Cucsat.G18274 (gene) Cucumber (B10) v3

Overview
NameCucsat.G18274
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Descriptionpatellin-1-like
Locationctg3345: 4484640 .. 4485783 (-)
RNA-Seq ExpressionCucsat.G18274
SyntenyCucsat.G18274
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGCCACTCCATTCTTTCTCTGTCCTATAAAATCCACTCTGCTTCGTCATTCTTCCATCCCATCCTTTCTTTCTCTTCTTCAATTCCTTCTCCTTTTCCACAAGGATTTAGCAATGGCTACTGCTGAGGTAAATTTGGCTTCCCATAACTATGCATAATGTTTCTCTCTCTCTGCTTTTTTTTCTTCTTTAAATTAATCATAATTAAAAATCATATAACTATGTTTCTCGATACATTTGAACTTCTTTTATATATGGATATGTGAAATTCTTTTTAAATATTTTGAATAAATTTGGAACTGGGTCATTGTTCTTTGCAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGGCAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAGAAGAATGAAGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGAAGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGAAGCCTGCAGAAGAAGCAGAAGAGAAGGCAGAAGAAGAGGTTGGAGCAGAGAAGGTTGAGTAATTAAAACCTGAATACATATTATTGGGTGTAATATGAAAAAAGTGAATGGAGGGTGGTTTGAGAAATTTGGTAACTTTAAATTGTAGAGAGTTTTGTTTTTGTAATATGAAAAGTGGTTGATTGAATGGGGATTGAAATGGAGTGTAGTAAGCTATAAAAGGAGTATAGGGATTGGGGAACTTTGTATTTCTGTTTCTTGGATGTCTGTTCACAGTTGCAAATTTTTTCTTTTTTGCTAGTTTGTTTATTATAATAACTTGCAAGTTATAATATCTATATATATATATATACTTGTTTCTTTTTTTTAAAAAATAATATATTATTATTTCAATATTGTGATTTTGTTGATTCTCTTCTCCTAAACATATAATGATCAATAAATATATATATAGAGAA

Coding sequence (CDS)

GCCACTCCATTCTTTCTCTGTCCTATAAAATCCACTCTGCTTCGTCATTCTTCCATCCCATCCTTTCTTTCTCTTCTTCAATTCCTTCTCCTTTTCCACAAGGATTTAGCAATGGCTACTGCTGAGGTTGTAACACCGGAGACAGCTCTCCCAGAGGAAGCAACAGAGGTGGTGGAGGTGGAGGTACCACCGCCCAAGGTTGAGGAAGAAGAAGCTCCGCCTCCGGTGGAAGAAGATCCGCCAGCGGAGGAGGTGGCAAAAGAAGAAGACGTCACGGATCCACCAGCAGTGGAAGAGGCAGAAACTCCGGTTGAAGTTGAAACCAAGGAAGTAGTAGTAGAAGAAGAGGCAAAGGAAGAGAAGAATGAAGAAGAAGAAGTAGTAGAAGAAGAGGAAAAGGAAGAGAATAAAACAGAAGAGGCAGCTGAGGTTGTGGTGGAGGAAGAGACGAAAGCACCGGTGGAGGAGGCAGAGGAGAAGGCCGTGGAAGTGAAGCCTGCAGAAGAAGCAGAAGAGAAGGCAGAAGAAGAGGTTGGAGCAGAGAAGGTTGAGTAA

Protein sequence

ATPFFLCPIKSTLLRHSSIPSFLSLLQFLLLFHKDLAMATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAVEEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEAEEKAVEVKPAEEAEEKAEEEVGAEKVE
Homology
BLAST of Cucsat.G18274 vs. NCBI nr
Match: XP_004140479.1 (cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothetical protein Csa_004785 [Cucumis sativus])

HSP 1 Score: 220 bits (560), Expect = 2.25e-70
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 157
           EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 158 EEKAVEVKPAEEAEEKAEEEVGAEKVE 184
           EEKAVEVKPAEEAEEKAEEEVGAEKVE
Sbjct: 121 EEKAVEVKPAEEAEEKAEEEVGAEKVE 147

BLAST of Cucsat.G18274 vs. NCBI nr
Match: XP_008455963.1 (PREDICTED: patellin-1-like [Cucumis melo])

HSP 1 Score: 164 bits (414), Expect = 4.46e-48
Identity = 128/156 (82.05%), Postives = 132/156 (84.62%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVTP+TA+PEEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKA----- 157
           EE ETPVE ETKEVVVEEE+KEEKNEEE VVEEEEKEE KTEEAAE  V EETKA     
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEE-VVEEEEKEEKKTEEAAEGAVLEETKASEAET 120

Query: 158 PVEEAEE-KAVEV---KPAEEAEEKAEEEVGAEKVE 184
           PVEE EE KAVEV   KP EE EEK EEEV AEK E
Sbjct: 121 PVEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of Cucsat.G18274 vs. NCBI nr
Match: KAA0053292.1 (patellin-1-like [Cucumis melo var. makuwa])

HSP 1 Score: 164 bits (414), Expect = 3.71e-46
Identity = 128/156 (82.05%), Postives = 132/156 (84.62%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVTP+TA+PEEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKA----- 157
           EE ETPVE ETKEVVVEEE+KEEKNEEE VVEEEEKEE KTEEAAE  V EETKA     
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEE-VVEEEEKEEKKTEEAAEGAVLEETKASEAET 120

Query: 158 PVEEAEE-KAVEV---KPAEEAEEKAEEEVGAEKVE 184
           PVEE EE KAVEV   KP EE EEK EEEV AEK E
Sbjct: 121 PVEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of Cucsat.G18274 vs. NCBI nr
Match: XP_038900947.1 (cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benincasa hispida])

HSP 1 Score: 134 bits (336), Expect = 1.83e-36
Identity = 107/152 (70.39%), Postives = 110/152 (72.37%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVV PET LPEEATEV  VEVPPPKVEEEEAPPP   DPPAEEVAKEE+ TDPPA 
Sbjct: 1   MATAEVVPPETVLPEEATEV--VEVPPPKVEEEEAPPPAAVDPPAEEVAKEEEATDPPAA 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETK-----A 157
           EE ETPVEVETKEVVVEEE KEEK EEEE          K EEA E VVEEE+K     A
Sbjct: 61  EETETPVEVETKEVVVEEEPKEEKKEEEE----------KEEEAGEAVVEEESKPAEAEA 120

Query: 158 PVEEAEEKAVEVKPAEEAEEKAEEEVGAEKVE 184
           P EE   + VE KP EE EEK EEE  AEK E
Sbjct: 121 PAEEEAVEVVEEKPVEETEEKPEEEPAAEKAE 140

BLAST of Cucsat.G18274 vs. NCBI nr
Match: KAG6604898.1 (hypothetical protein SDJN03_02215, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 69.7 bits (169), Expect = 2.66e-11
Identity = 95/175 (54.29%), Postives = 103/175 (58.86%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVT E AL EE TE   V+VPP KVEEE AP  V  DPPAEE+AKEE      A 
Sbjct: 1   MATAEVVTQEAALQEEVTE---VQVPPLKVEEE-APAAV--DPPAEELAKEE------AA 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 157
           E AE PVEVETKEVV EEE +EE+ +EE V      EE K  EAAEV  EE+ +AP E  
Sbjct: 61  EVAEPPVEVETKEVVAEEEEEEEEAKEEVV------EEKKEVEAAEVEAEEKEEAPAESE 120

Query: 158 ------------------------AEEKAVEVKP--AEEAEEK-AEEEVGAEKVE 184
                                   AEE+AVEVK   AEEAEEK AEEE  AEK E
Sbjct: 121 PAVAAAAEEEEEEEEEAKPEAEPAAEEEAVEVKETAAEEAEEKPAEEEPAAEKAE 157

BLAST of Cucsat.G18274 vs. ExPASy TrEMBL
Match: A0A0A0KAS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1)

HSP 1 Score: 220 bits (560), Expect = 1.09e-70
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV
Sbjct: 1   MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 157
           EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA
Sbjct: 61  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEEA 120

Query: 158 EEKAVEVKPAEEAEEKAEEEVGAEKVE 184
           EEKAVEVKPAEEAEEKAEEEVGAEKVE
Sbjct: 121 EEKAVEVKPAEEAEEKAEEEVGAEKVE 147

BLAST of Cucsat.G18274 vs. ExPASy TrEMBL
Match: A0A1S3C239 (patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 2.16e-48
Identity = 128/156 (82.05%), Postives = 132/156 (84.62%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVTP+TA+PEEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKA----- 157
           EE ETPVE ETKEVVVEEE+KEEKNEEE VVEEEEKEE KTEEAAE  V EETKA     
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEE-VVEEEEKEEKKTEEAAEGAVLEETKASEAET 120

Query: 158 PVEEAEE-KAVEV---KPAEEAEEKAEEEVGAEKVE 184
           PVEE EE KAVEV   KP EE EEK EEEV AEK E
Sbjct: 121 PVEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of Cucsat.G18274 vs. ExPASy TrEMBL
Match: A0A5A7UC23 (Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G001030 PE=4 SV=1)

HSP 1 Score: 164 bits (414), Expect = 1.79e-46
Identity = 128/156 (82.05%), Postives = 132/156 (84.62%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVTP+TA+PEEATEVVEVEVP PKVEEEEAPPPVE DPPAEEVAKEEDVTDPPA+
Sbjct: 1   MATAEVVTPDTAVPEEATEVVEVEVPAPKVEEEEAPPPVEADPPAEEVAKEEDVTDPPAL 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKA----- 157
           EE ETPVE ETKEVVVEEE+KEEKNEEE VVEEEEKEE KTEEAAE  V EETKA     
Sbjct: 61  EETETPVEFETKEVVVEEESKEEKNEEE-VVEEEEKEEKKTEEAAEGAVLEETKASEAET 120

Query: 158 PVEEAEE-KAVEV---KPAEEAEEKAEEEVGAEKVE 184
           PVEE EE KAVEV   KP EE EEK EEEV AEK E
Sbjct: 121 PVEEEEEEKAVEVVEEKPVEETEEKPEEEVEAEKAE 155

BLAST of Cucsat.G18274 vs. ExPASy TrEMBL
Match: A0A6J1I4V1 (fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC111469887 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.62e-11
Identity = 94/172 (54.65%), Postives = 99/172 (57.56%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVT E AL EE TE   VEVPP KVEEE    P   DPPAEEVAKEE      A 
Sbjct: 1   MATAEVVTQEPALQEEVTE---VEVPPLKVEEEA---PAAADPPAEEVAKEE------AA 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 157
           E AE PVEVETKEVV +EE +E K   EEVVEE      K  EAAEV  EE+ +AP E  
Sbjct: 61  EVAEPPVEVETKEVVAKEEEEEAK---EEVVEE-----KKEVEAAEVEAEEKEEAPAESE 120

Query: 158 ---------------------AEEKAVEVKP--AEEAEEK-AEEEVGAEKVE 184
                                AEE+A EVK   AEEAEEK AEEE  AEK E
Sbjct: 121 PAVAEEEEEEEEEAKPEAEPAAEEEAAEVKETGAEEAEEKPAEEEPAAEKAE 152

BLAST of Cucsat.G18274 vs. ExPASy TrEMBL
Match: A0A6J1G7J6 (enolase-phosphatase E1-like OS=Cucurbita moschata OX=3662 GN=LOC111451476 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.85e-09
Identity = 91/170 (53.53%), Postives = 95/170 (55.88%), Query Frame = 0

Query: 38  MATAEVVTPETALPEEATEVVEVEVPPPKVEEEEAPPPVEEDPPAEEVAKEEDVTDPPAV 97
           MATAEVVT E AL EE TE   VEVPP KVEEE          PAEEVAKEE      A 
Sbjct: 1   MATAEVVTQEAALQEEVTE---VEVPPLKVEEEA---------PAEEVAKEE------AA 60

Query: 98  EEAETPVEVETKEVVVEEEAKEEKNEEEEVVEEEEKEENKTEEAAEVVVEEETKAPVEE- 157
           E AE PV VETKEVV EEE +EE  EE  VVEE      K  EAAEV  EE+ +A  E  
Sbjct: 61  EVAEPPVAVETKEVVAEEEEEEEAKEE--VVEE-----KKEVEAAEVEAEEKEEAAAESE 120

Query: 158 -------------------AEEKAVEVKP--AEEAEEK-AEEEVGAEKVE 184
                              AEE+AVEVK   AEEAEEK AEEE  AEK E
Sbjct: 121 PAVAAEEEEEEAKPEAEPAAEEEAVEVKETAAEEAEEKPAEEEQAAEKAE 145

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_004140479.12.25e-70100.00cilia- and flagella-associated protein 251 [Cucumis sativus] >KGN46583.1 hypothe... [more]
XP_008455963.14.46e-4882.05PREDICTED: patellin-1-like [Cucumis melo][more]
KAA0053292.13.71e-4682.05patellin-1-like [Cucumis melo var. makuwa][more]
XP_038900947.11.83e-3670.39cytochrome c1-like [Benincasa hispida] >XP_038900949.1 cytochrome c1-like [Benin... [more]
KAG6604898.12.66e-1154.29hypothetical protein SDJN03_02215, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
A0A0A0KAS31.09e-70100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G109780 PE=4 SV=1[more]
A0A1S3C2392.16e-4882.05patellin-1-like OS=Cucumis melo OX=3656 GN=LOC103496027 PE=4 SV=1[more]
A0A5A7UC231.79e-4682.05Patellin-1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G0010... [more]
A0A6J1I4V11.62e-1154.65fibrous sheath CABYR-binding protein-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1G7J65.85e-0953.53enolase-phosphatase E1-like OS=Cucurbita moschata OX=3662 GN=LOC111451476 PE=4 S... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 117..137
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 138..184
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G18274.T1Cucsat.G18274.T1mRNA