Cucsat.G18287 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18287
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Protein TIC 20
Location	ctg3345: 4722719 .. 4726103 (-)
RNA-Seq Expression	Cucsat.G18287
Synteny	Cucsat.G18287

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTAAAAAGAAAGAAAAACAAAATGAGTTTAAGAAATTATGAAGCATTGCTCCCCTTTTCCTTTCGACTATTTCTTGAAAGATCGAGAAAACCTTTTGATTTAGAAATTTTTGGATATTAATGGATAGTTACGGCCAAATTGATGAGACAAAGTCTTAGAAGTCGTATTTAGGTAAAAAAATCCAAACAAAACCCTATCCCAACTTTGATTCCTGGCACAGCTGCCCACAAGCAACACCGCCCCATTTCAGCAGAGTGATTTCTAACCTGAGTCGACAATTCGGTAGCAACCCACCACCCGTATGGTCTCAAATCGGATTCCCCATATCCTGTAGAAGTCAGGTTTGTGAGTTCGAACCTATTCGATTCAATTTCAGGCAGAAGCTACATTTTTTGGATTAGTGGGTAGTCTCTGTTCATGATTACTTTACTCTATTGAACTTGATTCTAAGCATTGGGACTCTTTTGTATATAGGTTCCAGTTGCGCGATTCAAGTTTCAGGTTGACATTGGGTAAGAGATAGATTCATTTCAGTTAAGGTTTCAAATTGAATTTTAGGAATCTTGTTTAGAATAACTTAGCGCAGCGCTTTAGAATGTGTAGTAAGTAGTTCTTGTGAAGTCTGCTTGTCATGTTTTTATTTTTGTTTATATATAGAATTTGATTTTTATACTACTAAAACTGTTACGTATTCTGGTTTGTTATAAATACGTCATGATGTTGTGTTTTGCGATTCTTTTGCAACTATATGTTAGTATGGTGTTTATGTTGAAAACTTTTTCTTGCTGTTTTGGAGCTGAATTGTGGCCTGGAAAGTATGTGTAGAATGTGCACTGTGCACACATGGGACATTGTGAGATTGACTAGTGAGGAAGGGGTTAGAGGACCTTGAATATGTGATAAAGGAAAGTGGGGATAGTATCTGGGGCTTGGGTATAAGTTGCCAATGGTTGGTTTTGTGTTGACAAAAGTAAATGAATGCCATTGGTGTGTCATTATTGGATGTCAAGGCCCTAGGTATAGATGGTCAAGAGTCGACATGTCAATATTGGATAAGAGGAGTATTAAGACCTTGGCCATTGTCAAGAGTCAGTGTGATGTGGCTTTGGATAAGCATCGGGGTCTTGGATAGAGATTGTCAAGAGTTGAATTTTGAGTTCTGTAGAGAAGTATTGAGGTTTGGGTATGAATGGTCAGGAGCCAATGTGCCACGAAGGAGTATGTCTCGAAGATGTGTAAACGATGGAGTAAAGTTGGAAAGAGCTAGAGAGAGACATTTGAGAATTTAGCGATATGTGAGAGCTTGTTAGAGCTTGAGTTAGAGGATGTGCATGATATAGAAATGATTCTGCATGATATTATTAGGAAAATATTTAGGTCTTGCCTGGGTTGCACCTATCTCTATGCAGCCCAGGCAGCTGTCCAATAAAGCTTTGCCAATCTTTTTTAAAATGATTTTTAGTACTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGAGTATGCCATAGATATTACTTGTTTTCAGGTTTGCTGTGACTTGTGAGAACCATGAATACATGATTTTGTGATATATGTTGTATGTGATTGAAAATTTGAGGGGAAAATTGATATGACTTGCCAAATAAAATAAATATTTTTTGCATTATAAATAGACCATATGAATAATCCATTGGTGGAAGTACGTAAAAGTTCTTGCTCAATAATGAGTGAAGTATGACCACTTTCAAGATTGTTCAAGAAAGTAGATCCATTTGTTAGATAAGAGAGTTATCTAAATGAGAATGGTCCTTTAGAATTGGGGACAAAAACTTTTCTACCCAGAACAATCCCCAATACCTCATTAAAGCCAATGTATTCAATATTAGCGTTGTGTTTTTATGGATAAATTATATAGAAAAGAAATCATTAGAATATTTAAAATTTTAAAAATAGGCATTCCATTCTTTGTTTTTCATTGACTTCGTTTCTTACACTCTGCAATCTGCAATGATGTGGCTTTAAACAGGAAACTTAGATATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAGATTCCAAGTTATCTATTCCTAGCCGGTCTTCCATCTTACGTAATCCTCGTTGCAGTACACAAACTGCTAGCATTAGGAGTTCATGGGAACCTCATTTAAAGCATCAGACATGTTACTATGGAGGTGCATACAAAACCTTCCATAATCTTTATCTATCTTTTATTTGATCTTTATATTGAAACAATTATTACTGCGGTTTTGGAGATATCTCACTCGTAGTTTAATATAATCCTAGCTTCATATAAAGAAAGAATTATTACTGCAGTGGCAACATTAACATAAAGAAAATCTTGACTGACGTTTGTATCACTGTCATCTTAAAGAATTATATCTTCCTTTTCAGTAATTGATTCAAAGAAAGAATGGTGTGCTTCATTCTGTAATCCATTATTTTTCAAATGTAGGTCTCTTACCCTTAAAGCTACGTGCTGCATCTTCCCCTTTCTTAAGCGGGGATCTAGGTGGGTTGCTACATACGATCCCAAGGTTACCAGGGAAAAAAGTTATTAGCATGTCACCACGGGCAGCTAAAGATATCCCTACAAGTTATCGTTTCCCTCCAATGACCACAAAACCAAAATGGTGGTGGAGGACATTGGCATCCGTACCGTATCTAATGCCGTTTCACGAAACTTGGATGTATTCTGAAACAGCATACCACCTACACCCGTTCCTGGAGAACTTTGAATTCCTCACATACCCCTTTCTTGGAGCCCTTGGGAGACTACCAAGTTGGTTCTTAATGGCATATTTTTTTATTGCCTATCTAGGAATTGTAAGACGAAAGGAATGGCCTCACTTCTTTAGGTTTCACGTTGTTATGGGCATGTTGATGGAGATTGCCCTGCAAGTGATTGGTACAGTAAGTCGTTGGGTGCCCCTTTCCATATACTGGGGAAAAATTGGGATGCACTTTTGGACAGCTGTATCATTCGGTTTCATGTTCACGGTTGTTGAATGCGCACGCTGTGCTCTTGCAGGCATGTATGCGGAAGTCCCCTTTGCCTGTGAAGCAGCCTACATCCAAATACCATTTGATTAAGAACTCTTTGGTTTTGTAGTTGTGTGTGAGTAGAATGTGATGTAGACATGTAGTTTTGCTACTGCACTTTCGGAAATGAACATCGAACATTCTGAGCTCTATCGAAAATTTCTTAAGTTAGTTTTAAACATGTATCTTTGTCTTTGTAGAAACTGAGGATTTTGTATGGAAGAAGTGATTATGGGCGACGTAAAGGACACACGTCCTTACGAGTGACTAAAGCTTTATTATCATTTGTATTTTGTCAACTTTGTTAAGAAAATGAATTTGAACTACTAATGTTTGTGATTGGTTTTTGCTACGCCAAACTTCTTTTTTACTTGTGTTTTATGGAGTAAGGAAGTAGTATTGAGGGAATCTGGAACGGAATGCCATAATGATTTAGTATTAAGTATTAAGTATTTTCTGTCAAGCTACTTTGGCTCTAGAGTTAATTAATTGTGAAAGTTGAGCCACCAACTGGTTGGATAGATGGTTTTAGTTTGGCATCGTAAATCAGCTTGGGATA

Coding sequence (CDS)

ATGATTCTCAATGGATGCACCACACCCACTGGGTGCTTCTTCTCAGATTCCAAGTTATCTATTCCTAGCCGGTCTTCCATCTTACGTAATCCTCGTTGCAGTACACAAACTGCTAGCATTAGGAGTTCATGGGAACCTCATTTAAAGCATCAGACATGTTACTATGGAGGTCTCTTACCCTTAAAGCTACGTGCTGCATCTTCCCCTTTCTTAAGCGGGGATCTAGGTGGGTTGCTACATACGATCCCAAGGTTACCAGGGAAAAAAGTTATTAGCATGTCACCACGGGCAGCTAAAGATATCCCTACAAGTTATCGTTTCCCTCCAATGACCACAAAACCAAAATGGTGGTGGAGGACATTGGCATCCGTACCGTATCTAATGCCGTTTCACGAAACTTGGATGTATTCTGAAACAGCATACCACCTACACCCGTTCCTGGAGAACTTTGAATTCCTCACATACCCCTTTCTTGGAGCCCTTGGGAGACTACCAAGTTGGTTCTTAATGGCATATTTTTTTATTGCCTATCTAGGAATTGTAAGACGAAAGGAATGGCCTCACTTCTTTAGGTTTCACGTTGTTATGGGCATGTTGATGGAGATTGCCCTGCAAGTGATTGGTACAGTAAGTCGTTGGGTGCCCCTTTCCATATACTGGGGAAAAATTGGGATGCACTTTTGGACAGCTGTATCATTCGGTTTCATGTTCACGGTTGTTGAATGCGCACGCTGTGCTCTTGCAGGCATGTATGCGGAAGTCCCCTTTGCCTGTGAAGCAGCCTACATCCAAATACCATTTGATTAA

Protein sequence

MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLPLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVVECARCALAGMYAEVPFACEAAYIQIPFD

Homology

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BLAST of Cucsat.G18287 vs. ExPASy Swiss-Prot
Match: Q8GZ79 (Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 1.1e-94
Identity = 155/206 (75.24%), Postives = 185/206 (89.81%), Query Frame = 0


Query: 63  LRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRTLA 122
           L A+SS  L+G+ G L  T+P LP ++   ++PRA+KD+P+S+RFPPMT KP+WWWRTLA
Sbjct: 69  LSASSSLLLNGEQGSLSGTLPVLPVRRKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLA 128

Query: 123 SVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGIVR 182
            +PYLMP HETWMY+ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFLMAYFF+AYLGIVR
Sbjct: 129 CLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLMAYFFVAYLGIVR 188

Query: 183 RKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVVEC 242
           RKEWPHFFRFHVVMGML+EIALQVIGTVS+W+PL +YWGK GMHFWTAV+F ++FTV+E 
Sbjct: 189 RKEWPHFFRFHVVMGMLLEIALQVIGTVSKWMPLGVYWGKFGMHFWTAVAFAYLFTVLES 248

Query: 243 ARCALAGMYAEVPFACEAAYIQIPFD 269
            RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 249 IRCALAGMYADIPFVCDAAYIQIPYD 274

[Close]

BLAST of Cucsat.G18287 vs. ExPASy Swiss-Prot
Match: Q9ZST8 (Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.4e-78
Identity = 149/268 (55.60%), Postives = 183/268 (68.28%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MI NG T   G     +   IP++ ++          +SIRS W   L+++     G+  
Sbjct: 1   MIQNGGTVSQGSVLCYA-CQIPAKVAV----------SSIRSFWGHSLENKP---RGMTF 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
             + A SS  LSG    L  TIP LP     S +PRA KD  + +RFPPMT KP+WWWRT
Sbjct: 61  TDMSATSSLLLSGGQNFLSRTIPVLPTLHKSSTTPRATKD-SSGFRFPPMTKKPRWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           L+ +PYL+PFH+ WMY+ TAYHLHPF+  F+ +TYPFL A+G LP W L+AYF IAYL I
Sbjct: 121 LSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFLMAIGTLPRWSLIAYFLIAYLTI 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHFFRFHV +GML+EIALQV G VSRW+P S YWGK+GMHFWT   F F+FT +
Sbjct: 181 VRRKEWPHFFRFHVAVGMLIEIALQVTGIVSRWMPRSFYWGKLGMHFWTTAFFVFLFTTI 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 269
           EC RCAL GMYA+VPF C+AAYIQIP +
Sbjct: 241 ECIRCALVGMYADVPFVCDAAYIQIPHE 253

[Close]

BLAST of Cucsat.G18287 vs. ExPASy Swiss-Prot
Match: Q9ZQZ9 (Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.8e-36
Identity = 75/176 (42.61%), Postives = 113/176 (64.20%), Query Frame = 0


Query: 96  RAAKDIPTSYRFPPMTTKPKWWWRTLASVPYLMPFHETWMYSETAYHLHPFLENFEF--- 155
           R AKD     + P +  +P+WWWRTLA VPYL+    +   S+  +++ PFLE  +    
Sbjct: 104 RVAKDDFFKIKLPKIAERPEWWWRTLACVPYLI----SLQISDVGFYVQPFLEKHDAIGD 163

Query: 156 LTYPFLGALGRLPSWFLMAYFFIAYLGIVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSR 215
           + Y   GA+ R P+WF M Y ++ Y+ +V+ KE PH+ RFH++MGML+E ALQVI   S 
Sbjct: 164 MIYFIPGAINRWPTWFFMVYCYLGYMWVVKNKELPHYLRFHMMMGMLLETALQVIWCTSN 223

Query: 216 WVPLSIYWGKIGMHFWTAVSFGFMFTVVECARCALAGMYAEVPFACEAAYIQIPFD 269
           + PL  + G+ GM++W A+ F ++  ++EC RCALAG+YA++PF  +AA I   F+
Sbjct: 224 FFPLIHFKGRFGMYYWMAIGFTYICLLLECIRCALAGVYAQIPFMTDAASIHTLFN 275

[Close]

BLAST of Cucsat.G18287 vs. NCBI nr
Match: XP_004140499.1 (protein TIC 20-I, chloroplastic [Cucumis sativus] >XP_004140501.1 protein TIC 20-I, chloroplastic [Cucumis sativus] >XP_031743284.1 protein TIC 20-I, chloroplastic [Cucumis sativus])

HSP 1 Score: 563 bits (1451), Expect = 7.78e-203
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           ECARCALAGMYAEVPFACEAAYIQIPFD
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Cucsat.G18287 vs. NCBI nr
Match: KAE8646790.1 (hypothetical protein Csa_005677 [Cucumis sativus])

HSP 1 Score: 563 bits (1451), Expect = 1.79e-201
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 86  MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 145

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT
Sbjct: 146 LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 205

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI
Sbjct: 206 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 265

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV
Sbjct: 266 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 325

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           ECARCALAGMYAEVPFACEAAYIQIPFD
Sbjct: 326 ECARCALAGMYAEVPFACEAAYIQIPFD 353

[Close]

BLAST of Cucsat.G18287 vs. NCBI nr
Match: XP_008459737.1 (PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo] >KAA0039751.1 protein TIC 20-I [Cucumis melo var. makuwa] >TYK24746.1 protein TIC 20-I [Cucumis melo var. makuwa])

HSP 1 Score: 514 bits (1324), Expect = 1.80e-183
Identity = 235/268 (87.69%), Postives = 255/268 (95.15%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFS+SKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKL AASSP LSGDLGGLL TIPRLPGKK ISM+PRA+KD+PTSYR+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LA +PYLMP HETWMY ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFL+AYFF+AYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHF RFHVVMGMLMEI+LQVIGT+SRW+P+S+YWGK+GMHFWTAV F +MFTV+
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           EC RCALAGMYA+VPF C AAYIQIPFD
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Cucsat.G18287 vs. NCBI nr
Match: XP_038875339.1 (protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875341.1 protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875342.1 protein TIC 20-I, chloroplastic [Benincasa hispida])

HSP 1 Score: 483 bits (1244), Expect = 2.91e-171
Identity = 222/269 (82.53%), Postives = 248/269 (92.19%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFS+SKLSIP RS+I R+P CS QTASIRSSWEP L+HQTCYY GLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPGRSAISRSPHCSMQTASIRSSWEPRLEHQTCYYRGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMS-PRAAKDIPTSYRFPPMTTKPKWWWR 120
           LKLRAASSP LSGDLGGLLH IPRLP +K I M+ P+AAKD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  LKLRAASSPLLSGDLGGLLHMIPRLPRQKKIGMTTPQAAKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLG 180
           TLA +PYLMP HETWMY+ETAYHLHPFLE FE  TYPFLGA+GRLPSWFLMAYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEEFELFTYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTV 240
           +VRRKEWPHFFRFHVVMGML+EIALQVIGTVSRW+PL++YWGK+GMHFWTAV+F ++FTV
Sbjct: 181 VVRRKEWPHFFRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKLGMHFWTAVAFAYLFTV 240

Query: 241 VECARCALAGMYAEVPFACEAAYIQIPFD 268
           +E  RCALAGMYA+VPF C+AAYIQIP+D
Sbjct: 241 LESIRCALAGMYADVPFVCDAAYIQIPYD 269

[Close]

BLAST of Cucsat.G18287 vs. NCBI nr
Match: XP_022151562.1 (protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 472 bits (1214), Expect = 1.05e-166
Identity = 215/268 (80.22%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTG  FS+S+  IPSRS+  R P CS QTA IRSSWEP L+HQTC+  GLLP
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKLRAASSP LSGDLGGLLHTIPRLP +K I M+P+A+KD+PTS+RFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LA +PYLMP HETWMY+ETAYHLHPFLE+FEF TYPFLGA+GRLPSWFLMAYFF+AYLG+
Sbjct: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHF RFHVVMGML+EIALQVIGTVSRW+PL++YWGK GMHFWTAVSF ++FTV+
Sbjct: 181 VRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTVL 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           EC RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 ECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Cucsat.G18287 vs. ExPASy TrEMBL
Match: A0A0A0KFP3 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_6G108490 PE=3 SV=1)

HSP 1 Score: 563 bits (1451), Expect = 3.77e-203
Identity = 268/268 (100.00%), Postives = 268/268 (100.00%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI
Sbjct: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV
Sbjct: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           ECARCALAGMYAEVPFACEAAYIQIPFD
Sbjct: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268

[Close]

BLAST of Cucsat.G18287 vs. ExPASy TrEMBL
Match: A0A5A7TDM5 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G003090 PE=3 SV=1)

HSP 1 Score: 514 bits (1324), Expect = 8.70e-184
Identity = 235/268 (87.69%), Postives = 255/268 (95.15%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFS+SKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKL AASSP LSGDLGGLL TIPRLPGKK ISM+PRA+KD+PTSYR+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LA +PYLMP HETWMY ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFL+AYFF+AYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHF RFHVVMGMLMEI+LQVIGT+SRW+P+S+YWGK+GMHFWTAV F +MFTV+
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           EC RCALAGMYA+VPF C AAYIQIPFD
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Cucsat.G18287 vs. ExPASy TrEMBL
Match: A0A1S3CAY7 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103498780 PE=3 SV=1)

HSP 1 Score: 514 bits (1324), Expect = 8.70e-184
Identity = 235/268 (87.69%), Postives = 255/268 (95.15%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTGCFFS+SKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP
Sbjct: 1   MILNGCTTPTGCFFSNSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKL AASSP LSGDLGGLL TIPRLPGKK ISM+PRA+KD+PTSYR+PPMTTKPKWWWRT
Sbjct: 61  LKLNAASSPLLSGDLGGLLSTIPRLPGKKNISMTPRASKDVPTSYRYPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LA +PYLMP HETWMY ETAYHLHPFLE+FEFLTYPFLGA+GRLPSWFL+AYFF+AYLG+
Sbjct: 121 LACLPYLMPLHETWMYGETAYHLHPFLEDFEFLTYPFLGAIGRLPSWFLIAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHF RFHVVMGMLMEI+LQVIGT+SRW+P+S+YWGK+GMHFWTAV F +MFTV+
Sbjct: 181 VRRKEWPHFLRFHVVMGMLMEISLQVIGTMSRWLPISVYWGKLGMHFWTAVCFAYMFTVL 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           EC RCALAGMYA+VPF C AAYIQIPFD
Sbjct: 241 ECMRCALAGMYADVPFVCNAAYIQIPFD 268

[Close]

BLAST of Cucsat.G18287 vs. ExPASy TrEMBL
Match: A0A6J1DDV0 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 472 bits (1214), Expect = 5.07e-167
Identity = 215/268 (80.22%), Postives = 243/268 (90.67%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYGGLLP 60
           MILNGCTTPTG  FS+S+  IPSRS+  R P CS QTA IRSSWEP L+HQTC+  GLLP
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKGLLP 60

Query: 61  LKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWRT 120
           LKLRAASSP LSGDLGGLLHTIPRLP +K I M+P+A+KD+PTS+RFPPMTTKPKWWWRT
Sbjct: 61  LKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWRT 120

Query: 121 LASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLGI 180
           LA +PYLMP HETWMY+ETAYHLHPFLE+FEF TYPFLGA+GRLPSWFLMAYFF+AYLG+
Sbjct: 121 LACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLGV 180

Query: 181 VRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTVV 240
           VRRKEWPHF RFHVVMGML+EIALQVIGTVSRW+PL++YWGK GMHFWTAVSF ++FTV+
Sbjct: 181 VRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTVL 240

Query: 241 ECARCALAGMYAEVPFACEAAYIQIPFD 268
           EC RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 ECIRCALAGMYADIPFICDAAYIQIPYD 268

[Close]

BLAST of Cucsat.G18287 vs. ExPASy TrEMBL
Match: A0A6J1DBI9 (Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1)

HSP 1 Score: 467 bits (1202), Expect = 3.54e-165
Identity = 215/269 (79.93%), Postives = 243/269 (90.33%), Query Frame = 0


Query: 1   MILNGCTTPTGCFFSDSKLSIPSRSSILRNPRCSTQTASIRSSWEPHLKHQTCYYG-GLL 60
           MILNGCTTPTG  FS+S+  IPSRS+  R P CS QTA IRSSWEP L+HQTC+   GLL
Sbjct: 1   MILNGCTTPTGWCFSNSRFCIPSRSTASRTPGCSMQTARIRSSWEPRLEHQTCFSKVGLL 60

Query: 61  PLKLRAASSPFLSGDLGGLLHTIPRLPGKKVISMSPRAAKDIPTSYRFPPMTTKPKWWWR 120
           PLKLRAASSP LSGDLGGLLHTIPRLP +K I M+P+A+KD+PTS+RFPPMTTKPKWWWR
Sbjct: 61  PLKLRAASSPLLSGDLGGLLHTIPRLPRQKRIGMTPQASKDVPTSFRFPPMTTKPKWWWR 120

Query: 121 TLASVPYLMPFHETWMYSETAYHLHPFLENFEFLTYPFLGALGRLPSWFLMAYFFIAYLG 180
           TLA +PYLMP HETWMY+ETAYHLHPFLE+FEF TYPFLGA+GRLPSWFLMAYFF+AYLG
Sbjct: 121 TLACLPYLMPLHETWMYAETAYHLHPFLEDFEFATYPFLGAIGRLPSWFLMAYFFVAYLG 180

Query: 181 IVRRKEWPHFFRFHVVMGMLMEIALQVIGTVSRWVPLSIYWGKIGMHFWTAVSFGFMFTV 240
           +VRRKEWPHF RFHVVMGML+EIALQVIGTVSRW+PL++YWGK GMHFWTAVSF ++FTV
Sbjct: 181 VVRRKEWPHFLRFHVVMGMLLEIALQVIGTVSRWMPLAVYWGKFGMHFWTAVSFAYLFTV 240

Query: 241 VECARCALAGMYAEVPFACEAAYIQIPFD 268
           +EC RCALAGMYA++PF C+AAYIQIP+D
Sbjct: 241 LECIRCALAGMYADIPFICDAAYIQIPYD 269

The following BLAST results are available for this feature:

BLAST of Cucsat.G18287 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GZ79	1.1e-94	75.24	Protein TIC 20-I, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-I PE=1 ...	[more]
Q9ZST8	2.4e-78	55.60	Protein TIC 20, chloroplastic OS=Pisum sativum OX=3888 GN=TIC20 PE=1 SV=1	[more]
Q9ZQZ9	1.8e-36	42.61	Protein TIC 20-IV, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-IV PE=...	[more]

BLAST of Cucsat.G18287 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140499.1	7.78e-203	100.00	protein TIC 20-I, chloroplastic [Cucumis sativus] >XP_004140501.1 protein TIC 20...	[more]
KAE8646790.1	1.79e-201	100.00	hypothetical protein Csa_005677 [Cucumis sativus]	[more]
XP_008459737.1	1.80e-183	87.69	PREDICTED: protein TIC 20-I, chloroplastic-like [Cucumis melo] >KAA0039751.1 pro...	[more]
XP_038875339.1	2.91e-171	82.53	protein TIC 20-I, chloroplastic [Benincasa hispida] >XP_038875340.1 protein TIC ...	[more]
XP_022151562.1	1.05e-166	80.22	protein TIC 20-I, chloroplastic isoform X2 [Momordica charantia]	[more]

BLAST of Cucsat.G18287 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFP3	3.77e-203	100.00	Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_6G108490 PE=3 SV=1	[more]
A0A5A7TDM5	8.70e-184	87.69	Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00309...	[more]
A0A1S3CAY7	8.70e-184	87.69	Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103498780 PE=3 SV=1	[more]
A0A6J1DDV0	5.07e-167	80.22	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]
A0A6J1DBI9	3.54e-165	79.93	Protein TIC 20 OS=Momordica charantia OX=3673 GN=LOC111019474 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005691	Chloroplast protein import component Tic20	TIGRFAM	TIGR00994	TIGR00994	coord: 1..268 e-value: 1.5E-114 score: 380.3
IPR005691	Chloroplast protein import component Tic20	PFAM	PF16166	TIC20	coord: 94..261 e-value: 1.6E-66 score: 223.6
IPR005691	Chloroplast protein import component Tic20	PANTHER	PTHR33510	PROTEIN TIC 20-II, CHLOROPLASTIC	coord: 1..268
None	No IPR available	PANTHER	PTHR33510:SF9	HIT-TYPE ZINC FINGER FAMILY PROTEIN-RELATED	coord: 1..268

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18287.T2	Cucsat.G18287.T2	mRNA
Cucsat.G18287.T1	Cucsat.G18287.T1	mRNA
Cucsat.G18287.T3	Cucsat.G18287.T3	mRNA
Cucsat.G18287.T4	Cucsat.G18287.T4	mRNA
Cucsat.G18287.T6	Cucsat.G18287.T6	mRNA
Cucsat.G18287.T5	Cucsat.G18287.T5	mRNA
Cucsat.G18287.T7	Cucsat.G18287.T7	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane