Cucsat.G18284 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18284
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Golgi to ER traffic protein 4 homolog
Location	ctg3345: 4709791 .. 4711170 (-)
RNA-Seq Expression	Cucsat.G18284
Synteny	Cucsat.G18284

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATTTGTGAAAAAGGTCATCCATACAATTTTTCAAATAGTGAATTTTGAGAAATGCTCCTTTTTGTTTTGTTCATACCTTCATATTTTTCGATTACACTGCTCATTCGACGACGAACAGAAGAAGTCCCTGGTTTTGTTGCTCTCTGCCTAACGATCATAAACTAACGAATTCGTTCTCCTGGGATCGTTAGCCGATTCAAAATGAGTTCGCATCCATTGCAGAAGACCATGTCCCGTGCGAGATCTAGGCGAATTGTACTGCCTCCGGTTCAAGAGGTAATGAATGTTCGAAACATGATCTTTTTCTTACCTTTTGTTCATTATTTACGTTGGTTATGAACAAATTTGAGCCTTGAGTGGGAAATTATAGTGGTGGTAAGAATTTTAAGACTCAATTTCTACAGCGTATCATTTTGTTACTATGTTGGTTATGATTTGTTTTAATTGAAATGCAAAAATTACGTAGCTATTTTGTTTTCGCGATTTCTATCAATTTCTGACCCAAAGAGAAGAAAAAGTGATACGTGTTTGGATCAAAAGAATCGAATTTTCATTGATTATTTATTTTGAACTCTGTAATGTACGCCTGCCATTACTATTGTTATTTTTTTTTTCTTTATAAAGAATACGGAATTAAAGAATAGAGAAACCCCACTCTTTTAGTTGAGTTCTTGCTTTGTAGCTGGTTTTAACCTATCCCACATTAATCGTCAACTAATTGTTTTTTAGGCTAATGCATTTGTTCTTAGCTGAGTCGAGCAAATAGTTTAATCTGCAGTAGCATTAACTTCTTTGAAACTGTTATTACAGCATATTATTAAAATAGAAGACGTTATCGATACTGGTGACTACTATGGGGCTCAACAGATGTACAAATCTGTCAGTGCAAGGTACAGCAATAATACCTTGTTCGCTTGGTTTTGATTGTAAAAGAAATATTTCCAAATTATTATGCAAAATGGACTCAGAGAACGTGAGTCTGATTTGTAGATACTTATTAATGAGTAGTAGATGTGCAATTCTCTCAATACCTTTGCTGCACTTCTATTTAAACTGGTTACAACCTTAATTGGCAATTTTTATCAATCACAATTACCATTAGACTTATGCCTTTTCAATTACTTTTAAAACCACTGTCTTCACTCAAATGATTATGCAAAAATGGAGGTCTGGTCAATCAAATTGCACGTTCATGAACATGTGTTGTTTCATTACAGATACGTGGCTGCAGAAAGGTACTCAGAAGCCTTGGATATTCTTCAGTCAGGGGCTTGTACCCAGTTGAAACATGAGCAGGTCAAAGCTAGTTGCATCTTTTCTGCGTATGTAATTGCTGGATTGGATGTTCTTTTAGCATTTGCAGCATAGTGTGTCTGTGTCATCATTTTAAATTCTGAACGTGGATATCCTTTTAGCATTTGCAGCATAGTGTGTCATCCTTGTAACATTCTTAATGGCGCTATTGCTTAGGCCTTGAAATTTCAATTTCACTTTACATATTTGAAGTCCTTGACTCTAGAGAATGGGCAAAACATGGAAGTGTAGATCGTTCTATATTGTGTATGAATATTATTCATGAATAGAGACATGAGACACAACATAATAATAATGATATGGAATATCCATAACATAAGACATTGCGGACTTCAAGATAACATTGACAAATATATGCATTGATAAGCAACCGAGTTTCATTTATAATATGAAGTTGATTGGAAAAAAAACAAAGAAACAAAGGAGTTACAAAAAACGATAGACAACAGGGAGTAATTACAAAATGGAAATAAAAAAACCGAGGAAAAACTCAAGCCTTAAAGAGCTGAGAAACTAAGGCTTGAGAAAAAAGAAAAAAACTCAAGTGAGCATTTTTTTGGTTTTTTTCTCTCGGTCGGTTATGTGGCTTCCCCCTTCAGTGTTTTCTTCATCATGAAATGTTAGAGTACTTATGATGGGTAGATTCTTTGTCTAGGAGATCTTGCATTGGAGGATTAACACTTCCGAATGTATTCAAAGAGCTTTTTCCATGTTCTTGGGTCTGTTGTGGCGTGTTTTTACTTTCGTAGAGTTTTGACAGTGTGCTATGGAGTTTCTTTTATTTTGTATAACACTTGTCTCAAGAGAAATAGGAGGACTTTTAGGGGTTGAAGATGTCTAGGTGGAGGTGTGACTATGACTAGGTTCAACGGCTTTCTGTAATACTCCCTTGTCTACTATAGTCATTTTATCGACAATTGTAGCATCTTTCGTGATGGTTTCCTTTTCTTTTCCTCCTTGACTCCTTTTGTAATTGGCTGTTTTTTCTGTCTTTTTTTGCTTTGTATTTCGCTTCTTTTTTTTTCATTCTCTCTGTGAAAGTACAACTTCTAGGTTGTTTTTTAGAAGAGAGAGCCTCTGATTGGATTCATTTGGAATGAATATTTTCTCTGCTTTGTAATAAATCTAGATAGGGATGGTCTCATTGATCCTTTTTACTGGGTTCGGAGATTTATCTCCTCGGCCTTCAGATTTTATTTGTTCTGTTAATTCTGATGCTTTACAAAAGAAACATACAACATCCATTGTTCCATCCATTTGAAATGAACACAATTAACCAGAATAGTGTTGAGAATGGGGAAATGAAGTTCAGATTTTTTCATCAATCTAGCTGTAAAAGGTTGACAGTTTCTACTTTTCAGATTACTTGTGGATCAGAGCTTGCTGTGTTATTTGTCGAGACACTTGTTAAAGGCAAAGTTCCTTATGATGATAATACTCTTGGTGAGTTCCTTTGATTTGGTTTCCTGTGTTTCTTTTATAAGATTATGGGTAGATGTTGGGGATGTTATGTTATTGGGATATTACTTGTGGCATGATTGTAATTACACAGTAACTCCTCAACCCCTTAACCTAGGACGTTGGTTAGACTGGATGGTTAAATAGAGTGGATTAGTGGTTTGAAAGTTGGGCCAAATTTTGGCATGGCTCATAATGAGATGGGGAGAGAAATTGCCTTCTTGAAAGGAAGTTGTTATTGCAATTCCTTTGCATTGTTGTTTTCTCATGATCTGAAATTGAATAACGCTGATTTAGTGTTTGTTATTCGGTATTTTCATTTCAATTTGAGATTCAGTTTCTTTTTTGTAACTTTGTCATCTGTTCGTAATTGCTCTTTCCAAGACAAGTCCATTTGAGGATTAATTTGGTAACCGCAGTATGGAAAAAAAAAATATATCATTTCTTTACTACCTTTCGTTGTCTACTCTTATTTTTGAAGTTCTAATGTGATTATGACAAACATTATGTTAGATCGTGTCAGGAAAATTTACAAGAATTTCCCTCAGATTCCATTACCCCAACACTTGGGGGAAGATGATGATATGCAACAACTCTCTGAAGCACTTGGTGCTGCAAAAACACGGGTTGAAGGATGTTCCTCTTTTTTGAAAGCAGCTTTGAAGTGAGACATTCTCCATTCTCTTTCTAATATTAGTCATTTCTACATTGGGAGTGTGCATAACAAAAAAGGAAAACGAGTATTTTATTTTTAAGTGCAACTGTTTGAATTATGGCATACATTCATTTGTATCAAGTTAGGTTTGTGCTCTCTTTGAATCAGTTATATATAATTCCTTTGTACTGAAGGAGACTACTTGTTTTCTACAAATCTTTGAATATATCAGGTGGTCTATGGAGTTTGGATCGCAAAGGAGTGGATCTCCGGAAATTCATATCATGCTTGCTACATATATATATTCTGAGTCACCGGAAGTGGTATGTTCGGCCAAAGAATATACTTTAAGTACTTGTTTGAACTTGCTTTTTGTTTACAAGAATTTTTGTTTTTGGTGTTGGTGTGTATGATGACTTCATTTTAGTTGCAAATGACATGTCTACTGTTACTTCAGTTCCTTTGGAGATTGAATAAATTTTACGTCTGTGTCTAATGTTCATCATGTCTAGATTTCATGCGGTTGAGGTGTCTGAATTGTTAATAGAAAGAAGATATAGCATTCTTTTTATGAGTATGTAATTTAGCAATGACATGCTGTACTGCTGACTGCTGCTATGATATATTTCCTAACAAGGTCATGGGATGCATGTGCGTGACATTTTAACCATGAATTCAATATGATTGTTGAAGCATAGTCCAGTACCATGAATGATGGAACAGTTGTTGCTTGTCCACTTTGACTGGTTTAATAGTATCTTTCAGTATTTTACATGTTGCAGGACATGACCAGAGTATCATATCACTTTATTCGAGGAGATAACCCCAAGAAATTTGCTTCTATATTAGTGAATTTTATGGGCAAGGTATTAGAGCTTTCCTTTATCTCTCATTTTTCAAGGATCTGCAGTTTTCATTATGCCTTCATACTTATTGCCATGGTTGAAAGAAGGTTTAAGTCGTGCATTTTTCTAATTGATCCCAAAATTATTATGTTCCTTGAGCGTAACTATTTTGTTTCACATAATTTGTGGCCCTTGTACTTTTTGACAGTCATTCAGTTGAAGTACTTATATAGGTGTCTATATTTTTCTAAGATAATCTGATGTGATCTCTTATTTCCTAATGGAATGAAAAGATCTAATCACAATGTTAATAGAACTGTTGATCTCAATTTCATGGAGCAGTAAGTATTATTAAAATATCAATATTAATGGATGCTTTTTGAAAAAATCATCAAAAGTATTTTTTAACATGCTTAAACTAGAAATGTTAAGAACCGGCAGTTTCTACACAAGTTAAAACTATTTTTTTTCTGTGAATTTTTATGTTATTGTTAGTGATATTGTGGTAATATTACTCTATTGTTGATACTTTCTCAGTAGAATAAAAATATTGACATCAATCATTATTAGATATTTGAACCTTTCACCTTGATTGTAATTAACGAGAGTACATGCTTTCTAGGATTTCTTATTTTCATGAGTATGAAAAAAGATGAGAAAGAAACAACTATAATATAATTTCATTCGATAAATTTACAAACAAAAGCAGATTTCCCAAGTCCTTGGGATTACAAGAAAACTTTCCAATGGGATTCAAAGATAAAAGAATAAAATACTTAAAAACCAGTGATTTTTGCACCAGAACAGAGCCCAAGAAACTAATGAATCAAGATTATTTTTTATGTTTACCTTCATATCAAAAAGAACATTTATGTTGTTTATCCGCTCGTAAGATATTGCACGCATTCTGTTTAGCCAATCATATTGTTATGTGTTTTCTTATTCTGTTTCCATTAGTTAACTGAACTTGTGCTTTTTCCCAACCCCGCAGTGTTATCCAGGTGAAGATGATATGGCTATTGCACGGGCAGTTTTAATGTAAGACTTATAAATTTATTTATATACTTACCACCAATTAAAAATTCTCGAGTCAAGGGAATTTTCTTGAATAATGAGTTAATGATATGGATGGACAAATATTGACACATAGCAAATCTATTCAAAATGATGGAAAATTTGACTTATGAGTATAGTTGCAAATAGTTTTAGTGGGTTTACACCGAGCAATCAATTTTGAAGTGTAATGAGTCAATTTTAAAAGTCAAGCATTGGAGGTTTTGCAATTATGAAAATTTTAATTGTCAATTTTTTCTTTGAAATTTGAATGCGAGTAAACCTGCATTGTGGCCTTCCAAACCCTGTAATTGTCAGACTCACAGTTCATGCGTTTTACTTCCATTAATATGGGTGTATAGGGTGAAGAATTGATACTTATTACTCTTGAGGGATGGGTTTTCATTTCAACAATTTTTGAGCTCTGAGGGCTAGGTTGTTTTTTGTGTAGGTACTTGTCTCTTGGTAATCTAAGGGATGCTAATGTCCTATTTGATGAGTTAAAGAAAGTAGAAGAACGTGAAGAACTCGAGCTTCCTGATTCAGAACTGATTGAGTTTATCGTCTATCTTTTGCTAACGTAAGGTCCATTTGCTTTGTCACAAATAAACTAGGCAGCAATATATATACTCAGCAGATGTAGTGTGTGTGAAGTGTGAAGAATGATGGCAATAAAACCAGTTTAGTGAACAAAGATTAGCTCTGAAATGGTAAAAAAACCATCAAGCTGTGCATGATGTAAGGAGTCTTAGAATCCTGGTAAATATATAATTGTAACACTTTTTGTCAATATTGCCAAAGCTTTCATTGATGCTACAAATTAAGATTATTTCAAAAAATACTTAAAAGCCCCCTTTCTCTTGAAGGAAGCGGGAAGCAATGCCTTTTTTTCTTAAAACCTTTTAGGGAAAAGGTATTTCAATTGGAAAACAACTCTAAGAACTCCAAAAGACAAATTGTCTTGTTTGCAAGTTGAGTTTATAGTGTGATATCTTCTAATTCTGTTTTCAGTATTGCAGTACTGCAATTTTATGATTTGTAAGCAAAACTTTAAATATGCATTTGCAGGTTGCAAAGAGACGCGTTGCCTCTTTTTAATATGCTAAGGGCAAATTACAAGTCAAGTTTAGAGAGAGAACCTGTCCTGAATGAGGTGCAACTTCTGTTACTCTCCGAACTTTGATGAATCAACACCTTTTGAAATGTGCAATTATCTCTCATCTTGATTTTTTTAGATGAATTTTTGGAGAAACTTAGTTGAAGTTGCATAGTTGGATTCTAACTTCAGCATTTTTCTTCAGCTTCTCGATGAAATTGCAGAGAAGTTTTATGGAGTACGGCGTAGAAATCCCTTGCAAGGGATCTTTGGAGATTTCTTGAAGGTGATTTTCTCTCACAGTCTTTGTCCACTGGATGTTTGAATTAAGTTTAATTCATATTTTGATTTTTTTACTCGTATATGTTTATTTTGTTTTGGTTTCTAAACTTTCATACATTTCTTTTGCTACCAAACTTTGCAGAAAAAAAAACCCCCAAACATCAGTACATATTCAATTCATTTACTTGATAGTGACTACCTACATATTTGAATCCACTTATGATGTTAAGTTTTGTTAACGAAAATTAATTTCATCATTTGAAAAGTTTGGGAAGGTAAAACAAAATAGTGACAAGTGAAGAACTACAATAGAATTGAACTCTCAAGGGACAATGAAATTGAACCCTTAGGGGACATTTGGGATATTTAAGAAATTTAGTGTGTAAGTTAGTTTGTGTTTGTGGTACAAAGTTGTAAGATGGAGTTTTTCGATAAATGTGCAAAATAGAGAAAGAGGAAAAGATGAAGTTTCCCTTTAATTTTGTGAACTTCAACCATAAACACGGTTGAAGTTGAGTTGTTTAATACAACTTGTGAAGTTGGTGGGCAAGTGAAAATCTAACAATGTGAATATTTCTTGAGTTGTTTATTCAACTCATTGGTGGGCCAAATGTGCATAGCGTTTAGATATATCTAAAAATCTAGCCATGGGAATCTTCTTGAGTTGTCTGTGCAACTCTTGCTGACGGTTCATCTTTACTGTATCATTGAAAAGTTTTTTTTTTTTCCTTTCAAAAAAAAAAAAAAAGAATCTGACCATGGAACCATGCAGATGATGGGCTGATGATGTGCGGCAAGTAGAAAGGTCCGGTCAGCTTTCTGGTACTGTTGACTGGTACAGCTTCTCTGTGCTTTCGGGTTCTTTACAAAGATGGAATTAGATAAGCACATGTTGAACTTATTTCCAAAGATAGTAGGTCACGTTTCCCCTTTCTTGCATTCACTATTTGTTATTTGTTGATAAGTGACCTCTTCTCTTTTCAACATTGATGGATTATTTAACTCTGCATTATTTAGTTTTATCCTTTCAACTCCCTCTCTCTTTCCTCTCTTTATGTGGAATCAGGTAATTTATTACACTTCTAGAATTTGCACTTGTGTATGGTTTGATGTTTTTCTCCATTGTGGAAGTCATCAGATTAATTACAAAGAATCAAATATCATTTACTTAAGCCATGAGATTAACAACATTAAGACTTTATATTGTATCTTATATATC

Coding sequence (CDS)

ATGAGTTCGCATCCATTGCAGAAGACCATGTCCCGTGCGAGATCTAGGCGAATTGTACTGCCTCCGGTTCAAGAGCATATTATTAAAATAGAAGACGTTATCGATACTGGTGACTACTATGGGGCTCAACAGATGTACAAATCTGTCAGTGCAAGATACGTGGCTGCAGAAAGGTACTCAGAAGCCTTGGATATTCTTCAGTCAGGGGCTTGTACCCAGTTGAAACATGAGCAGATTACTTGTGGATCAGAGCTTGCTGTGTTATTTGTCGAGACACTTGTTAAAGGCAAAGTTCCTTATGATGATAATACTCTTGATCGTGTCAGGAAAATTTACAAGAATTTCCCTCAGATTCCATTACCCCAACACTTGGGGGAAGATGATGATATGCAACAACTCTCTGAAGCACTTGGTGCTGCAAAAACACGGGTTGAAGGATGTTCCTCTTTTTTGAAAGCAGCTTTGAAGTGGTCTATGGAGTTTGGATCGCAAAGGAGTGGATCTCCGGAAATTCATATCATGCTTGCTACATATATATATTCTGAGTCACCGGAAGTGGACATGACCAGAGTATCATATCACTTTATTCGAGGAGATAACCCCAAGAAATTTGCTTCTATATTAGTGAATTTTATGGGCAAGTGTTATCCAGGTGAAGATGATATGGCTATTGCACGGGCAGTTTTAATGTACTTGTCTCTTGGTAATCTAAGGGATGCTAATGTCCTATTTGATGAGTTAAAGAAAGTAGAAGAACGTGAAGAACTCGAGCTTCCTGATTCAGAACTGATTGAGTTTATCGTCTATCTTTTGCTAACGTTGCAAAGAGACGCGTTGCCTCTTTTTAATATGCTAAGGGCAAATTACAAGTCAAGTTTAGAGAGAGAACCTGTCCTGAATGAGCTTCTCGATGAAATTGCAGAGAAGTTTTATGGAGTACGGCGTAGAAATCCCTTGCAAGGGATCTTTGGAGATTTCTTGAAGATGATGGGCTGA

Protein sequence

MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQITCGSELAVLFVETLVKGKVPYDDNTLDRVRKIYKNFPQIPLPQHLGEDDDMQQLSEALGAAKTRVEGCSSFLKAALKWSMEFGSQRSGSPEIHIMLATYIYSESPEVDMTRVSYHFIRGDNPKKFASILVNFMGKCYPGEDDMAIARAVLMYLSLGNLRDANVLFDELKKVEEREELELPDSELIEFIVYLLLTLQRDALPLFNMLRANYKSSLEREPVLNELLDEIAEKFYGVRRRNPLQGIFGDFLKMMG

Homology

[Close]

BLAST of Cucsat.G18284 vs. ExPASy Swiss-Prot
Match: Q6GKV1 (Protein GET4 OS=Arabidopsis thaliana OX=3702 GN=MDC12.19 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 1.2e-17
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 10 MSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYSEALDILQSG 69
          MSR R +R  LPPVQEHI K+  VI+ G+YYGA QMYKS+SARYV A+R+SEALDIL SG
Sbjct: 1  MSRERIKR-ELPPVQEHIDKLRKVIEEGNYYGALQMYKSISARYVTAQRFSEALDILFSG 60

Query: 70 ACTQLKH 77
          AC +L+H
Sbjct: 61 ACIELEH 66

[Close]

BLAST of Cucsat.G18284 vs. ExPASy Swiss-Prot
Match: Q5ZKG8 (Golgi to ER traffic protein 4 homolog OS=Gallus gallus OX=9031 GN=GET4 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.5e-04
Identity = 22/66 (33.33%), Postives = 38/66 (57.58%), Query Frame = 0


Query: 29 KIEDVIDTGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAY 88
          K+   ++ GDYY A QMY+++  RY++  +Y EA +++ SGA     H Q  ++   S  
Sbjct: 29 KLRASVEKGDYYEAHQMYRTLFFRYMSQGKYVEARELMYSGALLFFSHNQQNSAADLSML 88

Query: 89 VIAGLD 95
          V+  L+
Sbjct: 89 VLESLE 94

[Close]

BLAST of Cucsat.G18284 vs. ExPASy Swiss-Prot
Match: Q0P5I8 (Golgi to ER traffic protein 4 homolog OS=Bos taurus OX=9913 GN=GET4 PE=2 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 1.9e-04
Identity = 22/66 (33.33%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 29 KIEDVIDTGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAY 88
          K+   ++ GDYY A QMY+++  RY+A  +++EA +++ SGA     H Q  ++   S  
Sbjct: 28 KLRASVEKGDYYEAHQMYRTLFFRYMAQSKHAEARELMCSGALLFFSHGQQNSAADLSML 87

Query: 89 VIAGLD 95
          V+  L+
Sbjct: 88 VLESLE 93

[Close]

BLAST of Cucsat.G18284 vs. ExPASy Swiss-Prot
Match: Q7L5D6 (Golgi to ER traffic protein 4 homolog OS=Homo sapiens OX=9606 GN=GET4 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04
Identity = 21/66 (31.82%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 29 KIEDVIDTGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAY 88
          K+   ++ GDYY A QMY+++  RY++  +++EA +++ SGA     H Q  ++   S  
Sbjct: 29 KLRASVEKGDYYEAHQMYRTLFFRYMSQSKHTEARELMYSGALLFFSHGQQNSAADLSML 88

Query: 89 VIAGLD 95
          V+  L+
Sbjct: 89 VLESLE 94

[Close]

BLAST of Cucsat.G18284 vs. ExPASy Swiss-Prot
Match: Q9D1H7 (Golgi to ER traffic protein 4 homolog OS=Mus musculus OX=10090 GN=Get4 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04
Identity = 21/66 (31.82%), Postives = 39/66 (59.09%), Query Frame = 0


Query: 29 KIEDVIDTGDYYGAQQMYKSVSARYVAAERYSEALDILQSGACTQLKHEQVKASCIFSAY 88
          K+   ++ GDYY A QMY+++  RY++  +++EA +++ SGA     H Q  ++   S  
Sbjct: 29 KLRASVEKGDYYEAHQMYRTLFFRYMSQSKHAEARELMYSGALLFFSHGQQNSAADLSML 88

Query: 89 VIAGLD 95
          V+  L+
Sbjct: 89 VLESLE 94

[Close]

BLAST of Cucsat.G18284 vs. NCBI nr
Match: KAG7013800.1 (hypothetical protein SDJN02_23967, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 189 bits (480), Expect = 3.73e-60
Identity = 96/101 (95.05%), Postives = 101/101 (100.00%), Query Frame = 0


Query: 1   MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
           MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDV+D+GDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1   MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61  EALDILQSGACTQLKHEQVKASCIFSAYVIAGLDVLLAFAA 101
           EALDILQSGACTQLKHEQVKASCIFSAYVIAGL+V+LAFAA
Sbjct: 61  EALDILQSGACTQLKHEQVKASCIFSAYVIAGLNVILAFAA 101

[Close]

BLAST of Cucsat.G18284 vs. NCBI nr
Match: XP_031743589.1 (Golgi to ER traffic protein 4 homolog isoform X3 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 2.31e-45
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQ+
Sbjct: 61 EALDILQSGACTQLKHEQI 79

[Close]

BLAST of Cucsat.G18284 vs. NCBI nr
Match: XP_023522834.1 (Golgi to ER traffic protein 4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 156 bits (394), Expect = 2.75e-45
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDV+D+GDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVVDSGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQV
Sbjct: 61 EALDILQSGACTQLKHEQV 79

[Close]

BLAST of Cucsat.G18284 vs. NCBI nr
Match: XP_031743588.1 (Golgi to ER traffic protein 4 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 3.40e-45
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQ+
Sbjct: 61 EALDILQSGACTQLKHEQI 79

[Close]

BLAST of Cucsat.G18284 vs. NCBI nr
Match: XP_011656863.1 (Golgi to ER traffic protein 4 homolog isoform X1 [Cucumis sativus] >KGN46554.1 hypothetical protein Csa_004968 [Cucumis sativus])

HSP 1 Score: 157 bits (398), Expect = 6.80e-45
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQ+
Sbjct: 61 EALDILQSGACTQLKHEQI 79

[Close]

BLAST of Cucsat.G18284 vs. ExPASy TrEMBL
Match: A0A0A0KCK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108520 PE=3 SV=1)

HSP 1 Score: 157 bits (398), Expect = 3.29e-45
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQ+
Sbjct: 61 EALDILQSGACTQLKHEQI 79

[Close]

BLAST of Cucsat.G18284 vs. ExPASy TrEMBL
Match: A0A6J1L0L9 (Golgi to ER traffic protein 4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111499290 PE=3 SV=1)

HSP 1 Score: 156 bits (394), Expect = 6.58e-45
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDV+D+GDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVVDSGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQV
Sbjct: 61 EALDILQSGACTQLKHEQV 79

[Close]

BLAST of Cucsat.G18284 vs. ExPASy TrEMBL
Match: A0A6J1L2N7 (Golgi to ER traffic protein 4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111499290 PE=3 SV=1)

HSP 1 Score: 156 bits (394), Expect = 1.31e-44
Identity = 77/79 (97.47%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDV+D+GDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVVDSGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQV
Sbjct: 61 EALDILQSGACTQLKHEQV 79

[Close]

BLAST of Cucsat.G18284 vs. ExPASy TrEMBL
Match: A0A6J1H5V6 (Golgi to ER traffic protein 4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111460396 PE=3 SV=1)

HSP 1 Score: 155 bits (391), Expect = 3.68e-44
Identity = 76/79 (96.20%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHI+KIEDV+D+GDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIMKIEDVVDSGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLKHEQV
Sbjct: 61 EALDILQSGACTQLKHEQV 79

[Close]

BLAST of Cucsat.G18284 vs. ExPASy TrEMBL
Match: A0A1S3CAV6 (Golgi to ER traffic protein 4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103498774 PE=3 SV=1)

HSP 1 Score: 153 bits (387), Expect = 7.40e-44
Identity = 77/79 (97.47%), Postives = 78/79 (98.73%), Query Frame = 0


Query: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60
          MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS
Sbjct: 1  MSSHPLQKTMSRARSRRIVLPPVQEHIIKIEDVIDTGDYYGAQQMYKSVSARYVAAERYS 60

Query: 61 EALDILQSGACTQLKHEQV 79
          EALDILQSGACTQLK EQ+
Sbjct: 61 EALDILQSGACTQLKLEQI 79

The following BLAST results are available for this feature:

BLAST of Cucsat.G18284 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6GKV1	1.2e-17	68.66	Protein GET4 OS=Arabidopsis thaliana OX=3702 GN=MDC12.19 PE=1 SV=1	[more]
Q5ZKG8	1.5e-04	33.33	Golgi to ER traffic protein 4 homolog OS=Gallus gallus OX=9031 GN=GET4 PE=2 SV=1	[more]
Q0P5I8	1.9e-04	33.33	Golgi to ER traffic protein 4 homolog OS=Bos taurus OX=9913 GN=GET4 PE=2 SV=1	[more]
Q7L5D6	2.5e-04	31.82	Golgi to ER traffic protein 4 homolog OS=Homo sapiens OX=9606 GN=GET4 PE=1 SV=1	[more]
Q9D1H7	2.5e-04	31.82	Golgi to ER traffic protein 4 homolog OS=Mus musculus OX=10090 GN=Get4 PE=1 SV=2	[more]

BLAST of Cucsat.G18284 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7013800.1	3.73e-60	95.05	hypothetical protein SDJN02_23967, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_031743589.1	2.31e-45	98.73	Golgi to ER traffic protein 4 homolog isoform X3 [Cucumis sativus]	[more]
XP_023522834.1	2.75e-45	97.47	Golgi to ER traffic protein 4 homolog [Cucurbita pepo subsp. pepo]	[more]
XP_031743588.1	3.40e-45	98.73	Golgi to ER traffic protein 4 homolog isoform X2 [Cucumis sativus]	[more]
XP_011656863.1	6.80e-45	98.73	Golgi to ER traffic protein 4 homolog isoform X1 [Cucumis sativus] >KGN46554.1 h...	[more]

BLAST of Cucsat.G18284 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCK7	3.29e-45	98.73	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108520 PE=3 SV=1	[more]
A0A6J1L0L9	6.58e-45	97.47	Golgi to ER traffic protein 4 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1L2N7	1.31e-44	97.47	Golgi to ER traffic protein 4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1H5V6	3.68e-44	96.20	Golgi to ER traffic protein 4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111460...	[more]
A0A1S3CAV6	7.40e-44	97.47	Golgi to ER traffic protein 4 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 21..230 e-value: 9.8E-56 score: 191.5 coord: 231..288 e-value: 1.9E-10 score: 42.7
IPR007317	Golgi to ER traffic protein 4	PFAM	PF04190	DUF410	coord: 230..284 e-value: 3.7E-10 score: 40.1 coord: 57..231 e-value: 1.1E-37 score: 130.2
IPR007317	Golgi to ER traffic protein 4	PANTHER	PTHR12875	UNCHARACTERIZED	coord: 229..288 coord: 10..230
None	No IPR available	PANTHER	PTHR12875:SF1	GOLGI TO ER TRAFFIC PROTEIN 4 HOMOLOG ISOFORM X1	coord: 229..288 coord: 10..230

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18284.T1	Cucsat.G18284.T1	mRNA
Cucsat.G18284.T2	Cucsat.G18284.T2	mRNA
Cucsat.G18284.T3	Cucsat.G18284.T3	mRNA
Cucsat.G18284.T5	Cucsat.G18284.T5	mRNA
Cucsat.G18284.T6	Cucsat.G18284.T6	mRNA
Cucsat.G18284.T4	Cucsat.G18284.T4	mRNA
Cucsat.G18284.T8	Cucsat.G18284.T8	mRNA
Cucsat.G18284.T7	Cucsat.G18284.T7	mRNA
Cucsat.G18284.T9	Cucsat.G18284.T9	mRNA
Cucsat.G18284.T10	Cucsat.G18284.T10	mRNA
Cucsat.G18284.T11	Cucsat.G18284.T11	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045048	protein insertion into ER membrane
biological_process	GO:0048767	root hair elongation
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005515	protein binding