Cucsat.G18276 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18276
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DExH-box ATP-dependent RNA helicase DExH9
Location	ctg3345: 4508051 .. 4510646 (-)
RNA-Seq Expression	Cucsat.G18276
Synteny	Cucsat.G18276

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACACAAAATTTCGGTTAACAAATTGGCGCGCCGTTTTCAGCCGTCTCCAAGCTAACTCCTTCTTAGGGTTTATTATTCATAGAGAAAAACCCTTGAGAGACTCTGCTTCCAAATCCTGAATTCCATAACAACCCTCTCCCCAATTCCAACCTTTCATGGGTCCTTCCAAGAGAAAACTGCTCGACGATGATTCCAGACAACCTTCCCCGAAGCAACACAGAACTAATGTCCCTGCCATTCTTGAACACGAACCGGTTGCGTGTCTTCACGATGTCTCCTACCCTGAGGGTTCTTTCAATCCTCTCCCATCATCTAGTCTATCTTCGACTGGAGAGGAGTTGGAACCGGCTAAGGTTTTCCCTTTCTCTCTTGACCCTTTTCAGTCTGAGGCTATCAAGTGCTTGGAAACTGGAGAATCTGTCATGGTAATTTAACTTTTTTGTCTAGCCAATTTTTTCATTGGTTTCTTTGGCTTTTGTTGGAGTTCATTGTTGGGTTTTTATTTTTCTATGGAGATACTTCATATTAACATTTTTATGAGTGTGAAAGAAAGTAATTGTAATGTTTTTCTTAGAGGAACTTGTGTTTGTTGAAATGAATGCATTCGGCCTTTATGTTACTAGACTATTATACGGGGAATACTAGAACAACCCAAGTTCAGCTCTAGTTTGGTTGATTGTCACAACTCTTTATTATGTAGAGTTCAGTAAGGGATAATCAGTTTTTTGACAGGTGTCTGCCCATACATCAGCTGGTAAAACTGTTGTGGCATTGTACGCAATTGCCATGTCTCTCCGGAATAAACAGCGTGTCATATACACCTCACCAATAAAGGCCCTCAGCAACCAAAAATATAGGGAATTTAAAGAAGAATTCTCAGATGTTGGTTTAATGACTGGGGATGTGACAATTGATCCAAATGCGTCTTGTCTGGTGTGTTTCTTGGCTTTTATTCACTGCTTCACTTTTTTAGCATTCTAAATTTGAAACCATTGATAAATGGGTGGTTTTTTCAACTTTAGGTCATGACGACAGAGATTTGGCGAAGCATGCAGTACAAAGGATCAGAGGTTACACGGGAAGTGGCATGGATTATTTTTGATGAAGTACATTACATGCGTGATCGGGAGCGTGGTGTTGTTTGGGAAGAGAGCATTGTCATGGCTCCAAAGAATGCTCGATTTGTTTTCCTCTCAGCAACTGTACCAAATGCAAAAGAATTTGCTGATTGGGTTGCCAAGGTTTCTCCGCTTTGTGGTTCAATTTTGTTATCAGTAATTAGTTGAAAATGAAAATACTTTTTCGATCAACTGCAAAAAGAGCTAAAATGATAATTTTGTAATGTTCTATTCTTGGAAGCTCTTGTTGGTTAGTCTCGTTTGCATGATGCTATGGAAGCCTTTTGAACATCAAATTTGTCTGTCCTTCCCATTTATCAGATCCTATATTAATTTTGTTGACTGTCCTTCCACTACATAGTTTTTATTTTTATAGGAAATAGGGAATGGATTGATCTTGGAGAAAAGAAACTTAGGCATTTGGTTTTGACATTAGATGACTTGCCTTTACTCTGTGAAGTTCATTTTATATGAGTTATATGGCATTTTCAATACATTTATTCTATAAGAAGGAATAAATAAAAAAATGATAAAAAATAGTGAGGTCATGTTGTAGATTTGTTAATATGCGGTTTGGTTGATTCCTATTAATGCAGGTCCACCATCAACCATGTCATATTGTTTATACTGACTATCGGCCAACGCCTCTTCAACACTATATTTTCCCATCTGGAAGTGAAGGCTTATACTTGGTGGTTGATGAAAAGGGGCATTTTCGCGAGGATAGCTTTCAAAAAGCTTTAAATGCACTTGTCCCTGTTAGTGACGGCGACAAGAAAAAGGAAAATAATGGGAAGTGGCAGAAGAGTTTGACTTTGGGCAAAACCGGTGAAGACAGTGATATATTTAAGATGGTGAAGATGATAATTCAGCGGCAATATGATCCTGTTATACTTTTCAGCTTTAGCAAAAGAGAATGTGAATTTCTTGCAATGCAGGTATGTCCTATGGTGTTATTGTGGTTGCTTAGTCGATCCCTACTGGGTAACTACTTGTTTGTGGTCTTTGTTTAATGGACTTTTTAGATGTGGTATTATCATTAGAAACTTGATGCTTATTAAGGATCCAAGATATGGTGGTGGATAGTCTCTTTGGGGACATCCGATAAAGTTTGAAGATATGATGGTAGATATCACTTTATAGTTCATTTATTTTATTTTTCTTTGAAGCGAAACTACTTTCATTCAAGGGTGAAAAACTTAAAACGAGTGAAGATTTAGATACCCAACAGAGGCAGAAGATACGAAAGAAAAATATCCTATTAGATAGTCTTGAAAACGGAAGTACGACTTTCATTACAAAACTCTTGGAAAAGTATGCCAAGATGAAGCCAAAAAAAAAAAAAAAAAAAAAACAGACAATTCTTTGTTAACGTTGTCATAGGATCTATTGGGTGAATGCATGACAGAGGCATTTCCATGAATAAGCTCTCACGCTTAGTAGTAATTGGTCAGAATCTTTAGAAACGTAGAGCCTTGAGGGTGATTGCAGACAGAAAGGGGAGGCGGTTTGCTTTCAGTTTATCATTATCTAAATAATAAGATTTGCATGTTGGTTATGTTAAGTTTTTTGAAAGGAGACGGTTTGGTTTCTGACTCGCTGTTGCTAACTATTGTATATGGGTCATTGCTTCTTTCCTTTCTGTTCATTTTGACATGGTTTCCTTGTTTGTTACAGATGGCAAAATTGGATCTAAATGGTGATGATGAAAAGGTGAACATAGAAACCATCTTTTGGAGTGCTATGGATATGCTTTCAGATGATGATAAGAAGCTCCCGCAGGCAAGCCACTCATTTTCAACAAAGTTTTGTATAAAAAACCGAGGTTGCAATTTTAGAGTAGGGTGTGGAGTAATAAGATATTTTTTGGGACTAAGAGATTTAGCAAGGAGTTTTGTCCCTAGCTAGGCATAATGTGTCTTTATTCTTTTGGATTGGAGCCTTCTTTCTGTATAGCTATTAGCTAGTCATTGATGCTTTTTTCTGGAGCTGATTTTCTGTATACCCCTTTTGTCTTTTTTCTTTTTCATGTTTCTCAATGAAAGCATGTTTTATCATAAAATATATTTTGCGGTTATACTTTAGATTTTACAGTTAATGGGGAAATTTGAAGGAAATCGGATTTTCTTGATATCTTTGATTGGTGAAAACTTTGTAGCTCTTTAATTATATAAATTAGTATGAAATTTAAACAGCTATGCAATTCTAGGTGTAACTTCTTGGTTTCTTGCTTTTTTTGGTCAGAGTTTCTTCTCCCTTTACTATGCAACTAGGTCAAGTATATTTGACTTCTGTTTTCCAACCTTTTAGTTCTGTTTCCTATTGTTACATGCAAACCTAACTAGCAGATTGAGATCGAATCTTTATGTACCTCCCTGTATTGCAGTCGTTGAGCTACTGCTCGCAAAACCTCTCCACAATTTTAAGTTGAGGGTGGTTTTTAATATATTTACTTTTAATGTCTAGCTGTGCAGGTACTATGACTTGTGTTTATTCTGGTATTAGAAAAACATTTGGATGATAGATAATTTATTCTTAAGAATTGCTGCGTAATTGATTAATATGTCTTGTTTCTTTAAAATTTAATCGTCCTTCCTTTTTCTATTGCTTTCAAATAGGTTTCAAATATGTTGCCTCTCTTGAAGCGTGGAATAGGGGTCCATCATTCTGGCTTGCTCCCTATTTTGAAGGAGGTGATCGAGATATTATTTCAAGAAGGGCTAATCAAGGTTAGAATTATGGGTCTAAAAAGAAATATCTTTATTTATTAACCATCTGATTGATTGCTGTCTCACGTGGCACGGGTGTTAAGCCAATAGAAAGGTGCCTCGTCTCAGGAAGGTGCATATCTTTTGTGTTTCTACCCCCCTGCCTTAGTTATCTCTTCTTCATCCTCTTCATCTGCTTAAGTTCTTTTTTCTTTGATGAAATAATTTCTTATCCTCAAATTAAAAAAAAAAAAAATTATAGAAAAGTAAAATAATAAACAGAAAATAAGACACTTTGTACGCATCAACTGCTACTGATTACTTTTTGTCATGATTTCTCTTCTAATTAGAATGCATTTAAAGAGCAAAGAAATTAACATTTTTATATTTAATACTGTAGAATATTTGATTTCTTTTTGTCATGTTATATTTTAAATTCCTTGGTCATTAAAACGTTGTCTTTAGTGTTTGTTTGCCACAGAGACCTTCAGCATTGGTTTAAACATGCCTGCAAAAACTGTAGTGTTCAGTAATGTTCGTAAGTTTGATGGGGATAAGTTTAGATGGTTATCAAGTGGTGAGTATATACAAATGAGTGGTCGAGCTGGACGGAGAGGAATTGATAAACGTGGGATATGTATCCTTATGGTGGACGAGAAACTGGAACCTTCAACTGCTAAAATGATGCTTAAAGGAAATGCGGATTGCTTGAACAGGTAGCTGCAGTATGGTTTTACTATTCAATATGTCAGAAGCAATAATACTGTCATAAAGTTCTTACGTGTAAGCTGCGGATATGCTATGTTGGAAGTACAGGGAAAAAATATAGAATATTGCAGAGTTTTCTTGCTATTTTCACTTCATTAGATGATTTTCCCACCTCATCCAAATGGAATTGATAAAACAAAATGTCTCCAGTGTGGAGAGGTGAAGTCCCTAAAGCGATGAAGTGGAATTGAAAATATCTGAGGAAGAAAAAGTGCATTTACATCCATTTCCATAAATTTTCTTTTTAATAATAACAGTAAAGAAACATTATTATTATGGTTCAAGTGTCCACTTAGGTAGGAATTAACTTCTTATGAGTTTCATTGATACCCAAACGTTGTAGGGTCATCTGGATTGTCTCGTGAAATTTGTCGAGGTGTGTGTAAGCTGGCGTTGGATATAAAAAGATGATAATAATAATAATAATAACAAAGTTGGAATAATTATGGAAACTGCAGCATCGAGGGAAAGAGCATTAGATTTCCTAGAATATATAGCACATTCTAGGCCCTTGATAATTGGGTCAAATTTCCCTCATTATGGAACTGGTAAACAATAGTCCAAAGAATAATTTAGTTGCTGAGCAGAAATACAGCCATTAAGTTACCTGGCTAACCAAGATGTACCATAGACGATATCACAATATGCATTGTATTCTTTATTTTTCCATTTATCAAAGTTTTTGCTTTTAGTAAGATATAAAAGGTGAGATCAATTTTCTGTTTAATTGTGCCTATAAGGTTGTGTATTAGAGCGTTACCATGTTCACACAATCCTTTTTTTTAAAAATTATTCTGCTGTTTAAATAAGTTGTTCTGACATCTTATCCTTTTCTGTATTTTAGTGCTTTTCACTTGAGCTATAACATGCTCTTGAATCAAATCCGTTCTGAAGACGGCAATCCTGAAAATCTGCTGCGTAATTCCTTCTACCAGTTCCAAGCCGACCGCAACATACCTAACCTTGAGGTTAGTTTTTGCACAGATAAGGTGACTTGTAAAGAAAGAAGTTAATTGAGATAAAGAGAACCAATTCTTAGCAACTGAAAAGGGAATCAAAGATCTTTAACGAGAATGGTGAAATAATGCGTTAGGATGGTTTTATTTAATGTTTTTCATCCTTCAAAATTGTCTTATCACCAAGCTTTTGAATTTTATTTGCACTTTGCAGAACATGGCATAGAGGAATTTTTCATATTTTTACCATTAACCTCTGTGATTTTTATTAGTTGAATATGATATCTTTCACACTGCATATGCAACTTATCTAGTTATCTTCTTACCTACAAGTCTTTGACGATTTGCTTTTCCTCTAATGGTTTGCTGAGAATTCTGATCTAGTTTTCGTATAATTTGAAAAAGGTCTGCTTTTCATATTAAAATTTCACTCATTTGAGAAATGCTTCTCTGATTACCGTATGTCTACTTAATAGCTGCACTATATTATGATAATATAAGATGGCATACTAAATATAGTTATTACTGCAAATAAGATGGCACTATAATATGAATTTTTATAATATATGGGGAACTTCTTTGTGGAGGAACCTATAGCACGTGGAAGATTGAACCATATTGTGGTGGGTAATGTTTATGTAAGATGGCGTACTAATTCTAGTTATTACTGCAGAAACAAGTGAAAAGCCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTACTAAATCAGTACAAAAGTTTAAAGAAGGATATTCGTAACATTGTGTTGTCTCCTAGATACTGCTTGCCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACCGTAATGATGAGATTTCTTCTACATTTTCCATAAAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTGTTTCCGAAGGTGATGTATCAATAATTTCTCTTTCATTTATATTTTTTTTATTCCAATTTTAGCTTATTAGTCTTCTTCCGATTCTGAACTTTAATTTTTGTTCCAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGACGTTCTTACAAGATGCATTGTCAGTAAAGATGGCATTGGGAAAAAAAATGTTAGGATTATTCAATTGAAAGAGCACGGAGAACCCCATGTTGTTTCCATACCAATATCTCAGGTATTGAGTTAGATGATCTATTATATGCACAGCTTCATGTGAACTGACAGTAGAGGATTAGAAATATTAGATCTCATATTAGATCTCTTCCCGATTGAGATTAGTAAAGATCAAAGGTTACCAATATTAAGAGTGACAAGATCTAGACTAAATTAAACATTAATTGATATTGTATTATTATCAAGACATGTTTGTTTTTTTAACATACCAAAAGTGATTTTGACCATTGTAAAATGACTCCTAAGTATAATATAAATTGTTTACATTATTCTCAGCTTCTGTCAGCTACCATTTTGATTTAATTAATTTATTTTTTTGTTTACAACAGATCAATACTTTAGCTAGTATTCGTATACTTATACCAAATGATCTTTTGCCGTTGGAAGCTCGAGAGAATACATTGAAGAAGATTTCTGAAGTTCTATCAAGATTTCCAAAAGGAGTTCCCCTTCTAGATCCAGAAGAGGATATGAAAGTACGCAACTCAATGCTAATACAATTTTTAAAAAAAATCTTTTCTGGTTGATGTGAGGATTTTTTTCTCTATTACATTGAAGTCTATGGGACTCATATATGATATGAAATCTTTGGTGGTACTTAGGTTAGTATAGCGAAATCTGTAAGCTTAAATTATTTAGTCCCTAAACTTTTAAGTTTCCGTTTATTTGTCATTTTTAAGTTTGTTCTATTACTTGTAAATTTCAACTCTAAGGCTGATAGATTAACCTAGTGGTAAATAGGGAGACATGATCTTGATAAAGGGCTAAGAGTTCGTGGGTTCAATCCATAGTGGCCACCTACCAAGGATTCAATCTCTTTCCGGTTCCCCTAACACCCAAGTGTTGTAGATTTAGATGGGTTATCTGGTGAGATTAGTCAAGGTGTGCTAAGCTTAAACAAAATGACACAAACGTCATTTCTTAAGTTAAGAAACTTGTTCGATACTGAAAATTTAGAGATCTAATAGGCCCTCTTTAAAGTTTAGGAGTCTTTTTGACTGGACTAAATTTATGATTTAATCGATCTATAATTTAATTCACCCGTCCACTAAAAAAAACCAACTCTGATTCAGATCTGAGCATTTGTTGGATGGAAGTATAATCTAGCATCTATTTGCTACTGCCGTGCGTTCTTTCTAGATTTTAATTTTTTTTCACTTCATTTGATATTCAGATCCAAAGTAGTTCATACAGAAAGGCTGTGCGTAGAACAGAGGCTTTGGAGAGCCTCTTTGACAAGCATGAGGTGGCAAAATCGACACTTGTTGAGGAGAAGCTCAAAGCATTACATTTGAAGCAGGAGTTAACAGCTAAAATCAGATCAATTAAGAAACAATTGCGTTCTTCTTCTGTATTGGCCTTCAAAGATGAACTGAAGGCCAGGAAACGAGTATTGCGGAGGCTTGGGTAATTGATCTTTTTCTCTTGTCTAGCAACTCTTTAGGTTTTATTTATTTTTTCTGTCACCAAATAGGTAACTTTTTATTTATTGACGATTTTAAAAAGTTGGTGTAGTTTGTTCAGTTAATTTCAAATAATCTGGTTCTATGAGAGAATTCACCCACTGCAGCTTAATTCGTTTTGTAACTTCCTTAGCGTAGGAGCTCTTCTTATGGACATATCATTTTATTAATAAAATAGTTCCCCGGAACAAATTTTTAAGATGTATATGGTAAAAGGTTGAAAACAGTAATGTTTACTTCGGTAGTTCTGAATGTTTTATTTTAAACATGGATACACCACTAAATGATTTGTTTAGAATGAAATTTCAAAATTTTTTAAGCAAAGAGTAGTGATTTACATAATTGTCTGACTTCATCCTTAATGGCACGATCTCATATTTTGTTTCGACTTTCCAATTTGGTGAGTGCGTTTGTATTCTAAGAATCTGTTATATCATGCTAAAGAAACGGTCTATAATTTCTTGTCATGTACCATGGATTCAGAGTAGTCTGGTTGTGTCACTTCGAATTGATTATTTAGATTTCATGACAGAATCAAAATATCTTCCATTGTAGATGCGTTGACGTAACAGTATCTTTTTTTTTCCCCCACACTACAGTTACACCACAAGTGATGATGTTGTGGAACTGAAAGGCAAGGTTGCTTGTGAAATCAGTAGTGCAAATGAATTGACTCTTTCAGAGCTGATGTTCAACGGGGTTTTCAAGGACACAAAAGTGGAGGAAATTGTCGCTCTGCTATCTTGTTTTGTGTGGCAAGAAAAACTTCAGGATGCAGCAAAGCCTAGGGAAGAGCTTGAGCTGCTTTTCATTCAACTACAAGACACAGCTCGAAGGGTTGCTAAGGTCCAGCTTGAATGCAAGGTTAGCATTAGTTTCTATTTGTCCAAGTTCATCTACTCAATCCTTTTTGTTTACTCTCTATATTGTTAAACTCGGCTAGTAATGAGTTCAAAGAAGTGTCACGTTGAGTTTTAGTTTCTTTTAATCTATTTGGTGATAGATCAATGGATAAGGCACCTATTGCTTTTCATTAGATTGAAGCATTAATCCACCATCCCGAACTATATATGCACACACACACAGATCCATTTGATGATATTGATTTACTGTTCCTATTTAAGATAAATAGAACTTCTTGATGACTCAAACGCATTTTGATTCTTAGGTGGGGAGGATTTCTTGTTACCCCCTCCCTATTTTTGTACCACTAAGACGAGAATGGCTGATGATAGATGTGTGACGAATTGCAGGTCGAAATTGATGTAGAAGGCTTTGTGAGTTCATTTAGACCGGATATTATGGAGGCTGTATATGCTTGGGCAAAAGGATCCAAATTCTATGAGATAATGGAAATAACACAGGTTTTTGAGGGGAGCTTGATTAGAGCGATAAGAAGACTTGAAGAAGTTTTGCAACAACTTATATTAGCTTCAAAGTCCATTGGTGAAACTGAACTTGAAACCAAGTTTGAAGAGGCTGTTTCCAAAATCAAGAGGGATATTGTTTTTGCTGCTTCTTTGTACTTGTAGTTGTTTCCCTTATGTTTCTTATTTTAATTTTTTGTATAACATTGAGTGGTTAATTTATAATTATATGCGGCTCTTTGTAAATTTTCTTATATTTTTTTGGAAAAGAAAAAACATTTCTAGTCCTTGAATTTTAATGTACTACAATTGGTTCTTAACAGCACATTAAATGCCATATCGAATTAACTGACCATCAATTACTTTA

Coding sequence (CDS)

ATGGGTCCTTCCAAGAGAAAACTGCTCGACGATGATTCCAGACAACCTTCCCCGAAGCAACACAGAACTAATGTCCCTGCCATTCTTGAACACGAACCGGTTGCGTGTCTTCACGATGTCTCCTACCCTGAGGGTTCTTTCAATCCTCTCCCATCATCTAGTCTATCTTCGACTGGAGAGGAGTTGGAACCGGCTAAGGTTTTCCCTTTCTCTCTTGACCCTTTTCAGTCTGAGGCTATCAAGTGCTTGGAAACTGGAGAATCTGTCATGGTGTCTGCCCATACATCAGCTGGTAAAACTGTTGTGGCATTGTACGCAATTGCCATGTCTCTCCGGAATAAACAGCGTGTCATATACACCTCACCAATAAAGGCCCTCAGCAACCAAAAATATAGGGAATTTAAAGAAGAATTCTCAGATGTTGGTTTAATGACTGGGGATGTGACAATTGATCCAAATGCGTCTTGTCTGGTCATGACGACAGAGATTTGGCGAAGCATGCAGTACAAAGGATCAGAGGTTACACGGGAAGTGGCATGGATTATTTTTGATGAAGTACATTACATGCGTGATCGGGAGCGTGGTGTTGTTTGGGAAGAGAGCATTGTCATGGCTCCAAAGAATGCTCGATTTGTTTTCCTCTCAGCAACTGTACCAAATGCAAAAGAATTTGCTGATTGGGTTGCCAAGGTCCACCATCAACCATGTCATATTGTTTATACTGACTATCGGCCAACGCCTCTTCAACACTATATTTTCCCATCTGGAAGTGAAGGCTTATACTTGGTGGTTGATGAAAAGGGGCATTTTCGCGAGGATAGCTTTCAAAAAGCTTTAAATGCACTTGTCCCTGTTAGTGACGGCGACAAGAAAAAGGAAAATAATGGGAAGTGGCAGAAGAGTTTGACTTTGGGCAAAACCGGTGAAGACAGTGATATATTTAAGATGGTGAAGATGATAATTCAGCGGCAATATGATCCTGTTATACTTTTCAGCTTTAGCAAAAGAGAATGTGAATTTCTTGCAATGCAGATGGCAAAATTGGATCTAAATGGTGATGATGAAAAGGTGAACATAGAAACCATCTTTTGGAGTGCTATGGATATGCTTTCAGATGATGATAAGAAGCTCCCGCAGGTTTCAAATATGTTGCCTCTCTTGAAGCGTGGAATAGGGGTCCATCATTCTGGCTTGCTCCCTATTTTGAAGGAGGTGATCGAGATATTATTTCAAGAAGGGCTAATCAAGTGTTTGTTTGCCACAGAGACCTTCAGCATTGGTTTAAACATGCCTGCAAAAACTGTAGTGTTCAGTAATGTTCGTAAGTTTGATGGGGATAAGTTTAGATGGTTATCAAGTGGTGAGTATATACAAATGAGTGGTCGAGCTGGACGGAGAGGAATTGATAAACGTGGGATATGTATCCTTATGGTGGACGAGAAACTGGAACCTTCAACTGCTAAAATGATGCTTAAAGGAAATGCGGATTGCTTGAACAGTGCTTTTCACTTGAGCTATAACATGCTCTTGAATCAAATCCGTTCTGAAGACGGCAATCCTGAAAATCTGCTGCGTAATTCCTTCTACCAGTTCCAAGCCGACCGCAACATACCTAACCTTGAGAAACAAGTGAAAAGCCTTGAAGAGGAGAGGGATTCCATAGTGATTGAAGAGGAAGATAGTTTGAAGAATTATTATGATTTACTAAATCAGTACAAAAGTTTAAAGAAGGATATTCGTAACATTGTGTTGTCTCCTAGATACTGCTTGCCATTTCTGCAACCTGGCAGGCTTGTATCTATTGAATGCAACCGTAATGATGAGATTTCTTCTACATTTTCCATAAAGGACCAGGTTACGTGGGGATTGATAATTAATTTTCAAAGGGTGAAAGGTGTTTCCGAAGAGGATGCTAGCATGAAACCAGAATCTGCAAACTACACTGTGGACGTTCTTACAAGATGCATTGTCAGTAAAGATGGCATTGGGAAAAAAAATGTTAGGATTATTCAATTGAAAGAGCACGGAGAACCCCATGTTGTTTCCATACCAATATCTCAGATCAATACTTTAGCTAGTATTCGTATACTTATACCAAATGATCTTTTGCCGTTGGAAGCTCGAGAGAATACATTGAAGAAGATTTCTGAAGTTCTATCAAGATTTCCAAAAGGAGTTCCCCTTCTAGATCCAGAAGAGGATATGAAAATCCAAAGTAGTTCATACAGAAAGGCTGTGCGTAGAACAGAGGCTTTGGAGAGCCTCTTTGACAAGCATGAGGTGGCAAAATCGACACTTGTTGAGGAGAAGCTCAAAGCATTACATTTGAAGCAGGAGTTAACAGCTAAAATCAGATCAATTAAGAAACAATTGCGTTCTTCTTCTGTATTGGCCTTCAAAGATGAACTGAAGGCCAGGAAACGAGTATTGCGGAGGCTTGGTTACACCACAAGTGATGATGTTGTGGAACTGAAAGGCAAGGTTGCTTGTGAAATCAGTAGTGCAAATGAATTGACTCTTTCAGAGCTGATGTTCAACGGGGTTTTCAAGGACACAAAAGTGGAGGAAATTGTCGCTCTGCTATCTTGTTTTGTGTGGCAAGAAAAACTTCAGGATGCAGCAAAGCCTAGGGAAGAGCTTGAGCTGCTTTTCATTCAACTACAAGACACAGCTCGAAGGGTTGCTAAGGTCCAGCTTGAATGCAAGGTCGAAATTGATGTAGAAGGCTTTGTGAGTTCATTTAGACCGGATATTATGGAGGCTGTATATGCTTGGGCAAAAGGATCCAAATTCTATGAGATAATGGAAATAACACAGGTTTTTGAGGGGAGCTTGATTAGAGCGATAAGAAGACTTGAAGAAGTTTTGCAACAACTTATATTAGCTTCAAAGTCCATTGGTGAAACTGAACTTGAAACCAAGTTTGAAGAGGCTGTTTCCAAAATCAAGAGGGATATTGTTTTTGCTGCTTCTTTGTACTTGTAG

Protein sequence

MGPSKRKLLDDDSRQPSPKQHRTNVPAILEHEPVACLHDVSYPEGSFNPLPSSSLSSTGEELEPAKVFPFSLDPFQSEAIKCLETGESVMVSAHTSAGKTVVALYAIAMSLRNKQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWVAKVHHQPCHIVYTDYRPTPLQHYIFPSGSEGLYLVVDEKGHFREDSFQKALNALVPVSDGDKKKENNGKWQKSLTLGKTGEDSDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKLDLNGDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKLEPSTAKMMLKGNADCLNSAFHLSYNMLLNQIRSEDGNPENLLRNSFYQFQADRNIPNLEKQVKSLEEERDSIVIEEEDSLKNYYDLLNQYKSLKKDIRNIVLSPRYCLPFLQPGRLVSIECNRNDEISSTFSIKDQVTWGLIINFQRVKGVSEEDASMKPESANYTVDVLTRCIVSKDGIGKKNVRIIQLKEHGEPHVVSIPISQINTLASIRILIPNDLLPLEARENTLKKISEVLSRFPKGVPLLDPEEDMKIQSSSYRKAVRRTEALESLFDKHEVAKSTLVEEKLKALHLKQELTAKIRSIKKQLRSSSVLAFKDELKARKRVLRRLGYTTSDDVVELKGKVACEISSANELTLSELMFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKVEIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILASKSIGETELETKFEEAVSKIKRDIVFAASLYL

Homology

[Close]

BLAST of Cucsat.G18276 vs. ExPASy Swiss-Prot
Match: Q9XIF2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR4 PE=2 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 1.8e-67
Identity = 129/151 (85.43%), Postives = 144/151 (95.36%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MF+G+FKD KVEE+V+LLSCFVW+E+L DAAKPREEL+LLFIQLQDTARRVA+VQL+CKV
Sbjct: 838 MFSGIFKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKV 897

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVE FV SFRPDIMEAVYAWAKGSKFYE+MEI +VFEGSLIRAIRR+EEVLQQLI+A+
Sbjct: 898 EIDVESFVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGSLIRAIRRMEEVLQQLIVAA 957

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 152
           KSIGET+LE K EEAVSKIKRDIVFAASLYL
Sbjct: 958 KSIGETQLEAKLEEAVSKIKRDIVFAASLYL 988

[Close]

BLAST of Cucsat.G18276 vs. ExPASy Swiss-Prot
Match: P42285 (Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3)

HSP 1 Score: 166.4 bits (420), Expect = 2.5e-40
Identity = 84/151 (55.63%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 1    MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
            MFNG+F D   E+  ALLSCFV+QE   +  K  E+L     Q+Q+ A+R+AKV  E K+
Sbjct: 892  MFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKL 951

Query: 61   EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
            EID E ++SSF+P +M+ VY WA G+ F  I ++T VFEGS+IR +RRLEE+L+Q+  A+
Sbjct: 952  EIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAA 1011

Query: 121  KSIGETELETKFEEAVSKIKRDIVFAASLYL 152
            K+IG TELE KF E ++KIKRDIVFAASLYL
Sbjct: 1012 KAIGNTELENKFAEGITKIKRDIVFAASLYL 1042

[Close]

BLAST of Cucsat.G18276 vs. ExPASy Swiss-Prot
Match: Q9CZU3 (Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 4.3e-40
Identity = 84/151 (55.63%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 1    MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
            MFNG+F D   E+  ALLSCFV+QE   +  K  E+L     Q+Q+ A+R+AKV  E K+
Sbjct: 890  MFNGLFNDLSSEQATALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKL 949

Query: 61   EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
            EID E ++SSF+P +M+ VY WA G+ F  I ++T VFEGS+IR +RRLEE+L+Q+  A+
Sbjct: 950  EIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAA 1009

Query: 121  KSIGETELETKFEEAVSKIKRDIVFAASLYL 152
            K+IG TELE KF E ++KIKRDIVFAASLYL
Sbjct: 1010 KAIGNTELENKFAEGITKIKRDIVFAASLYL 1040

[Close]

BLAST of Cucsat.G18276 vs. ExPASy Swiss-Prot
Match: Q23223 (mRNA transport homolog 4 OS=Caenorhabditis elegans OX=6239 GN=mtr-4 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.7e-34
Identity = 77/151 (50.99%), Postives = 104/151 (68.87%), Query Frame = 0


Query: 1    MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
            +  G+F    V +  ALLSCFV+Q+K   A K   EL+    +L + AR VAKV  ECK+
Sbjct: 877  LLKGIFNTLDVAQTAALLSCFVFQDKCA-APKLATELQTCLSELHEQARNVAKVSNECKM 936

Query: 61   EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
            E+  + +VSSF P +M+ VY W  G+ F EI++ T VFEGS+IR +RRLEEVL+++I A+
Sbjct: 937  EVMEDKYVSSFNPGLMDVVYQWVNGATFSEIVKTTDVFEGSIIRTLRRLEEVLREMINAA 996

Query: 121  KSIGETELETKFEEAVSKIKRDIVFAASLYL 152
            K++   ELE KFE+A   +KRDIVFAASLYL
Sbjct: 997  KALANKELEQKFEDARKNLKRDIVFAASLYL 1026

[Close]

BLAST of Cucsat.G18276 vs. ExPASy Swiss-Prot
Match: Q9ZVW2 (DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana OX=3702 GN=HEN2 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 3.5e-34
Identity = 73/152 (48.03%), Postives = 108/152 (71.05%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNG F D    ++ AL SCF+  +K  +    R EL     QLQD+AR++A++Q ECK+
Sbjct: 844 MFNGTFNDLDHHQVAALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKL 903

Query: 61  EIDVEGFV-SSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILA 120
           EIDVE +V S+ RP +M+ +Y+W+KG+ F EI+++T +FEGS+IR+ RRL+E L QL  A
Sbjct: 904 EIDVEEYVESTIRPFLMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAA 963

Query: 121 SKSIGETELETKFEEAVSKIKRDIVFAASLYL 152
           ++++GE+ LE+KF  A   ++R I+FA SLYL
Sbjct: 964 AEAVGESSLESKFAAASESLRRGIMFANSLYL 995

[Close]

BLAST of Cucsat.G18276 vs. NCBI nr
Match: XP_004140482.1 (DExH-box ATP-dependent RNA helicase DExH9 [Cucumis sativus] >KGN46581.1 hypothetical protein Csa_004956 [Cucumis sativus])

HSP 1 Score: 290 bits (742), Expect = 2.59e-89
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV
Sbjct: 844 MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 903

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS
Sbjct: 904 EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 963

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELETKFEEAVSKIKRDIVFAASLYL
Sbjct: 964 KSIGETELETKFEEAVSKIKRDIVFAASLYL 994

[Close]

BLAST of Cucsat.G18276 vs. NCBI nr
Match: KAE8735710.1 (hypothetical protein F3Y22_tig00000340pilonHSYRG01338 [Hibiscus syriacus])

HSP 1 Score: 267 bits (682), Expect = 1.10e-88
Identity = 137/151 (90.73%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MF+GV KD K EE+V+LLSCFVWQEKLQDAAKPREELELLF QLQDTARR+AKVQLECKV
Sbjct: 54  MFSGVLKDIKAEEMVSLLSCFVWQEKLQDAAKPREELELLFTQLQDTARRMAKVQLECKV 113

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           +IDVE FVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILA+
Sbjct: 114 QIDVESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAA 173

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGE +LE+KFEEAVSKIKRDIVFAASLYL
Sbjct: 174 KSIGERDLESKFEEAVSKIKRDIVFAASLYL 204

[Close]

BLAST of Cucsat.G18276 vs. NCBI nr
Match: XP_008458145.1 (PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo] >TYK14014.1 DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (736), Expect = 1.90e-88
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNGVFKD KVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV
Sbjct: 844 MFNGVFKDIKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 903

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS
Sbjct: 904 EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 963

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELETKFEEAVSKIKRDIVFAASLYL
Sbjct: 964 KSIGETELETKFEEAVSKIKRDIVFAASLYL 994

[Close]

BLAST of Cucsat.G18276 vs. NCBI nr
Match: GAY63660.1 (hypothetical protein CUMW_227430 [Citrus unshiu] >GAY63661.1 hypothetical protein CUMW_227430 [Citrus unshiu])

HSP 1 Score: 271 bits (693), Expect = 4.47e-88
Identity = 139/151 (92.05%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           +FNGV KD KVEE+V+LLSCFVWQEKLQDA+KPREELELLF QLQDTARRVAKVQLECKV
Sbjct: 216 IFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKV 275

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           +IDVEGFV+SFRPDIMEAVYAWAKGSKFYEIMEIT VFEGSLIRAIRRLEEVLQQLILA+
Sbjct: 276 QIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAA 335

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELE KFEEAVSKIKRDIVFAASLYL
Sbjct: 336 KSIGETELEAKFEEAVSKIKRDIVFAASLYL 366

[Close]

BLAST of Cucsat.G18276 vs. NCBI nr
Match: XP_038874775.1 (DExH-box ATP-dependent RNA helicase DExH9 isoform X2 [Benincasa hispida])

HSP 1 Score: 283 bits (725), Expect = 1.51e-87
Identity = 146/151 (96.69%), Postives = 149/151 (98.68%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNGVFKD KVEE+VALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV
Sbjct: 736 MFNGVFKDIKVEEVVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 795

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVEGFV+SFRPDIMEAVY WAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILA+
Sbjct: 796 EIDVEGFVNSFRPDIMEAVYGWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAA 855

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELETKFEEAVSKIKRDIVFAASLYL
Sbjct: 856 KSIGETELETKFEEAVSKIKRDIVFAASLYL 886

[Close]

BLAST of Cucsat.G18276 vs. ExPASy TrEMBL
Match: A0A0A0KFR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109760 PE=4 SV=1)

HSP 1 Score: 290 bits (742), Expect = 1.25e-89
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV
Sbjct: 844 MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 903

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS
Sbjct: 904 EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 963

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELETKFEEAVSKIKRDIVFAASLYL
Sbjct: 964 KSIGETELETKFEEAVSKIKRDIVFAASLYL 994

[Close]

BLAST of Cucsat.G18276 vs. ExPASy TrEMBL
Match: A0A6A3D280 (DSHCT domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000340pilonHSYRG01338 PE=4 SV=1)

HSP 1 Score: 267 bits (682), Expect = 5.32e-89
Identity = 137/151 (90.73%), Postives = 145/151 (96.03%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MF+GV KD K EE+V+LLSCFVWQEKLQDAAKPREELELLF QLQDTARR+AKVQLECKV
Sbjct: 54  MFSGVLKDIKAEEMVSLLSCFVWQEKLQDAAKPREELELLFTQLQDTARRMAKVQLECKV 113

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           +IDVE FVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILA+
Sbjct: 114 QIDVESFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAA 173

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGE +LE+KFEEAVSKIKRDIVFAASLYL
Sbjct: 174 KSIGERDLESKFEEAVSKIKRDIVFAASLYL 204

[Close]

BLAST of Cucsat.G18276 vs. ExPASy TrEMBL
Match: A0A5D3CSJ2 (DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold268G00110 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 9.21e-89
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNGVFKD KVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV
Sbjct: 844 MFNGVFKDIKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 903

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS
Sbjct: 904 EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 963

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELETKFEEAVSKIKRDIVFAASLYL
Sbjct: 964 KSIGETELETKFEEAVSKIKRDIVFAASLYL 994

[Close]

BLAST of Cucsat.G18276 vs. ExPASy TrEMBL
Match: A0A1S3C6P7 (DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo OX=3656 GN=LOC103497670 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 9.21e-89
Identity = 150/151 (99.34%), Postives = 150/151 (99.34%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           MFNGVFKD KVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV
Sbjct: 844 MFNGVFKDIKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 903

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS
Sbjct: 904 EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 963

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELETKFEEAVSKIKRDIVFAASLYL
Sbjct: 964 KSIGETELETKFEEAVSKIKRDIVFAASLYL 994

[Close]

BLAST of Cucsat.G18276 vs. ExPASy TrEMBL
Match: A0A2H5QG96 (DSHCT domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_227430 PE=4 SV=1)

HSP 1 Score: 271 bits (693), Expect = 2.16e-88
Identity = 139/151 (92.05%), Postives = 146/151 (96.69%), Query Frame = 0


Query: 1   MFNGVFKDTKVEEIVALLSCFVWQEKLQDAAKPREELELLFIQLQDTARRVAKVQLECKV 60
           +FNGV KD KVEE+V+LLSCFVWQEKLQDA+KPREELELLF QLQDTARRVAKVQLECKV
Sbjct: 216 IFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECKV 275

Query: 61  EIDVEGFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGSLIRAIRRLEEVLQQLILAS 120
           +IDVEGFV+SFRPDIMEAVYAWAKGSKFYEIMEIT VFEGSLIRAIRRLEEVLQQLILA+
Sbjct: 276 QIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAA 335

Query: 121 KSIGETELETKFEEAVSKIKRDIVFAASLYL 151
           KSIGETELE KFEEAVSKIKRDIVFAASLYL
Sbjct: 336 KSIGETELEAKFEEAVSKIKRDIVFAASLYL 366

The following BLAST results are available for this feature:

BLAST of Cucsat.G18276 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XIF2	1.8e-67	85.43	DExH-box ATP-dependent RNA helicase DExH9 OS=Arabidopsis thaliana OX=3702 GN=MTR...	[more]
P42285	2.5e-40	55.63	Exosome RNA helicase MTR4 OS=Homo sapiens OX=9606 GN=MTREX PE=1 SV=3	[more]
Q9CZU3	4.3e-40	55.63	Exosome RNA helicase MTR4 OS=Mus musculus OX=10090 GN=Mtrex PE=1 SV=1	[more]
Q23223	2.7e-34	50.99	mRNA transport homolog 4 OS=Caenorhabditis elegans OX=6239 GN=mtr-4 PE=3 SV=1	[more]
Q9ZVW2	3.5e-34	48.03	DExH-box ATP-dependent RNA helicase DExH10 OS=Arabidopsis thaliana OX=3702 GN=HE...	[more]

BLAST of Cucsat.G18276 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140482.1	2.59e-89	100.00	DExH-box ATP-dependent RNA helicase DExH9 [Cucumis sativus] >KGN46581.1 hypothet...	[more]
KAE8735710.1	1.10e-88	90.73	hypothetical protein F3Y22_tig00000340pilonHSYRG01338 [Hibiscus syriacus]	[more]
XP_008458145.1	1.90e-88	99.34	PREDICTED: DExH-box ATP-dependent RNA helicase DExH9 [Cucumis melo] >TYK14014.1 ...	[more]
GAY63660.1	4.47e-88	92.05	hypothetical protein CUMW_227430 [Citrus unshiu] >GAY63661.1 hypothetical protei...	[more]
XP_038874775.1	1.51e-87	96.69	DExH-box ATP-dependent RNA helicase DExH9 isoform X2 [Benincasa hispida]	[more]

BLAST of Cucsat.G18276 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFR7	1.25e-89	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109760 PE=4 SV=1	[more]
A0A6A3D280	5.32e-89	90.73	DSHCT domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000...	[more]
A0A5D3CSJ2	9.21e-89	99.34	DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A1S3C6P7	9.21e-89	99.34	DExH-box ATP-dependent RNA helicase DExH9 OS=Cucumis melo OX=3656 GN=LOC10349767...	[more]
A0A2H5QG96	2.16e-88	92.05	DSHCT domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_227430 PE=4 SV...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 422..449
None	No IPR available	GENE3D	1.10.3380.30		coord: 665..877 e-value: 3.8E-71 score: 240.7
None	No IPR available	GENE3D	2.40.30.300		coord: 486..617 e-value: 6.5E-25 score: 90.1
None	No IPR available	PANTHER	PTHR12131	ATP-DEPENDENT RNA AND DNA HELICASE	coord: 1..885
None	No IPR available	PANTHER	PTHR12131:SF7	EXOSOME RNA HELICASE MTR4	coord: 1..885
None	No IPR available	CDD	cd18795	SF2_C_Ski2	coord: 136..371 e-value: 3.10075E-58 score: 194.309
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	SMART	SM01142	DSHCT_2	coord: 709..886 e-value: 2.0E-84 score: 296.5
IPR012961	ATP-dependent RNA helicase Ski2, C-terminal	PFAM	PF08148	DSHCT	coord: 712..881 e-value: 2.3E-48 score: 163.9
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 270..359 e-value: 1.1E-17 score: 74.7
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 274..359 e-value: 1.3E-5 score: 25.5
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 204..406 score: 12.520607
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 1..143 e-value: 0.0051 score: 19.2
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 1..128 score: 18.286596
IPR016438	ATP-dependent RNA helicase Ski2-like	PIRSF	PIRSF005198	SKI2	coord: 1..886 e-value: 0.0 score: 1165.7
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 5..113 e-value: 2.1E-8 score: 34.1
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 137..391 e-value: 9.8E-88 score: 295.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 1..136 e-value: 1.0E-60 score: 206.2
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 3..373
IPR025696	rRNA-processing arch domain	PFAM	PF13234	rRNA_proc-arch	coord: 413..684 e-value: 7.9E-72 score: 242.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18276.T1	Cucsat.G18276.T1	mRNA
Cucsat.G18276.T3	Cucsat.G18276.T3	mRNA
Cucsat.G18276.T7	Cucsat.G18276.T7	mRNA
Cucsat.G18276.T2	Cucsat.G18276.T2	mRNA
Cucsat.G18276.T5	Cucsat.G18276.T5	mRNA
Cucsat.G18276.T6	Cucsat.G18276.T6	mRNA
Cucsat.G18276.T9	Cucsat.G18276.T9	mRNA
Cucsat.G18276.T8	Cucsat.G18276.T8	mRNA
Cucsat.G18276.T4	Cucsat.G18276.T4	mRNA
Cucsat.G18276.T10	Cucsat.G18276.T10	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0006401	RNA catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding