Cucsat.G18630 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18630
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	ABC transporter family protein
Location	ctg3379: 2578757 .. 2579808 (-)
RNA-Seq Expression	Cucsat.G18630
Synteny	Cucsat.G18630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TAACCTCAACACGCGGCTGCCATTCTTTTCTAAGCTTTTTCTTCATCTTCTTCTCCGACGTGCGACCAAACCGGTCGCCGGATTCTTCCAATCTTCCAATTAAACCGATCACCGTAGAGCGAGATTGAGTGCCCAAATGGCGTACTGCTCAGCTTTCACAACGGCGATGTCAATGGCATACGGCTCTTCATCCTTTACCACATCCACTACTTCTCTGGTCCCATATTTACCGTCAAACTCTACTTTGTCCATGATGACTACCTTTTCCCATCTCCCTTTTCGTTTCAATCTTCGTCGTTCAGTTCGAATTGCAACAGCTTCTCTCTCCGCAGTCAATTCTCCGTCTACTAGTTTCTCTGACAGTCAGAAGAGTCTTTTGCTGGAAGTTAAGGATTTGACTGCTGTAATTGCAGAAACCAAGCAAGAGATTCTCAAGGGTGTTAATCTTGTTGTTTACGAAGGAGAGGTTGGCTCAAAATTAATCTTTAGTATTGTTTTAGGAGTGGATTCTCACAAGGTTTTAAATTTTTCATTGATTTTTTGTTCATTTGGAATTATTTTTTCTGACCCTAGTAGGTTCACGCCATCATGGGCAAGAATGGTTCTGGAAAGAGCACATTTGCAAAGGTCAGTATTGTTTGTGTTCATTTCTCTAATTCTCATCAAGAAAAAAAGGATTTCTGGCGTTCTTTATAGTAATGAGCTTTGAGCTTAGAAGTTCATTAGTTTCTTTTGCTTCAATTTGTACTTGGAAATGGAATTTTTTTCATCTTTGTTTTAACTTTTAGTATAGTCCATAAAGCTCAATTACTATGGTCAAATGTGTTAAAGCTTTGTTATCATATATTATTATCATCCAAAGCCGAAGTACTATGGTGTCAAATACAATTTAAGCTTTGATATAAAAAATTTGGTTGGAGCATAACCAGAGAGTTTTCCTTGACAAGTCTATTGACTGGTTTCATCGTTTTGGTTCAGCTCGTCTTCTAGCTTCTTCATGGTGTTCACAATCCAAGTTTTTTGCTGATTATTCCATAGAGGATATTTGTCTAAACTAGAGTCCTTTTATTTCTGCGGTTTAATTATGCCAATTTGTATTTTAATTTTATTAATCGTGTCTTGGATCGTGAGCTCAGTCTCTCTTCATTATGCCAAGGAAAAATATCGTTTCCTAATAAAAAAAAAGAAAGTACAGTGGGTGAAGCTCCTCCAATTTCGCTGGAAACGACTACTTTTAAAATCTACATCTGTCCTGGATTGAATTTTTCCTTTCGTAGACAAAGGAAAGAACACATATATAGTTATCTTAGTCATTGAAATGCGTTATAATAGCCTCCCTGTTATTGTTAATCTGATTGGAGATTGGATTCTTCTGTTTTGTCCACTAAATTTAAATGACGATTTGTGGATTAAGGTACTTGTTGGGCACCCAGATTATGAGGTTACAGGCGGTAGTATTGTGTTTAAAGGAAGTGATTTGCTAGAAATGGAACCAGAAGAAAGGTCACTTGCAGGGTTATTTATGAGTTTTCAGTCACCGGTAGAGATTCCAGGTGTCAGCAATATTGACTTTCTAAATATGGCTTACAATGCACGAAGAAGAAAACTTGGTCTGGCAGAGCTGGGGCCAATTGAGGTATGCATTTTCAATGGAAGCACCCTTTTCTTGCTTTATCCATTTTCGGTTAAATGCGTACACAATGGAGTAAGAATTCACATATAAATTCCTTTTGCGTCTAACATTTAGTGAAATGCTGTTTTTTCTTTATTTTTTTTTATTTGATGCTATACAATCTTTCTTTAGATTAGTGAAAATTTAGAAGATGATTTGGTGTAAACCAATTCTCGGAGAAATTTCTTATTTTTCAATTTCCAGGAAACAGGTTGTGAATACACATATTTGTAGGCTGTACAGCAGCCTTTTACCAAGCAATAGCAAACCAAACTGTCAAATCCTAGGATCTGAACTAATCAAAACAACGTTTAACCAAAACTAAAGAAGTAACAAAGACCAACCAAGAAACTACAAAGACCCAAGAAGCCTCGGAAGAAATACAGGAAGGCTCTAAAGAAGTACAGCCTAAACTTCCTACCTCAAGATTACTCCAAAACTGGTGCAGAAGCCGACAGCGACAAGACAAAAAACGAGAATTTGCTTTTATTAAAATTAATAAAAGTTGCAAGATATGTTTGAATACCCATGTGTGCTTATGCATAGGCATCATGCAATCAATCAGCCTGTGTTTTGATGTGAATCCAACCATTGATACATTGCATGTATTTGAAGGAGCAATTACAAGGATCAAAGCAAAGAAGATTCAAGAGGAATTCACATTGCATCTTTAAAAACTAGCTAATACATAAGAAGAGAAATAATTTTGACCCAAATTTTATGTATAATGTTAGTTTAATAAATCAATAAGAGAATTGAGTGTAGATGCATGAGACTTTTGGAAGATCGCGTGGAGGACAAAAAAGTGTGCAGATTTTGTGAAGAAAGTGCTGTCAAGTGTGCACTACGTTGGAATTGTGATGTCATACCTAGTCAAACATGCACATTGCCTTCTAGAGAGTTATCTAAGACAATTTGAAGACTTTCTACATTTTAGTTTTGCATTTTGACTTATTAATTAATAATTAGTATGCAATTAAGTTTTAGTTCCCTAGGTCTTATTTTCTACAATATTCATATACTTGTATTTGAAAGCCTTTTGTGTTCTTAGGCCTTTACATGACCTTTTGCACTTTATAATATGGCTTTATTGATCTTCAAAACTCAAATTAATGATATTTAAACATTTTTTATTTATTCAACAATCAACCTCTTTGTTGGTTGTGGTGGTGTCTTTTTTTTTCCTCCCTTCAAATCTTGCTTTAGATTTGATGTTGAATTAGTTTGATGAAGCTAATTTTAGAGTGAGTTGTCTTTGGATCTAGATCTAGGAGTGACTATCATAGATTCTAGGTTCAATCTAAGAGTGATTCAGTCTTCTAAGCTCCGGGTTCGCAAGGATCCTGGAAGGACATCTAGCTTTGCATTAATCAAGCATTGATGACACTTATCATGTTTGTGTAATTTTTTTCCCATCTGGTCATTGTTCTCCAAGACATTTAGATATCAGCATAGGTTTTATCTCATCAATTGGGAACAGACAGAACTGACAAAATCCCATGCAGTGAAGAATTAAAAAACAAAATTGAAACCTCACTTCTCCAAATATCCTTGCACTCTATTAGGTTTTGATGAAATCAAATAAACAGGCATGTAAAAAATAGAACAAACCCATGCGGCAAAGCAAGATTTTGACACCCCAAGCATTGGGGCTTTGCAATGTAAGGAAAAGTCCTTGCTGTTGTTTTTGTTAGGCGACAATGGCTGGGATGATGGTGTCTACAAATGGCCACTTTAAGTTGGTGACCCAAACTTCAAACCCTAACCCCATTTGACAGAGAAGTGTTAGGTATCTCCTCCACCTGCGAATACGAAACCTCAACAAGAACTAACAGCATAGGGAAACATTCTCTGTTTTACTATTACAATAACACTACAATTTAGATATGCCTCATTGTATTTCAAAATAGAGAAACATATATATAGTTTAACAAGAGAACCTTAATTTAAAGGAAAGTACAGTGGCAGTAAAAGACAACTAGACAAAATAATATATATTATAGCATTAATTTTTATTGGTGCATGCATGTGTCTATGACTAGAATAAATTCTTCGGGCAATATAGCTTGAATGATGACCTTTTGTTCAATCAAATTCCAAATTTCTGTTCAGATTCGGAGAAATCAAGTATCACTTTTCATTGTGTTTCATTCTTTATTGGAATATCTAATTTCACGTTGATTACTCTACCTCTCGTAAATTGTAATTATTTAGTAATTTAAACTTTGGGCTGGTTGATTCACTTCTTCATTATGCTCCAGTTTTATGCATACATCTTCCCCAAACTTGATCTTGTGAACATGAAGACGGATTTTCTCAATCGAAATGTCAATGAAGGGTTTAGTGGTGGAGAAAGAAAGCGTAATGAGATCTTGCAACTTGCTGTAAGTTTACTATTTTTTCCTACCTTCCAGTGCTGTCTTTATTTTTACTGGAACTAATGTTTCTAATATAAGTATACTGAGTGGCACTGTACATATTATTTGTGTATTTATTATTATGATTGTTGATGATCCTGATGCTGAATCTGAAGTGTTTTGGGAGTGATAGCTCATTGGAAGGAGAGAGGGCTCTCTAGAATGGTCGACTGGTTCTTATGTTTTCTTGTTATTTTCCTTATCTTTTGTTTGCTCTGATGGGACATTTTGCAATGTTTTGGCGTGTGACTGTTGAACTTTTGTGGTTTTTGGTGATGAATTATTAGAAGCGGTAAAAGAAAATAGAGACCGAGTTATGTGAAAACTCAAGTACTGGGAGAAAAACCACGATCTGACCTTTTTATTATTATTTCTTATGAACAAAAGATACAAAGGGAAAAAATAAATAGACAACAAGCTTATGACAAAAAAGGAAGAAAATTAGGGTAAATCTTTCGTTGGACTAAGCCCACTAATTCTGACATGTATTAATAATAGAACACTGGGAGGTTGATATCCCCTGTTTTGGTGGTGTTTGGGTGTCCTTTTGTCGAACACTTATACACTTTTAAAGTTGTTGGACATGTATCATACACTTAATAGTAGAATAAATGTGTTTCCACACTAGTGATAATAGGTCCAACAATTGTTAGATATGCATCAAATACTTGTTAGTATTACTAGATAGACACATTTATATGAAAAAAACTACTAAAAATTTTGAAAGTAAAATATTTTCAACTAATTTTTGAAGCATAAATGCATAAACCCATTGACTTTGAATAATAAGTGGTTGGGAAAGGGAGGGAGATAATTGTGTTCTGCGCTTGGTAAGACTTAATTATGTACAAGAATCAAGACTATTATTGTTTCTCAAAGTGTCGATGTCTTTGCAGGTTTTGGGTGCAGAGATGGCTATATTAGACGAAATAGATTCTGGATTGGATGTTGATGCACTTCGTGATGTAGCAAAAGCAGTGAACGGCCTTTTGACACCAAATAATTCAGTGTTAATGATTACTCATTATCTACGACTTTTGGAATTTATCAAACCTTCTCGCATACATGTCATGGTAAGTATTTTGCACATTTGGAAAACATTCAATCAATATGATTGCTTTTGAAGATGGACAGAGATATATTCAATCTTTCTTCTTTTTCTGATTCTCTTCATTATGATAAGAACAATATGTAAAATGAAATGGAATAAAGAATCAATGCTGAAGTAGAAAACGAAAGAGAGATGATACACACTGATAATAATACGTTTTTTTCTTATAAGAAACAGATAGTCATACGTTAATACAGTGATGGGGTTTACTATATGTAAAGTTTGGGTTACATTTGTCATAATCACTTAAATTCCATATATTTGAAGTTTGTTCTGACAACACTGGGTTTCTTCTTATTTCTTGTTTTTATTCCATGTTTCCCTTTGCTTTCTGTGTGTGAAATTTGAATTTTTCTCGAGTAAATTGCCTTTGATGCACCATTGAAATTCACTACTGGTGACTGACTGAGTAGTTCTACATTTGATTTTTCAGGAGGATGGGAAAATTGTGAAAACTGGAGACATCTCTATAGCGAAACTCCTCGAGGAGGAAGGGTACAAAGCAATTTCTACTTCATAATTGTACGAACATTCTCCCTTCTTAACGTTCTCTTTTACTTATGAAAGTACTTTCTTTTACATAAAATTTTCCGTCAAATTTTTCTGTCCCAATTTTGGCATCTTAAATGTGCAAAATCTATAATGTAAGGTTTTAAATGTTTGATGTCGAGGTCTGACGGGAGTATCGAGTTTTCAACAAAATAATCAATATTGATGTATGTGTCTTGTATAATTTATAAACATAAAAACTTCATAAAAGAATATTTAAATTAACAAATAAGCATTTCACTCTTTTTAAAATCACTATACATTTCTGATTAG

Coding sequence (CDS)

ATGGCGTACTGCTCAGCTTTCACAACGGCGATGTCAATGGCATACGGCTCTTCATCCTTTACCACATCCACTACTTCTCTGGTCCCATATTTACCGTCAAACTCTACTTTGTCCATGATGACTACCTTTTCCCATCTCCCTTTTCGTTTCAATCTTCGTCGTTCAGTTCGAATTGCAACAGCTTCTCTCTCCGCAGTCAATTCTCCGTCTACTAGTTTCTCTGACAGTCAGAAGAGTCTTTTGCTGGAAGTTAAGGATTTGACTGCTGTAATTGCAGAAACCAAGCAAGAGATTCTCAAGGGTGTTAATCTTGTTGTTTACGAAGGAGAGGTTCACGCCATCATGGGCAAGAATGGTTCTGGAAAGAGCACATTTGCAAAGGTACTTGTTGGGCACCCAGATTATGAGGTTACAGGCGGTAGTATTGTGTTTAAAGGAAGTGATTTGCTAGAAATGGAACCAGAAGAAAGGTCACTTGCAGGGTTATTTATGAGTTTTCAGTCACCGGTAGAGATTCCAGGTGTCAGCAATATTGACTTTCTAAATATGGCTTACAATGCACGAAGAAGAAAACTTGGTCTGGCAGAGCTGGGGCCAATTGAGTTTTATGCATACATCTTCCCCAAACTTGATCTTGTGAACATGAAGACGGATTTTCTCAATCGAAATGTCAATGAAGGGTTTAGTGGTGGAGAAAGAAAGCGTAATGAGATCTTGCAACTTGCTGTTTTGGGTGCAGAGATGGCTATATTAGACGAAATAGATTCTGGATTGGATGTTGATGCACTTCGTGATGTAGCAAAAGCAGTGAACGGCCTTTTGACACCAAATAATTCAGTGTTAATGATTACTCATTATCTACGACTTTTGGAATTTATCAAACCTTCTCGCATACATGTCATGGAGGATGGGAAAATTGTGAAAACTGGAGACATCTCTATAGCGAAACTCCTCGAGGAGGAAGGGTACAAAGCAATTTCTACTTCATAA

Protein sequence

MAYCSAFTTAMSMAYGSSSFTTSTTSLVPYLPSNSTLSMMTTFSHLPFRFNLRRSVRIATASLSAVNSPSTSFSDSQKSLLLEVKDLTAVIAETKQEILKGVNLVVYEGEVHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSIVFKGSDLLEMEPEERSLAGLFMSFQSPVEIPGVSNIDFLNMAYNARRRKLGLAELGPIEFYAYIFPKLDLVNMKTDFLNRNVNEGFSGGERKRNEILQLAVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRIHVMEDGKIVKTGDISIAKLLEEEGYKAISTS

Homology

[Close]

BLAST of Cucsat.G18630 vs. ExPASy Swiss-Prot
Match: Q9CAF5 (ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ABCI6 PE=1 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 3.6e-33
Identity = 71/89 (79.78%), Postives = 83/89 (93.26%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAE+AILDEIDSGLDVDAL+DVAKAVNGLLTP NSVLMITHY RLL++IKP+ I
Sbjct: 249 LQLAVLGAELAILDEIDSGLDVDALQDVAKAVNGLLTPKNSVLMITHYQRLLDYIKPTLI 308

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAIS 107
           H+ME+G+I+KTGD S+AKLLE+EGYKAIS
Sbjct: 309 HIMENGRIIKTGDNSLAKLLEKEGYKAIS 337

[Close]

BLAST of Cucsat.G18630 vs. ExPASy Swiss-Prot
Match: P51241 (Probable ATP-dependent transporter ycf16 OS=Porphyra purpurea OX=2787 GN=ycf16 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.3e-19
Identity = 44/91 (48.35%), Postives = 71/91 (78.02%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + + +L + ++ILDE DSGLD+DAL+ +A+ +N L T  NS+++ITHY RLL++I P+ +
Sbjct: 161 LQMALLESNLSILDETDSGLDIDALKIIAQGINTLATSTNSIVLITHYQRLLDYIIPNFV 220

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 109
           H+M DGKIVKTG++++A+ LE+ GY  I ++
Sbjct: 221 HIMSDGKIVKTGNVNLAQDLEKHGYDWIKST 251

[Close]

BLAST of Cucsat.G18630 vs. ExPASy Swiss-Prot
Match: O78474 (Probable ATP-dependent transporter ycf16 OS=Guillardia theta OX=55529 GN=ycf16 PE=3 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 3.0e-19
Identity = 43/85 (50.59%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + + +L  ++A+LDE DSGLD+DALR VA  +  L    N++++ITHY RLL++IKP  +
Sbjct: 161 LQMSILDTKLAVLDETDSGLDIDALRTVANGIKSLANDGNAIILITHYQRLLDYIKPDFV 220

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGY 103
           HVM++GKI+KTG  S+A  LE+ GY
Sbjct: 221 HVMQEGKIIKTGSASLALDLEKYGY 245

[Close]

BLAST of Cucsat.G18630 vs. ExPASy Swiss-Prot
Match: Q00830 (Probable ATP-dependent transporter ycf16 OS=Trieres chinensis OX=1514140 GN=ycf16 PE=3 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-19
Identity = 40/86 (46.51%), Postives = 68/86 (79.07%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + + +L +E++ILDE DSGLD+DAL+ ++K +N  +  N ++++ITHY RLL++++P+ +
Sbjct: 163 LQMILLDSELSILDETDSGLDIDALKIISKGINTFMNQNKAIILITHYQRLLDYVQPNYV 222

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYK 104
           HVM++GKI+KTG   +AK LE +GY+
Sbjct: 223 HVMQNGKIIKTGTADLAKELESKGYE 248

[Close]

BLAST of Cucsat.G18630 vs. ExPASy Swiss-Prot
Match: Q02856 (Probable ATP-dependent transporter ycf16 OS=Antithamnion sp. OX=2767 GN=ycf16 PE=3 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.7e-19
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + + +L +++AILDE DSGLD+DAL+ +AK +N L T  NS+++ITHY RLL++IKP  I
Sbjct: 162 LQMSLLNSKLAILDETDSGLDIDALKTIAKQINSLKTQENSIILITHYQRLLDYIKPDYI 221

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGY 103
           HVM+ G+I+ TG    A  LE+ GY
Sbjct: 222 HVMQKGEIIYTGGSDTAMKLEKYGY 246

[Close]

BLAST of Cucsat.G18630 vs. NCBI nr
Match: XP_004146320.1 (ABC transporter I family member 6, chloroplastic [Cucumis sativus] >KGN65462.1 hypothetical protein Csa_020103 [Cucumis sativus])

HSP 1 Score: 166 bits (419), Expect = 6.12e-48
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           HVMEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. NCBI nr
Match: TYK11822.1 (ABC transporter I family member 6 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 9.70e-47
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVA+AVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVARAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HIMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. NCBI nr
Match: XP_038880111.1 (ABC transporter I family member 6, chloroplastic [Benincasa hispida])

HSP 1 Score: 162 bits (411), Expect = 9.70e-47
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAIST 107
           HVMEDGKIVKTGDISIAKLLEEEGYKAIST
Sbjct: 299 HVMEDGKIVKTGDISIAKLLEEEGYKAIST 328

[Close]

BLAST of Cucsat.G18630 vs. NCBI nr
Match: XP_008453599.1 (PREDICTED: ABC transporter I family member 6, chloroplastic [Cucumis melo])

HSP 1 Score: 162 bits (411), Expect = 9.70e-47
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVA+AVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVARAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HIMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. NCBI nr
Match: KAA0058269.1 (ABC transporter I family member 6 [Cucumis melo var. makuwa])

HSP 1 Score: 162 bits (411), Expect = 9.70e-47
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVA+AVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVARAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HIMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. ExPASy TrEMBL
Match: A0A0A0LXA8 (ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423200 PE=4 SV=1)

HSP 1 Score: 166 bits (419), Expect = 2.96e-48
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           HVMEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. ExPASy TrEMBL
Match: A0A5A7UXL8 (ABC transporter I family member 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G005950 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 4.70e-47
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVA+AVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVARAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HIMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. ExPASy TrEMBL
Match: A0A5D3CKJ6 (ABC transporter I family member 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00350 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 4.70e-47
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVA+AVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVARAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HIMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. ExPASy TrEMBL
Match: A0A1S3BXF5 (ABC transporter I family member 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494260 PE=4 SV=1)

HSP 1 Score: 162 bits (411), Expect = 4.70e-47
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVA+AVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 239 LQLAVLGAEMAILDEIDSGLDVDALRDVARAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 298

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLEEEGYKAISTS
Sbjct: 299 HIMEDGKIVKTGDISIAKLLEEEGYKAISTS 329

[Close]

BLAST of Cucsat.G18630 vs. ExPASy TrEMBL
Match: A0A6J1E0S1 (ABC transporter I family member 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111025352 PE=4 SV=1)

HSP 1 Score: 161 bits (408), Expect = 1.42e-46
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 18  MSLQVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIKPSRI 77
           + L VLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFI+PSRI
Sbjct: 242 LQLAVLGAEMAILDEIDSGLDVDALRDVAKAVNGLLTPNNSVLMITHYLRLLEFIEPSRI 301

Query: 78  HVMEDGKIVKTGDISIAKLLEEEGYKAISTS 108
           H+MEDGKIVKTGDISIAKLLE EGYKAISTS
Sbjct: 302 HIMEDGKIVKTGDISIAKLLEAEGYKAISTS 332

The following BLAST results are available for this feature:

BLAST of Cucsat.G18630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAF5	3.6e-33	79.78	ABC transporter I family member 6, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P51241	1.3e-19	48.35	Probable ATP-dependent transporter ycf16 OS=Porphyra purpurea OX=2787 GN=ycf16 P...	[more]
O78474	3.0e-19	50.59	Probable ATP-dependent transporter ycf16 OS=Guillardia theta OX=55529 GN=ycf16 P...	[more]
Q00830	3.9e-19	46.51	Probable ATP-dependent transporter ycf16 OS=Trieres chinensis OX=1514140 GN=ycf1...	[more]
Q02856	8.7e-19	51.76	Probable ATP-dependent transporter ycf16 OS=Antithamnion sp. OX=2767 GN=ycf16 PE...	[more]

BLAST of Cucsat.G18630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146320.1	6.12e-48	96.70	ABC transporter I family member 6, chloroplastic [Cucumis sativus] >KGN65462.1 h...	[more]
TYK11822.1	9.70e-47	93.41	ABC transporter I family member 6 [Cucumis melo var. makuwa]	[more]
XP_038880111.1	9.70e-47	95.56	ABC transporter I family member 6, chloroplastic [Benincasa hispida]	[more]
XP_008453599.1	9.70e-47	93.41	PREDICTED: ABC transporter I family member 6, chloroplastic [Cucumis melo]	[more]
KAA0058269.1	9.70e-47	93.41	ABC transporter I family member 6 [Cucumis melo var. makuwa]	[more]

BLAST of Cucsat.G18630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXA8	2.96e-48	96.70	ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G42...	[more]
A0A5A7UXL8	4.70e-47	93.41	ABC transporter I family member 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CKJ6	4.70e-47	93.41	ABC transporter I family member 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BXF5	4.70e-47	93.41	ABC transporter I family member 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1E0S1	1.42e-46	93.41	ABC transporter I family member 6, chloroplastic OS=Momordica charantia OX=3673 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 81..204 e-value: 2.4E-23 score: 84.9
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 81..188
IPR003439	ABC transporter-like, ATP-binding domain	PFAM	PF00005	ABC_tran	coord: 99..177 e-value: 8.6E-12 score: 45.7
IPR010230	FeS cluster assembly SUF system, ATPase SufC	PANTHER	PTHR43204	ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC	coord: 70..190
None	No IPR available	PANTHER	PTHR43204:SF1	ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC	coord: 70..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18630.T1	Cucsat.G18630.T1	mRNA
Cucsat.G18630.T2	Cucsat.G18630.T2	mRNA
Cucsat.G18630.T5	Cucsat.G18630.T5	mRNA
Cucsat.G18630.T3	Cucsat.G18630.T3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0042626	ATPase-coupled transmembrane transporter activity
molecular_function	GO:0005524	ATP binding