Cucsat.G20633 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G20633
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Pentatricopeptide repeat-containing protein
Location	ctg62: 136761 .. 138968 (-)
RNA-Seq Expression	Cucsat.G20633
Synteny	Cucsat.G20633

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACTAGTCCATATGTATTTAATTGTAGGCCTAATGTTATTTCCTACAGTATCATCATAGATGGACTTTGTAAGGTTGGAAATTGGGAGGAGGCTATATGTTTATTCAATGAGATGGTGGATCAAGGTGTTCAACCAAATGTTGTCACATTTAGTGTGTTGATTGATATGCTTTGCAAGGAAGGACAGGTTATCAAGGCTAAGAAGTTGCTAGAGATGATGATTCAGATAGGTATTGTTCCTAATTTGTTTACTTATACTTCATTGATTAAGGGGTTTTGTTTGGTTGGTGACTTGAATAGTGCCAAGGAGTTGTTTGTTAGTATGCCAAGTAAGGGATATGAACCTGATGTGATTAGTTACAATATGTTAATCAATGGGTATTGTAAAACCTTGAAGGTGGAAGAAGCAATGAAGCTTTTCAATGAAATGCTTCATGTGGGAATGTGGCCAGATGTGAAAACTTCGGGTGTCTTGTTAAAAGCGCTTTTTCTTGCCGGCAAGGTTGATGATGCCAAGGAACTATTTCGTGTCATTAAACCTTATGCTATGCCCAAAGATTTATGTATATGTTGTATTTTCTTAGATGGGTTGTGTAAGAATGGTTATATTTTTGAAGCGATGAAACTTTTTAATGAGCTAGAATCTTACAACATGAAATTGGACATTGAAACCTTTGGTTGTCTAATTGATGGTCTGTGCAAAGCAGGGAAACTTGAAACTGCTTGGGAGCTATTTGAAAAACTATATGAGGAAGGAATTCAACCGGATGCTATGGCTTATTCCAGTATGATCCATGGGTTTTGTAAGAAGGGACAAGTAGATAAGGCAAATATTTTGTTTCAAAAGATGGAAGAAAATGGTTGTTCTCCCGACTTAATTACTTATAGTATCCTTATGCGTGGTTTCTATGAGAGTAATAAATTAGAGAAAGTGGTTCAACTCCTCCATAGGATGATTGAAAAGGATGTGTGGCCAGATGATGGCATTTATGCTATAGTTGAAGACATGGTTTGCAAAGATGAAAAATATAAAGAATGGCTAGACTTGCTTCAAAGATTTTTTGTCCAAAAGCATCGGAATGGCTATTTATAGACTTAGAAGCTATATGACTTGGAAATATCTAATCAGTTTTGAGAAGCAATGAAACACATTGGTTTCCATTTTTCTTCTTTGTTGCTAAAAAAAATATTTGAGTTATTCTTCACGAGCAGCATTGGTAGCGAGTTTGTTAAGAAATGGAGAGAGAGAGAGAGGCTGACAATGGAGTAATTATACTTGGGAGAATTGAAATCACAACCACCAGCAGGGAGGAGCACATTGATTGACGACATCGCTTGTGGGTGTGAGACTGGAGAAAATAGGGTGTTGTGGTGTGAGAAGTTGTTGGTTAGTATGCCAAGTAAGGGATATGAACCTGATGTGATTAGTTACAATATGTTAATCAATGGGTATTGTAAAACCTTGAAGGTGGAAGAAGCAATGAAGCTTTCCAATGAAATGTTTCATGTGGGAATGTGACCAGATATGAAAGCGCTTTTTCTTGCCGAAATCACAAATCTTTTCCTAGAAAAGCTCAACAACCACTAGCGGGGAGGAGCACATCGATCAACGACATTGCTTGTTGGTGGGAGACCGATGAAAATAGGGCGTTGTGGTGTGAGAAAATGTGGAAATGAAAAAGTTCTTAACAACAGACAAAAAGGGGATTTGAGCCTTGATGCCTCGTCAAATGCATATCTTCTATTCGAAAACCGACATTAAAGAATCACCTCTTTGTTAGACACTTTTTGACATAGTACATAAGTATTAGTTTCGCGATCAACTTCAAATGCCTAATTTGTTGTAATGTTTGAAATTAGGTTGTTTCTTTCTCAAAGATATCACTTCTGTTTTCCATTTATCTTTCTTCTTTTTGTTTAAGAATTTCTTAAAGGTTGTCTTCTAGGCACAGTTGAGCGCACGAATGTTGAGACTTCGCAACAAAAGTTTTAAAAGATGATAAATTGTGAGTTGTGAATTAAAATTATTCAA

Coding sequence (CDS)

ACTAGTCCATATGTATTTAATTGTAGGCCTAATGTTATTTCCTACAGTATCATCATAGATGGACTTTGTAAGGTTGGAAATTGGGAGGAGGCTATATGTTTATTCAATGAGATGGTGGATCAAGGTGTTCAACCAAATGTTGTCACATTTAGTGTGTTGATTGATATGCTTTGCAAGGAAGGACAGGTTATCAAGGCTAAGAAGTTGCTAGAGATGATGATTCAGATAGGGAAACTTGAAACTGCTTGGGAGCTATTTGAAAAACTATATGAGGAAGGAATTCAACCGGATGCTATGGCTTATTCCAGTATGATCCATGGGTTTTGTAAGAAGGGACAAGTAGATAAGGCAAATATTTTGTTTCAAAAGATGGAAGAAAATGGTTGTTCTCCCGACTTAATTACTTATAGTATCCTTATGCGTGGTTTCTATGAGAGTAATAAATTAGAGAAAGTGGTTCAACTCCTCCATAGGATGATTGAAAAGGATGTGTGGCCAGATGATGGCATTTATGCTATAGTTGAAGACATGGTTTGCAAAGATGAAAAATATAAAGAATGGCTAGACTTGCTTCAAAGATTTTTTGTCCAAAAGCATCGGAATGGCTATTTATAG

Protein sequence

TSPYVFNCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL

Homology

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BLAST of Cucsat.G20633 vs. ExPASy Swiss-Prot
Match: Q6NQ83 (Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22470 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 4.3e-36
Identity = 77/214 (35.98%), Postives = 125/214 (58.41%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           M+LF E+   G+ P+  T   L+     +GK++ AKELF+ +    +P  +    I LDG
Sbjct: 405 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LC NG + +A+++F +++   M L I  +  +I G+C A K++ AW LF  L ++G++PD
Sbjct: 465 LCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPD 524

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            + Y+ MI G CKKG + +A++LF+KM+E+GC+PD  TY+IL+R     + L   V+L+ 
Sbjct: 525 VVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIE 584

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 215
            M       D     +V DM+      K +LD+L
Sbjct: 585 EMKVCGFSADSSTIKMVIDMLSDRRLDKSFLDML 618

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BLAST of Cucsat.G20633 vs. ExPASy Swiss-Prot
Match: P0C7Q7 (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 76/214 (35.51%), Postives = 122/214 (57.01%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MK+F  +   G+  +  T  +L++    +GK+  A+ELF+ +  + +  D+    I LDG
Sbjct: 388 MKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDG 447

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LC NG + +A+++F +L+   M L I  +  +I+G+CK GK+E AW LF  L  +G++P+
Sbjct: 448 LCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPN 507

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            M Y+ MI G CKKG + +ANIL +KMEE+G +P+  TY+ L+R       L    +L+ 
Sbjct: 508 VMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 215
            M       D     +V DM+   E  K +LD+L
Sbjct: 568 EMKSCGFSADASSIKMVIDMLLSGELDKSFLDML 601

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BLAST of Cucsat.G20633 vs. ExPASy Swiss-Prot
Match: Q9SXD1 (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 6.9e-34
Identity = 75/214 (35.05%), Postives = 124/214 (57.94%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           M++F EM   G+  +  T  +L++ LF AG  D A+E+F+ +    +P ++      LDG
Sbjct: 416 MEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDG 475

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG + +AM +F  L+   M+  I T+  +I+G+CKAGK+E  W+LF  L  +G++PD
Sbjct: 476 LCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPD 535

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            +AY++MI GFC+KG  ++A+ LF++M+E+G  P+   Y+ L+R        E   +L+ 
Sbjct: 536 VVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIK 595

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 215
            M       D     +V +M+      K +LD+L
Sbjct: 596 EMRSCGFAGDASTIGLVTNMLHDGRLDKSFLDML 629

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BLAST of Cucsat.G20633 vs. ExPASy Swiss-Prot
Match: Q0WKV3 (Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12300 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.8e-33
Identity = 76/214 (35.51%), Postives = 121/214 (56.54%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           ++LF +M   G+  D  T   L++     GK++ AKELF+ +    +P ++    I LDG
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LC NG   +A+++F ++E   M+LDI  +  +I G+C A K++ AW+LF  L  +G++P 
Sbjct: 483 LCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPG 542

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
              Y+ MI G CKKG + +A +LF+KMEE+G +PD  TY+IL+R         K V+L+ 
Sbjct: 543 VKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIE 602

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 215
            +       D     +V DM+      K +LD+L
Sbjct: 603 ELKRCGFSVDASTIKMVIDMLSDGRLKKSFLDML 636

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BLAST of Cucsat.G20633 vs. ExPASy Swiss-Prot
Match: Q9ASZ8 (Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX=3702 GN=At1g12620 PE=2 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.8e-33
Identity = 76/214 (35.51%), Postives = 121/214 (56.54%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           ++LF +M   G+  D  T   L++     GK++ AKELF+ +    +  D+    I LDG
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LC NG   +A+++F ++E   M+LDI  +  +I G+C A K++ AW+LF  L  +G++PD
Sbjct: 467 LCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPD 526

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
              Y+ MI G CKKG + +A++LF+KMEE+G SP+  TY+IL+R         K  +L+ 
Sbjct: 527 VKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIE 586

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLL 215
            +       D     +V DM+      K +LD+L
Sbjct: 587 EIKRCGFSVDASTVKMVVDMLSDGRLKKSFLDML 620

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BLAST of Cucsat.G20633 vs. NCBI nr
Match: XP_031745146.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 476 bits (1226), Expect = 1.78e-165
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG
Sbjct: 290 MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 349

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD
Sbjct: 350 LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 409

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
           AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH
Sbjct: 410 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 469

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 227
           RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL
Sbjct: 470 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 516

[Close]

BLAST of Cucsat.G20633 vs. NCBI nr
Match: XP_008447194.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like [Cucumis melo])

HSP 1 Score: 440 bits (1132), Expect = 3.29e-150
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL++EMLHVGMWPD+KTSGVLLKALFLAGKV+DAKELFRVIKPYA+P+DLCICCIFLDG
Sbjct: 362 MKLYSEMLHVGMWPDMKTSGVLLKALFLAGKVNDAKELFRVIKPYAIPEDLCICCIFLDG 421

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG  FEAMKLFNEL+SYNMKLDIETFGCLIDGLCKAGKLETAWELF+KL +EGIQPD
Sbjct: 422 LCKNGCFFEAMKLFNELKSYNMKLDIETFGCLIDGLCKAGKLETAWELFDKLSKEGIQPD 481

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
           AMAY+SMIHGFCK+GQVDKANILFQKMEENGCSPDLITYSILMRGF+ESNKLEKVVQLLH
Sbjct: 482 AMAYTSMIHGFCKEGQVDKANILFQKMEENGCSPDLITYSILMRGFFESNKLEKVVQLLH 541

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 227
           RMIEKDVWPD GIYAIVEDMVCKDEKYKEWLDLLQ F VQKHRN YL
Sbjct: 542 RMIEKDVWPDAGIYAIVEDMVCKDEKYKEWLDLLQSFLVQKHRNAYL 588

[Close]

BLAST of Cucsat.G20633 vs. NCBI nr
Match: KAA0041973.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17909.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 440 bits (1132), Expect = 3.29e-150
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL++EMLHVGMWPD+KTSGVLLKALFLAGKV+DAKELFRVIKPYA+P+DLCICCIFLDG
Sbjct: 362 MKLYSEMLHVGMWPDMKTSGVLLKALFLAGKVNDAKELFRVIKPYAIPEDLCICCIFLDG 421

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG  FEAMKLFNEL+SYNMKLDIETFGCLIDGLCKAGKLETAWELF+KL +EGIQPD
Sbjct: 422 LCKNGCFFEAMKLFNELKSYNMKLDIETFGCLIDGLCKAGKLETAWELFDKLSKEGIQPD 481

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
           AMAY+SMIHGFCK+GQVDKANILFQKMEENGCSPDLITYSILMRGF+ESNKLEKVVQLLH
Sbjct: 482 AMAYTSMIHGFCKEGQVDKANILFQKMEENGCSPDLITYSILMRGFFESNKLEKVVQLLH 541

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 227
           RMIEKDVWPD GIYAIVEDMVCKDEKYKEWLDLLQ F VQKHRN YL
Sbjct: 542 RMIEKDVWPDAGIYAIVEDMVCKDEKYKEWLDLLQSFLVQKHRNAYL 588

[Close]

BLAST of Cucsat.G20633 vs. NCBI nr
Match: XP_008447180.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 [Cucumis melo])

HSP 1 Score: 345 bits (885), Expect = 7.13e-115
Identity = 165/223 (73.99%), Postives = 192/223 (86.10%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL+ +MLHVG WPD+KT  VLLK LFLAGKV DAK+LF VIKPYA+P++L IC +FLDG
Sbjct: 214 MKLYYKMLHVGKWPDMKTFSVLLKGLFLAGKVCDAKKLFGVIKPYAVPENLYICGVFLDG 273

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG +FEAM+LFNEL+SYNMKLDIE+F CLIDGLCKA KLETAWELFEKL +EG+QPD
Sbjct: 274 LCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPD 333

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            + Y  MI+GFCK GQVD ANILFQ MEENGC+P+L TY  LM GFY++NKLE+VVQLLH
Sbjct: 334 VVTYCIMINGFCKDGQVDNANILFQMMEENGCTPNLHTYHALMHGFYKNNKLEEVVQLLH 393

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHR 223
           +MI+KDV    GIY IVEDMV KDE+Y+EWLD+LQRF VQKH+
Sbjct: 394 KMIQKDVSLAAGIYTIVEDMVSKDERYREWLDILQRFPVQKHQ 436

[Close]

BLAST of Cucsat.G20633 vs. NCBI nr
Match: XP_031744955.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X3 [Cucumis sativus])

HSP 1 Score: 343 bits (879), Expect = 2.69e-114
Identity = 163/222 (73.42%), Postives = 191/222 (86.04%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL+NEML VG WPD+KT  VLLK LFLAGKV DAK+LF V+KP+A+PK+L IC +FLDG
Sbjct: 190 MKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLDG 249

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG +FEAM+LFNEL+SYNMKLDIE+F CLIDGLCKA KLETAWELFEKL +EG+QPD
Sbjct: 250 LCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPD 309

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            + Y  MI+GFCK GQVD ANILFQ MEENGC+P+L+TYS L+ GFY++NKLE+VV+LLH
Sbjct: 310 VVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLH 369

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKH 222
           +MI+KDV     IY IVEDMV KDEK +EWLD+LQRF VQKH
Sbjct: 370 KMIQKDVSLAASIYTIVEDMVSKDEKCREWLDILQRFPVQKH 411

[Close]

BLAST of Cucsat.G20633 vs. ExPASy TrEMBL
Match: A0A0A0K8T9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G221870 PE=4 SV=1)

HSP 1 Score: 476 bits (1226), Expect = 4.13e-170
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG
Sbjct: 8   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 67

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD
Sbjct: 68  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 127

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
           AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH
Sbjct: 128 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 187

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 227
           RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL
Sbjct: 188 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 234

[Close]

BLAST of Cucsat.G20633 vs. ExPASy TrEMBL
Match: A0A5A7TFJ3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001980 PE=4 SV=1)

HSP 1 Score: 440 bits (1132), Expect = 1.59e-150
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL++EMLHVGMWPD+KTSGVLLKALFLAGKV+DAKELFRVIKPYA+P+DLCICCIFLDG
Sbjct: 362 MKLYSEMLHVGMWPDMKTSGVLLKALFLAGKVNDAKELFRVIKPYAIPEDLCICCIFLDG 421

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG  FEAMKLFNEL+SYNMKLDIETFGCLIDGLCKAGKLETAWELF+KL +EGIQPD
Sbjct: 422 LCKNGCFFEAMKLFNELKSYNMKLDIETFGCLIDGLCKAGKLETAWELFDKLSKEGIQPD 481

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
           AMAY+SMIHGFCK+GQVDKANILFQKMEENGCSPDLITYSILMRGF+ESNKLEKVVQLLH
Sbjct: 482 AMAYTSMIHGFCKEGQVDKANILFQKMEENGCSPDLITYSILMRGFFESNKLEKVVQLLH 541

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 227
           RMIEKDVWPD GIYAIVEDMVCKDEKYKEWLDLLQ F VQKHRN YL
Sbjct: 542 RMIEKDVWPDAGIYAIVEDMVCKDEKYKEWLDLLQSFLVQKHRNAYL 588

[Close]

BLAST of Cucsat.G20633 vs. ExPASy TrEMBL
Match: A0A1S3BGA8 (pentatricopeptide repeat-containing protein At1g62720-like OS=Cucumis melo OX=3656 GN=LOC103489704 PE=4 SV=1)

HSP 1 Score: 440 bits (1132), Expect = 1.59e-150
Identity = 208/227 (91.63%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL++EMLHVGMWPD+KTSGVLLKALFLAGKV+DAKELFRVIKPYA+P+DLCICCIFLDG
Sbjct: 362 MKLYSEMLHVGMWPDMKTSGVLLKALFLAGKVNDAKELFRVIKPYAIPEDLCICCIFLDG 421

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG  FEAMKLFNEL+SYNMKLDIETFGCLIDGLCKAGKLETAWELF+KL +EGIQPD
Sbjct: 422 LCKNGCFFEAMKLFNELKSYNMKLDIETFGCLIDGLCKAGKLETAWELFDKLSKEGIQPD 481

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
           AMAY+SMIHGFCK+GQVDKANILFQKMEENGCSPDLITYSILMRGF+ESNKLEKVVQLLH
Sbjct: 482 AMAYTSMIHGFCKEGQVDKANILFQKMEENGCSPDLITYSILMRGFFESNKLEKVVQLLH 541

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHRNGYL 227
           RMIEKDVWPD GIYAIVEDMVCKDEKYKEWLDLLQ F VQKHRN YL
Sbjct: 542 RMIEKDVWPDAGIYAIVEDMVCKDEKYKEWLDLLQSFLVQKHRNAYL 588

[Close]

BLAST of Cucsat.G20633 vs. ExPASy TrEMBL
Match: A0A1S3BHP4 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489690 PE=4 SV=1)

HSP 1 Score: 345 bits (885), Expect = 3.45e-115
Identity = 165/223 (73.99%), Postives = 192/223 (86.10%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL+ +MLHVG WPD+KT  VLLK LFLAGKV DAK+LF VIKPYA+P++L IC +FLDG
Sbjct: 214 MKLYYKMLHVGKWPDMKTFSVLLKGLFLAGKVCDAKKLFGVIKPYAVPENLYICGVFLDG 273

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG +FEAM+LFNEL+SYNMKLDIE+F CLIDGLCKA KLETAWELFEKL +EG+QPD
Sbjct: 274 LCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPD 333

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            + Y  MI+GFCK GQVD ANILFQ MEENGC+P+L TY  LM GFY++NKLE+VVQLLH
Sbjct: 334 VVTYCIMINGFCKDGQVDNANILFQMMEENGCTPNLHTYHALMHGFYKNNKLEEVVQLLH 393

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHR 223
           +MI+KDV    GIY IVEDMV KDE+Y+EWLD+LQRF VQKH+
Sbjct: 394 KMIQKDVSLAAGIYTIVEDMVSKDERYREWLDILQRFPVQKHQ 436

[Close]

BLAST of Cucsat.G20633 vs. ExPASy TrEMBL
Match: A0A1S3BHF7 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489690 PE=4 SV=1)

HSP 1 Score: 345 bits (885), Expect = 3.92e-114
Identity = 165/223 (73.99%), Postives = 192/223 (86.10%), Query Frame = 0


Query: 1   MKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDG 60
           MKL+ +MLHVG WPD+KT  VLLK LFLAGKV DAK+LF VIKPYA+P++L IC +FLDG
Sbjct: 293 MKLYYKMLHVGKWPDMKTFSVLLKGLFLAGKVCDAKKLFGVIKPYAVPENLYICGVFLDG 352

Query: 61  LCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEGIQPD 120
           LCKNG +FEAM+LFNEL+SYNMKLDIE+F CLIDGLCKA KLETAWELFEKL +EG+QPD
Sbjct: 353 LCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPD 412

Query: 121 AMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLH 180
            + Y  MI+GFCK GQVD ANILFQ MEENGC+P+L TY  LM GFY++NKLE+VVQLLH
Sbjct: 413 VVTYCIMINGFCKDGQVDNANILFQMMEENGCTPNLHTYHALMHGFYKNNKLEEVVQLLH 472

Query: 181 RMIEKDVWPDDGIYAIVEDMVCKDEKYKEWLDLLQRFFVQKHR 223
           +MI+KDV    GIY IVEDMV KDE+Y+EWLD+LQRF VQKH+
Sbjct: 473 KMIQKDVSLAAGIYTIVEDMVSKDERYREWLDILQRFPVQKHQ 515

The following BLAST results are available for this feature:

BLAST of Cucsat.G20633 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQ83	4.3e-36	35.98	Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidop...	[more]
P0C7Q7	6.9e-34	35.51	Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS...	[more]
Q9SXD1	6.9e-34	35.05	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]
Q0WKV3	5.8e-33	35.51	Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidop...	[more]
Q9ASZ8	5.8e-33	35.51	Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana OX...	[more]

BLAST of Cucsat.G20633 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745146.1	1.78e-165	100.00	pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X1 ...	[more]
XP_008447194.1	3.29e-150	91.63	PREDICTED: pentatricopeptide repeat-containing protein At1g62720-like [Cucumis m...	[more]
KAA0041973.1	3.29e-150	91.63	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17909...	[more]
XP_008447180.1	7.13e-115	73.99	PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-...	[more]
XP_031744955.1	2.69e-114	73.42	pentatricopeptide repeat-containing protein At3g22470, mitochondrial isoform X3 ...	[more]

BLAST of Cucsat.G20633 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8T9	4.13e-170	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G221870 PE=4 SV=1	[more]
A0A5A7TFJ3	1.59e-150	91.63	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BGA8	1.59e-150	91.63	pentatricopeptide repeat-containing protein At1g62720-like OS=Cucumis melo OX=36...	[more]
A0A1S3BHP4	3.45e-115	73.99	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isofor...	[more]
A0A1S3BHF7	3.92e-114	73.99	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like isofor...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 76..202 e-value: 2.5E-33 score: 117.8
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 4..75 e-value: 1.6E-24 score: 88.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 96..143 e-value: 5.6E-17 score: 61.7 coord: 10..59 e-value: 2.8E-20 score: 72.3
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 13..47 e-value: 1.5E-12 score: 44.8 coord: 48..74 e-value: 2.1E-5 score: 22.4 coord: 100..132 e-value: 4.2E-10 score: 37.2 coord: 134..164 e-value: 7.7E-6 score: 23.8
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 11..45 score: 13.942831
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 97..131 score: 13.811296
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 46..80 score: 10.029647
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 132..166 score: 10.862706
None	No IPR available	PANTHER	PTHR45613	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN	coord: 8..193
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 17..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G20633.T3	Cucsat.G20633.T3	mRNA
Cucsat.G20633.T2	Cucsat.G20633.T2	mRNA
Cucsat.G20633.T1	Cucsat.G20633.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding