Cucsat.G18847 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18847
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Nucleoside-diphosphate kinase
Location	ctg3412: 418564 .. 419254 (-)
RNA-Seq Expression	Cucsat.G18847
Synteny	Cucsat.G18847

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGTAGCTGCCCTCCAAGGCATTTCCTTTGCAAAATGAAGGTGAGTTTAATTTTAAACAAATGTTGCATGTGTTTTATCTGTTTGTTTTCTTTTTCTTGATCTCCTTCTTTTTTTTTTTTTTTCTGAATAACCCCTTTAATTTTGGTGATTTTGTTTTTGGGTTTCAGTTGTTGAGTTGGATGCAAAGTAAACTCCAAGGAAAAGTAAAATTTCAGAACAAAGGATCATATAATTCTTCAAACCCTTCAAGTAATGTTAATTTGCACTATACTTTAATTTTTTCAAGTAATCAAAAAATATTTACTTTACTACTAACTCATTATTTTACATTACATGATTATGATATATATACACATATGCCATATCATAAACAAACCAGCTATTGAGCAACCAGCTGAAGAATCCAGTGCTTCCTTGCCTCTTGGGTTACTAGCAATTGGAACTTTTGGCAACAATATTAACGAGTTGAAAGTAGTGAAGACCGATGACGAAAACGCTGTCATCGATGCTAAATCTACATTGAATGAAACCGACGATGACAACGACGGTTCTCTTGAAGGTGTCCCCGAATTAGAAGAGGAGTTGGCAAAACTTTGGCAGCAGAACTCTGCACTTCGTGAAGAGGAAAGTGATGATTTTGATGATGACCAAATAGAAGAACAAATTGTGAAAAAGAACGTTGGTTTGG

Coding sequence (CDS)

ATGAAGTTGTTGAGTTGGATGCAAAGTAAACTCCAAGGAAAAGTAAAATTTCAGAACAAAGGATCATATAATTCTTCAAACCCTTCAACTATTGAGCAACCAGCTGAAGAATCCAGTGCTTCCTTGCCTCTTGGGTTACTAGCAATTGGAACTTTTGGCAACAATATTAACGAGTTGAAAGTAGTGAAGACCGATGACGAAAACGCTGTCATCGATGCTAAATCTACATTGAATGAAACCGACGATGACAACGACGGTTCTCTTGAAGGTGTCCCCGAATTAGAAGAGGAGTTGGCAAAACTTTGGCAGCAGAACTCTGCACTTCGTGAAGAGGAAAGTGATGATTTTGATGATGACCAAATAGAAGAACAAATTGTGAAAAAGAACGTTGGTTTG

Protein sequence

MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIVKKNVGL

Homology

[Close]

BLAST of Cucsat.G18847 vs. ExPASy Swiss-Prot
Match: A0A251PW43 (Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 9.6e-04
Identity = 41/114 (35.96%), Postives = 58/114 (50.88%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKL  WMQ+KL GK   +   +   +     ++P EE S   P GLLAIGTFGNN  +  
Sbjct: 1   MKLFGWMQNKLNGKQGNKKPNTVPITTHPAKQEPREEFS-DWPHGLLAIGTFGNNDLKEN 60

Query: 61  VVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESD 115
             ++ D    I    T +E   DN  + E V +L +EL KL  +   + +E +D
Sbjct: 61  AAESQD----IQEDPTSSEEILDN-FTPEEVGKLHKELTKLLTRKPNIEKEIAD 108

[Close]

BLAST of Cucsat.G18847 vs. NCBI nr
Match: KGN58611.2 (hypothetical protein Csa_001406 [Cucumis sativus])

HSP 1 Score: 251 bits (641), Expect = 2.40e-82
Identity = 131/132 (99.24%), Postives = 132/132 (100.00%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK
Sbjct: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60

Query: 61  VVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ 120
           VVKTDDENA+IDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ
Sbjct: 61  VVKTDDENAIIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ 120

Query: 121 IEEQIVKKNVGL 132
           IEEQIVKKNVGL
Sbjct: 121 IEEQIVKKNVGL 132

[Close]

BLAST of Cucsat.G18847 vs. NCBI nr
Match: XP_031739135.1 (uncharacterized protein LOC105434935 [Cucumis sativus])

HSP 1 Score: 239 bits (609), Expect = 1.46e-77
Identity = 125/126 (99.21%), Postives = 126/126 (100.00%), Query Frame = 0


Query: 7   MQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDD 66
           MQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDD
Sbjct: 1   MQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDD 60

Query: 67  ENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIV 126
           ENA+IDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIV
Sbjct: 61  ENAIIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIV 120

Query: 127 KKNVGL 132
           KKNVGL
Sbjct: 121 KKNVGL 126

[Close]

BLAST of Cucsat.G18847 vs. NCBI nr
Match: KAA0053495.1 (uncharacterized protein E6C27_scaffold190G00460 [Cucumis melo var. makuwa] >TYK19097.1 uncharacterized protein E5676_scaffold522G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 226 bits (576), Expect = 6.96e-73
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNN N++K
Sbjct: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNTNDVK 60

Query: 61  VVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ 120
           V+KTD ENAVIDAKST NETDDDND SL+ VPELEEEL KLWQQNS  REEESDDFDDDQ
Sbjct: 61  VLKTDVENAVIDAKSTSNETDDDNDSSLKDVPELEEELTKLWQQNSQFREEESDDFDDDQ 120

Query: 121 IEEQIVKKNVGL 132
            EEQ+VKKN+GL
Sbjct: 121 TEEQVVKKNIGL 132

[Close]

BLAST of Cucsat.G18847 vs. NCBI nr
Match: XP_008460313.1 (PREDICTED: uncharacterized protein LOC103499172 [Cucumis melo])

HSP 1 Score: 226 bits (576), Expect = 1.73e-72
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNN N++K
Sbjct: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNTNDVK 60

Query: 61  VVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ 120
           V+KTD ENAVIDAKST NETDDDND SL+ VPELEEEL KLWQQNS  REEESDDFDDDQ
Sbjct: 61  VLKTDVENAVIDAKSTSNETDDDNDSSLKDVPELEEELTKLWQQNSQFREEESDDFDDDQ 120

Query: 121 IEEQIVKKNVGL 132
            EEQ+VKKN+GL
Sbjct: 121 TEEQVVKKNIGL 132

[Close]

BLAST of Cucsat.G18847 vs. NCBI nr
Match: XP_038889127.1 (protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like [Benincasa hispida])

HSP 1 Score: 150 bits (379), Expect = 1.68e-42
Identity = 90/132 (68.18%), Postives = 106/132 (80.30%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKLLSWMQSKLQGKVKFQNKGS+++S+   IEQ  E S   LPLGLLAIGTFGNN N L 
Sbjct: 1   MKLLSWMQSKLQGKVKFQNKGSHSNSS---IEQLEETSP--LPLGLLAIGTFGNN-NVLN 60

Query: 61  VVKTDD-ENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDD 120
           V+KT D EN V+DA+S   ET+D+  GSLE +P+LEEEL +LWQQN+ L EEE+DDFD+D
Sbjct: 61  VLKTTDAENTVVDARSPSKETEDEG-GSLEDIPKLEEELRELWQQNTQLGEEETDDFDND 120

Query: 121 QIEEQIVKKNVG 131
           Q EEQ VKKN+G
Sbjct: 121 QTEEQGVKKNIG 125

[Close]

BLAST of Cucsat.G18847 vs. ExPASy TrEMBL
Match: A0A5A7UIH7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold522G00100 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 3.37e-73
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNN N++K
Sbjct: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNTNDVK 60

Query: 61  VVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ 120
           V+KTD ENAVIDAKST NETDDDND SL+ VPELEEEL KLWQQNS  REEESDDFDDDQ
Sbjct: 61  VLKTDVENAVIDAKSTSNETDDDNDSSLKDVPELEEELTKLWQQNSQFREEESDDFDDDQ 120

Query: 121 IEEQIVKKNVGL 132
            EEQ+VKKN+GL
Sbjct: 121 TEEQVVKKNIGL 132

[Close]

BLAST of Cucsat.G18847 vs. ExPASy TrEMBL
Match: A0A1S3CCN5 (uncharacterized protein LOC103499172 OS=Cucumis melo OX=3656 GN=LOC103499172 PE=3 SV=1)

HSP 1 Score: 226 bits (576), Expect = 8.37e-73
Identity = 117/132 (88.64%), Postives = 123/132 (93.18%), Query Frame = 0


Query: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINELK 60
           MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNN N++K
Sbjct: 1   MKLLSWMQSKLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNTNDVK 60

Query: 61  VVKTDDENAVIDAKSTLNETDDDNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQ 120
           V+KTD ENAVIDAKST NETDDDND SL+ VPELEEEL KLWQQNS  REEESDDFDDDQ
Sbjct: 61  VLKTDVENAVIDAKSTSNETDDDNDSSLKDVPELEEELTKLWQQNSQFREEESDDFDDDQ 120

Query: 121 IEEQIVKKNVGL 132
            EEQ+VKKN+GL
Sbjct: 121 TEEQVVKKNIGL 132

[Close]

BLAST of Cucsat.G18847 vs. ExPASy TrEMBL
Match: A0A0A0L9D5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645860 PE=3 SV=1)

HSP 1 Score: 216 bits (550), Expect = 1.03e-68
Identity = 124/170 (72.94%), Postives = 126/170 (74.12%), Query Frame = 0


Query: 7   MQSKLQGKVKFQNKGSYNSSNPST------------------------------------ 66
           MQSKLQGKVKFQNKGSYNSSNPS+                                    
Sbjct: 1   MQSKLQGKVKFQNKGSYNSSNPSSNVNLHYTLIFSSNQKIFTLLLTHYFTLHDYDIYIYI 60

Query: 67  --------IEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDDENAVIDAKSTLNETDD 126
                   IEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDDENA+IDAKSTLNETDD
Sbjct: 61  CHIINKPAIEQPAEESSASLPLGLLAIGTFGNNINELKVVKTDDENAIIDAKSTLNETDD 120

Query: 127 DNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIVKKNVGL 132
           DNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIVKKNVGL
Sbjct: 121 DNDGSLEGVPELEEELAKLWQQNSALREEESDDFDDDQIEEQIVKKNVGL 170

[Close]

BLAST of Cucsat.G18847 vs. ExPASy TrEMBL
Match: A0A6J1IUE0 (uncharacterized protein LOC111480009 OS=Cucurbita maxima OX=3661 GN=LOC111480009 PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.94e-19
Identity = 58/83 (69.88%), Postives = 65/83 (78.31%), Query Frame = 0


Query: 1  MKLLSWMQS-KLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINEL 60
          MK LSWMQS KL GKVKFQNK S  +SNPS IEQP EE+S SLPLGLLAIGTFGNN+  L
Sbjct: 1  MKFLSWMQSNKLHGKVKFQNKSS--NSNPS-IEQP-EETSPSLPLGLLAIGTFGNNV--L 60

Query: 61 KVVKTDDENAVIDAKSTLNETDD 82
          +  KTD EN V+DA+S   ET+D
Sbjct: 61 RTNKTDVENVVVDARSLGKETED 77

[Close]

BLAST of Cucsat.G18847 vs. ExPASy TrEMBL
Match: A0A6J1GV88 (uncharacterized protein LOC111457786 OS=Cucurbita moschata OX=3662 GN=LOC111457786 PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.59e-18
Identity = 56/83 (67.47%), Postives = 64/83 (77.11%), Query Frame = 0


Query: 1  MKLLSWMQS-KLQGKVKFQNKGSYNSSNPSTIEQPAEESSASLPLGLLAIGTFGNNINEL 60
          MK LSWMQS KL G+VKFQNK S  +SNPS IEQP EE+S SLPLGLLAIGTFGNN+  L
Sbjct: 1  MKFLSWMQSNKLHGRVKFQNKSS--NSNPS-IEQP-EETSPSLPLGLLAIGTFGNNV--L 60

Query: 61 KVVKTDDENAVIDAKSTLNETDD 82
          +  KTD EN V+DA+S   E +D
Sbjct: 61 RTNKTDVENVVVDARSPGKEMED 77

The following BLAST results are available for this feature:

BLAST of Cucsat.G18847 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A251PW43	9.6e-04	35.96	Protein DEEPER ROOTING 1 OS=Prunus persica OX=3760 GN=DRO1 PE=2 SV=1	[more]

BLAST of Cucsat.G18847 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58611.2	2.40e-82	99.24	hypothetical protein Csa_001406 [Cucumis sativus]	[more]
XP_031739135.1	1.46e-77	99.21	uncharacterized protein LOC105434935 [Cucumis sativus]	[more]
KAA0053495.1	6.96e-73	88.64	uncharacterized protein E6C27_scaffold190G00460 [Cucumis melo var. makuwa] >TYK1...	[more]
XP_008460313.1	1.73e-72	88.64	PREDICTED: uncharacterized protein LOC103499172 [Cucumis melo]	[more]
XP_038889127.1	1.68e-42	68.18	protein NEGATIVE GRAVITROPIC RESPONSE OF ROOTS-like [Benincasa hispida]	[more]

BLAST of Cucsat.G18847 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UIH7	3.37e-73	88.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CCN5	8.37e-73	88.64	uncharacterized protein LOC103499172 OS=Cucumis melo OX=3656 GN=LOC103499172 PE=...	[more]
A0A0A0L9D5	1.03e-68	72.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645860 PE=3 SV=1	[more]
A0A6J1IUE0	2.94e-19	69.88	uncharacterized protein LOC111480009 OS=Cucurbita maxima OX=3661 GN=LOC111480009...	[more]
A0A6J1GV88	6.59e-18	67.47	uncharacterized protein LOC111457786 OS=Cucurbita moschata OX=3662 GN=LOC1114577...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 91..111
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..37
None	No IPR available	PANTHER	PTHR34045:SF3	OS03G0406300 PROTEIN	coord: 3..112
IPR044683	LAZY family	PANTHER	PTHR34045	OS03G0406300 PROTEIN	coord: 3..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18847.T1	Cucsat.G18847.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009630	gravitropism
biological_process	GO:0040008	regulation of growth
biological_process	GO:0009627	systemic acquired resistance
molecular_function	GO:0005504	fatty acid binding