vs. ExPASy TrEMBL
Match: A0A1S3BGY1 (uncharacterized protein LOC103489505 OS=Cucumis melo OX=3656 GN=LOC103489505 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 2.33e-20
Identity = 43/58 (74.14%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 7   NHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQVLKG 64
           +  RYRT KR++ TNVL  CD K DFV+VL GWEGSAADSRILR+AISRPNGL+VLKG
Sbjct: 72  SRARYRTCKREVATNVLGVCDTKEDFVYVLTGWEGSAADSRILRDAISRPNGLKVLKG 129

[Close]

BLAST of Cucsat.G20695 vs. ExPASy TrEMBL
Match: A0A5D3DGC8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold195G00980 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.37e-20
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   + P +RTRK KI TNVL  CD K DFV+VLAGWEGSAADSRILR+A+SR NGLQ
Sbjct: 109 VNVPATDRPTFRTRKGKIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRENGLQ 168

Query: 61  VLKG 64
           V KG
Sbjct: 169 VPKG 172

[Close]

BLAST of Cucsat.G20695 vs. ExPASy TrEMBL
Match: A0A5A7UGR5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001630 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.43e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 1   MNVYVLNHPRYRTRKRKIFTNVLDFCDMKCDFVFVLAGWEGSAADSRILRNAISRPNGLQ 60
           +NV   +  RYRTRK ++ TNVL  CD K DF++VLAGWEGSAADSRILR+A+SRPNGL+
Sbjct: 58  VNVPASDRARYRTRKGEVATNVLGVCDTKGDFIYVLAGWEGSAADSRILRDALSRPNGLK 117

Query: 61  VLKG 64
           V KG
Sbjct: 118 VPKG 121

The following BLAST results are available for this feature:

BLAST of Cucsat.G20695 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G20695 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063430.1	1.74e-20	55.43	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK11691.1 putative nucleas...	[more]
KAA0037852.1	1.93e-20	68.75	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK09828.1 putative nucleas...	[more]
XP_008446951.1	4.81e-20	74.14	PREDICTED: uncharacterized protein LOC103489505 [Cucumis melo]	[more]
TYK22656.1	6.97e-20	70.31	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0054344.1	7.08e-20	67.19	retrotransposon protein [Cucumis melo var. makuwa] >TYK12381.1 retrotransposon p...	[more]

BLAST of Cucsat.G20695 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8C5	8.43e-21	55.43	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7T305	9.33e-21	68.75	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3BGY1	2.33e-20	74.14	uncharacterized protein LOC103489505 OS=Cucumis melo OX=3656 GN=LOC103489505 PE=...	[more]
A0A5D3DGC8	3.37e-20	70.31	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UGR5	3.43e-20	67.19	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR22930	UNCHARACTERIZED	coord: 5..70
None	No IPR available	PANTHER	PTHR22930:SF201	NUCLEASE HARBI1-LIKE PROTEIN	coord: 5..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G20695.T1	Cucsat.G20695.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding