Cucsat.G19683 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G19683
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Mechanosensitive channel of smallconductance-like 4
Location	ctg4: 4966331 .. 4967708 (-)
RNA-Seq Expression	Cucsat.G19683
Synteny	Cucsat.G19683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GACAATTGTTTATGTTTGTAATCATTTCATACTAGTAAAGTCACTTACAGAGAAGCAATTTCTCTTCCTTCATCTACAATGAGCATTAACATATATATAAGATCAAGCAATAGGTTTAACCTGTTTTCACCTGAAGCCAAACGATCCAGCAAATCATTCAACTCATTAATCGTTAGACCACCAGGGGTCATTCCTTGCCTGCGCTGCAATACCTATAGCAAGAAAAAGAAGGTAACAAATCTTTGCTGACAAACTGTCCTATATTGCTATCAACAAACTTCAACAATTATAATATGTTGGAAGTACGTTTTTATGCTTTTTTTGTGTGTGTCAACAACTTTCATTTTAGAAAAAAAAAAAAGACTAAGTGAACTTGTTGGATTATTTTTTTTGTAGCATTCAAAATTGATTTCCATCACGGTGTATTTGTTGAGGACCACTTGGGTGGTTGTTCCATTCTGGCCTAAAGTTCATGCTAGGAGGGAGAGTCCTACCCTTTTTGAAGACTTTGGGACTGAAACTTAATGCTTGTGAAATTAACACTCACTAGAGAACGTTCATTTAAGCTTCTAACAGGAGTATAGGTACTATAGAGTTCTGATTGTAACTTATCAAATCCACAATAAAAATTATGGTTGGTCTTAAAGAGGCTGATGAAGTGACAATTGTTTCAAAAGTATCTACCGTGGTTCAAAGTCTACCGTTCTCCATTTCCTTACTAAAAGAATAAACAGACAAAAACTCAGCATACCACAGACACCGAATAATTCATGGTCATTAACATTCACCAAAGTACAGGAATTCACCAACAATTTGACTTTGAGCAATGGAAGAAAAGGAAAAGAAAAAGAAAAGCAGGGCTGACCTCAGCCGCAACAAGAGCGAAATTACCGGCATTAGCACCAGTCTTAGCACCACCTTTACGCCAGTTGATAAGACGAAGAGCGTCCTCGGAGTCTCTAGACATGCCGAGAGCATCAATGAGGCAAGTGGCAAGTACAGATTCCTTGAGACCATAGGTGCCGCGCTCTCGATCAAGGCTAGGAAGAATCAAGCGGATGGCGGAAAAATAGTGAGAAGGAGAGCAGAAAGTGTCGAGAAACTTACGGAACTTGGAACGCTTCTTGGCGGAAGATTTGCTACGCTGAATCCAATCAAAGAGACTTGAAAGAACAGCGAACTTGATGGGCTCCGGCATAGCGAAGCCAAAGAAGTAAGAGAAGGTGTTGGTCTTGGAGAGTTGAGATTGAGAAAGTCAAGCGGTTCCAATGAAGAACTTGCGTGGCTTGTCCTCTAAGAATTGCATTGCATTGCCATTGCAATTTGCAAGTTCCCCTCGCCTACTCTACAATCTCTTTTCTTTTTCAATACATTTTAA

Coding sequence (CDS)

ATGGAAGAAAAGGAAAAGAAAAAGAAAAGCAGGGCTGACCTCAGCCGCAACAAGAGCGAAATTACCGGCATTAGCACCAGTCTTAGCACCACCTTTACGCCAGTTGATAAGACGAAGAGCGTCCTCGGAGTCTCTAGACATGCCGAGAGCATCAATGAGGCAAGTGGCAAGTACAGATTCCTTGAGACCATAGGTGCCGCGCTCTCGATCAAGGCTAGGAAGAATCAAGCGGATGGCGGAAAAATAGTGAGAAGGAGAGCAGAAAGTGTCGAGAAACTTACGGAACTTGGAACGCTTCTTGGCGGAAGATTTGCTACGCTGAATCCAATCAAAGAGACTTGA

Protein sequence

MEEKEKKKKSRADLSRNKSEITGISTSLSTTFTPVDKTKSVLGVSRHAESINEASGKYRFLETIGAALSIKARKNQADGGKIVRRRAESVEKLTELGTLLGGRFATLNPIKET

Homology

[Close]

BLAST of Cucsat.G19683 vs. NCBI nr
Match: KAG2692006.1 (hypothetical protein I3760_08G032900 [Carya illinoinensis])

HSP 1 Score: 90.5 bits (223), Expect = 2.55e-20
Identity = 44/75 (58.67%), Postives = 60/75 (80.00%), Query Frame = 0


Query: 39  KSVLGVSRHAESINEASGKYRFLETIGAALSIKARKNQADGGKIVRRRAESVEKLTELGT 98
           + ++GV+ HAES++EA G+   L+TIGAALS++ RK+QADG ++V R AE VE+L ELGT
Sbjct: 40  EGIVGVAGHAESVDEAGGEDGLLKTIGAALSVEVRKDQADGAEVVARIAEGVEELAELGT 99

Query: 99  LLGGRFATLNPIKET 113
           LLGGR A L+P +ET
Sbjct: 100 LLGGRLAPLHPSEET 114

[Close]

BLAST of Cucsat.G19683 vs. NCBI nr
Match: GER26939.1 (mechanosensitive channel of smallconductance-like 4 [Striga asiatica])

HSP 1 Score: 60.8 bits (146), Expect = 3.94e-08
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 14  LSRNKSEITGISTSLSTTFTPVDKTKSVLGVSRHAESINEASGKYRFLETIGAALSIKAR 73
           L  N+ E+ G  T L     PV++   V GV+RHAE + EA G+    +++ + L+    
Sbjct: 19  LGGNEREVPGEVTRLGPALAPVEEALRVRGVARHAEGVYEARGQNVLAQSVRSPLA---- 78

Query: 74  KNQADGGKIVRR---RAESVEKLTELGTLLGGRFATLNPIKE 112
            +QADG ++V      AE V+KL E GTL GGR A L+P+++
Sbjct: 79  -DQADGREVVVAVLGAAEGVKKLPEFGTLDGGRLALLHPVEQ 115

[Close]

BLAST of Cucsat.G19683 vs. ExPASy TrEMBL
Match: A0A5A7P2H1 (Mechanosensitive channel of smallconductance-like 4 OS=Striga asiatica OX=4170 GN=STAS_02616 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.91e-08
Identity = 39/102 (38.24%), Postives = 59/102 (57.84%), Query Frame = 0


Query: 14  LSRNKSEITGISTSLSTTFTPVDKTKSVLGVSRHAESINEASGKYRFLETIGAALSIKAR 73
           L  N+ E+ G  T L     PV++   V GV+RHAE + EA G+    +++ + L+    
Sbjct: 19  LGGNEREVPGEVTRLGPALAPVEEALRVRGVARHAEGVYEARGQNVLAQSVRSPLA---- 78

Query: 74  KNQADGGKIVRR---RAESVEKLTELGTLLGGRFATLNPIKE 112
            +QADG ++V      AE V+KL E GTL GGR A L+P+++
Sbjct: 79  -DQADGREVVVAVLGAAEGVKKLPEFGTLDGGRLALLHPVEQ 115

The following BLAST results are available for this feature:

BLAST of Cucsat.G19683 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G19683 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG2692006.1	2.55e-20	58.67	hypothetical protein I3760_08G032900 [Carya illinoinensis]	[more]
GER26939.1	3.94e-08	38.24	mechanosensitive channel of smallconductance-like 4 [Striga asiatica]	[more]

BLAST of Cucsat.G19683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7P2H1	1.91e-08	38.24	Mechanosensitive channel of smallconductance-like 4 OS=Striga asiatica OX=4170 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G19683.T1	Cucsat.G19683.T1	mRNA