Cucsat.G18074 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18074
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RGG repeats nuclear RNA binding protein A-like
Location	ctg3345: 5002005 .. 5003780 (+)
RNA-Seq Expression	Cucsat.G18074
Synteny	Cucsat.G18074

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAATACAGTATCTTAAAGTTTGAGTGATAGATATCTAAATATGAAATGGAATGTAATATATTATAGATAATATTTGAAAACATAAATAAACAAATAAATGAAGCTATAAGTTATAGTATATTGTTGCGATACCGCACGAGGGAGGATATATAGAAACGGTCGAACAACGCAAAATAACTATATGCGTTTATCTATCGAGTTGGCTCTTCGTTTGCACTTACACTCACTCGGCCATTGCGGCTAGGGTTTTCTCCCAGTTTCTACCGCTTTTCGATTCGATCTTTTTTTCTTTTCTCCTCTCTCTTTTTACAGATATTCTTCATAGATTCATCATGGAGTTCTTGTTGTTAAGGTAGGATTTCGTGGTCGCCTTTCACGGAGTGCAATTTCTTTTCAACTTTTCCGGTATTGGTTTTAATATAGTTCGGAAATGGCGACCACAAATCCATTTGATTTGTTGGGTGATGACGATGCTGAGGACCCATCGCAGCTAATGGCTGTCAAGCAGGCTGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCTAAACAACAGGCGGCTGCGGCAGCTAAATTGAGTAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCGCCTGCTCAGGCTGGTTAGTTTCTTTCTCTTTTTTTTTTTTTTTTTTTTTTTGAATTGGAGGTTATTGATTGTGTAAATATCAGAGTTCGATTTTGATGTATAGTTTTCTTCCTTTTGTTTTCCTGTCTAGGTTGATTGGTTTTGCATTCCGTGATTTTTGTTGTTGTTTTGTTAAAGTTTTTTGTCTGCTTGTTTGCATGGTTACATTGTTTGCGCCTATGGGAGAGTGCGAAGTCTTTCTTTGTGATGTTAGATATATACATACACGTAGGAATGAGTGATTTTTAATTCAGTCAAAATTTTGTAGGCTATATAATTACTTTTTGCGATACCCGGCTGGGATTTATTGTGTATTCCTACAATCCAAGGCTCTGCATTCCAAATTTATTTGGAATTCAGATAATATTCAATGGTTTGTATGTTTGGAACATAAATGGAATTGAGTTATCAATATTTTTTAAAATTTTTTTTGGAAGAAATTCGAGTGTCAGTCAGCAATGTTGTGATTTTATAACGTACTAGGTTATGAATTTTGTCTGTACATTGTTTAGATAGTATTTTCTTTATTCTTATTATGCCATTTTTCCTTTGTGTGTGGCAATTGAAAAAATTTGAATATTTTGATAACTTATGTACAAGTCTTTTAAAAAAGAACCTAGCTTTCGTTGAGAAATATGAAGAATGTATTAGGGCATACCAAAAACCCTGCAAAAAGAGTTCCCAGTCCTAATAGTGAGAAAGGACCCAATCGAAGAATGAGACCAAGTTAGTAATCACAAAAGCCTGATTAACGGATGTTCATAATGAAGAGTTATAACCAACTCCCTATTGTTCCTTTCCAACCAAGTACTTCATAAAATGGCAAAAATAGCTAGCCAGCTACTGCCACATAACTATTCATTTATCACGATTCACAACAAGGAGGGGGGGTTCATAAGCATTTCCTTGGTCACCCCAAACATGAGCCAAATCAAAGCAATTTTTTTTGAGAAAGAACTGTTCAACAGGGGCAATCCAACATGAGATGGTTGAGGTTCTCCTCTAACTTCCGGCAAAGAATGCCATTAGTCCATTACAGTTGCAACAGTAAGATCAAGATGAGTGCCTTGGTAGATGGTCCTGCATGCTCACTATTCCAAGCTATCATGGAGAACTGCTAGACATTACTTTCACTTTTTCTTTTCCTAAAAAAAAAATGAAAAAAGGAATAGTGAGTGGAAATGGGTTTTCCCCCCTCCCAAGTATCCTAAAATATCAAGTAGACTAAATAGTTTGAACTGGGATAACAATTAGCAAAGGAAAGCTCGAAGCAATAACAGTCTGGTGGTGTTCGCTAGAATATTTAAAACTACAACTTGAACTCCACCTAGAAGGCTATGGTCCATAGTTGCTCAGAAGGCTATGCATGTGTTACAGACTTTCAGCTCCATGAAAAAATGTCAACCATTTTGCTAACGAGTCTCATTATGCAAACTCAGGTTGCCAATGCCTAAACCCTCTAGATCAACTAATTTTGACACAACCTCCCCCACCCTTATTTACTCCTTCCCACAAGAGATGTTTCTTATGAATCTTTCATTTTTCTTACTGATTGAGACAAGCATTCTAAGCATGCAAGGAAGGTAGATTGGGATCCTACTCAACACTAATTGGATTGATGTCAGCTTTCCCCCTAAGAAAGGCATTTCTCTGTGGTTTTTGAATTTTCAGTAGGTCCCAAGAAGGCAAACTATTTATTTTGATTACAATTACCCCGGCCCCAAGGGAAGTCCAAGGTGGGAACAGGGAAGCTTACTCACCTCACTTTTGAGCAAAATTAGACCCAAGAGGACAAACTTAGAAGGCTCACAATTTAGATCAATGATGGAGGTTTTGCACTCTATTGATTTTAAGGCTTGAGATATGTTCAAAGGACAAGAAACCACTAAGATTCATAAAGGAACTATGCAATTGCTATATATTATATATATATATTGACGATATCCAATTGGTATAATTTATGCACAAGTTCAATTGAAATGTTTTGGTTGGCTCTTGATATGTGTTCTTTTGTATTATTTCTTGATGAAAGGTTCTTGTTTTCAATATTTACCTTGAAGAGGAATTGATATATTTGATTTCTTCGTAGATTTCTTGATGGAAATTTCCATTTTTTTCTAAAGAAGTCATGTTTTGGAGGAAAAAATTGTAGGACTGTGTGAACAAATATTTGCATGTATACCCAAATCGTGGGCTGTTGTAAAGAACTGGTTTGTCTCTGTATTGTATTTTTAAATATTCCTGGTTCTTAATATAGAACTTGGTAGTCTGCAGTCAATTTTTTATTCCATTTTGAACATAGCTTTGTCTTGTATCATATTGCCCATATTACGCTATTGTTTATCAACAGAGTCTTCCTTATTCTATTGGGTTCTTATGAGTGTCTTGATTCCTGTCCAATTGTTATCAATTATCCATTGGGTATCTGAAAGGATTTTTTTTTAATTATCTTTTTTAATACTTTGAGTAGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTAGTAGTGGCCGTGGTGGACGTGGATATGGACGAGGACGTGGCAGTGGTGGTTTTAATCGCGAGTCTCCCAACAATGAGTACTCATTTAGTAGTAACCCTGAAGATGGAGAAACTGGAAGGACGACAGAAAAACGTGGTGGATATGGTGGACCTCGTGGTCGCGGTGGCCGTCGTGGTGGTTTTTATAATGGAGATACTGCTGATGGTGAACGCCCTCGTGGTGCATTTGAACGGCACAGCGGAACTGGCCGTGGGTGAGTTCTTTTTTCAAGAAAACATCAGCTTACGCTATGCATCTATATCTTCTACTCTGTTTTGACATCTTCAGCCTGTTTTATACCCAGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGGAACTGGGGAAGGTCGGCTGAGGAATTCCCTGAGTAAGTACATCCCTATGTTTTGGATGTTTCTGTATGTGTGGCCTGGTTCTTTTCTTTTCTCCTATAATGTTTGGCTGGGGTGGGGAAGGCTGGGAGGCAGATGTTACTGGAAGTTGTATGCATGTTCGAACTCTTGTATGCTAAGAGGCTAGCTTGTTTTGCATACAGGGTTGCTGAGGAAGCTAATGAATCTCAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACACAGAGAACCCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGTTTGTGTTGTCAGGTTTTTTTGGTAGACTTCACTTAAACTGCAGCCTACCATTTCACTTGCCATTTGTTTTTCTTGTTAACTGAAAATTAATTTGTAGTTTTGCTTGCTTATCAAACAAATTGAATGGGCATTGATAGCCGGAGTAGTAGTAATACACTGGTGGGTTAGTATTATGAGCTTCGCTCTATGTTCAACATGATTTTGAATCTGCCGTGTACTGTTTCTTTTTCCTTGATACAGGAAATGACTCTGGAGGAGTACGAAAAATTACTGGATGAGAAAAGGAAGTCTCTTTTGGCACTGAAAACTGAAGAGAGGAAAGTGGATCCCAAAGAATTTGCATCCTTGCAACAGCTATCAAGCAAAAAGGAAAACCAGGACATCTTTATTAAATTGGTACATCTATTTAGTCTTCCTTTGGAGTTGCAATTATATATTGATATTGTTCTGATGGATGAACATTGGCTCCTTGATATATTGGTATGGTCTTGGACATGGCCGCTGAATCTCATTTCACCATTTGTAGGGATCTGACAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAAAGAACTAAGAAGGTATTTCCTCTTGTGTATTACATGATTTCCTGTCCATTACATAGGTTTTTAAAGTTTAGTTCTCAAACGAAGAAAAATGTTCTATTGTGATGCCTTTTGCTGCTTCAATTCGTCACCAATTGAATGACGAAATCGAAGTGTGCATACTTCGTCTAATTTACTTGTGTTCTGTGGATACACTCTCCTGTTTGGATCAAAGCTTAAAAGAGAGGGAGTTTTGGCCGTCAGTTCAACATCCTAACTCAGATAACTCTAGGTTTTTCAATCGTGTCTTTGAGTTCTAAGGAGAATGGGTGTTGGGTCCTTCAAGGAAACTTGGTTTTGGCGATTGGCTTAGGAAGCCAAAATCATGCTCCTAAAATGCCTGAAAAATATACGAGCTACAACCAAGAAACAAGTTCGATTATGAACTGAAGGTTTTAAAACAACACTTCCGTATTGTAACCTAAATTCTGCTCATACTCAAATAATTTAATGATCAACGAAGTACTGATTTTTCTGTTGTTTTCTTTCTTCTATTTTCATAGTCCGTGAGTATCAATGAGTTCTTGAAGCCAGCCGAAGGAGAGAAACACTACACTCCAGGTGGTCGGGGTAGAGGCCGGGGCCGTGGTTCAAGGGGAGGAGGTTACGTTGGCAGCTCAATGAGCAGCAACGTTGCAGCCCCATCTATTGAGGATCCGGGGCAGTTCCCAACCTTAGGTGCAAAATGAATATTCTGAATAAATTGCACTCAAAACTGTGTATACGGTTTTGGGGGCTGTCTCTTTGATCTGGGGGAATGGCAAGAAGTTGAGTAGAATAATTAGAGTTTTTCTTTCCTAATGTATTAAAAGAAAAAGAGGTTAAAAAGCTTAATTTGTTTGAATGTAAATTGTCAAAGCCATGTATTTTTCCTTTGTCACACTTTTTCGTTATGTGTTTTTTCCCAACTGACTTGCCAGATCAAAATATTTATGACATTTTAGCTTATATACCATAATTCTCTATTTCCAAAATTT

Coding sequence (CDS)

ATGGCGACCACAAATCCATTTGATTTGTTGGGTGATGACGATGCTGAGGACCCATCGCAGCTAATGGCTGTCAAGCAGGCTGCGGCGGCGCCTAAGAAAGGTTCTGATCATCCTCAGGCTAAACAACAGGCGGCTGCGGCAGCTAAATTGAGTAAACCTGCTAATCTTCCTTCCAAGCCTCTTCCGCCTGCTCAGGCTGTAAGGGAAGCAAAGAATGAAGGTGGTCGTGGAGGTCGTAGTAGTGGCCGTGGTGGACGTGGATATGGACGAGGACGTGGCAGTGGTGGTTTTAATCGCGAGTCTCCCAACAATGAGTACTCATTTAGTAGTAACCCTGAAGATGGAGAAACTGGAAGGACGACAGAAAAACGTGGTGGATATGGTGGACCTCGTGGTCGCGGTGGCCGTCGTGGTGGTTTTTATAATGGAGATACTGCTGATGGTGAACGCCCTCGTGGTGCATTTGAACGGCACAGCGGAACTGGCCGTGGAAATGAATTCAAGCGTGAAGGGTCTGGGCGTGGGAACTGGGGAAGGTCGGCTGAGGAATTCCCTGAGGTTGCTGAGGAAGCTAATGAATCTCAGAAGTTAGGTGATGAGAAGCCCGTTCATGAGGATGATACTGCAGGTGTCAACACAGAGAACCCTGCAAAAGAATCAGAGGAAAAAGAACCAGAAGACAAGGAAATGACTCTGGAGGAGTACGAAAAATTACTGGATGAGAAAAGGAAGTCTCTTTTGGCACTGAAAACTGAAGAGAGGAAAGTGGATCCCAAAGAATTTGCATCCTTGCAACAGCTATCAAGCAAAAAGGAAAACCAGGACATCTTTATTAAATTGGGATCTGACAAGGATAAGCGAAAAGAAACTGCAGATAAGGAGGAAAGAACTAAGAAGGTATTTCCTCTTGTGTATTACATGATTTCCTGTCCATTACATAGGTTTTTAAAGTTTAGTTCTCAAACGAAGAAAAATGTTCTATTGTGA

Protein sequence

MATTNPFDLLGDDDAEDPSQLMAVKQAAAAPKKGSDHPQAKQQAAAAAKLSKPANLPSKPLPPAQAVREAKNEGGRGGRSSGRGGRGYGRGRGSGGFNRESPNNEYSFSSNPEDGETGRTTEKRGGYGGPRGRGGRRGGFYNGDTADGERPRGAFERHSGTGRGNEFKREGSGRGNWGRSAEEFPEVAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKVFPLVYYMISCPLHRFLKFSSQTKKNVLL

Homology

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BLAST of Cucsat.G18074 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.9e-38
Identity = 106/171 (61.99%), Postives = 125/171 (73.10%), Query Frame = 0


Query: 26  ESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSLLALKTE 85
           E++K   EKP  +D  A  N E+     EEKEPEDKEMTL+EYEK+L+EK+K+L +L T 
Sbjct: 191 ETEKDVGEKPAVDDVAADANKEDTV--VEEKEPEDKEMTLDEYEKILEEKKKALQSLTTS 250

Query: 86  ERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEFLKPAEG 145
           ERKVD K F S+QQLS+KK N +IFIKLGSDKDKRK+  DKEE+ KK+VSINEFLKPAEG
Sbjct: 251 ERKVDTKVFESMQQLSNKKSNDEIFIKLGSDKDKRKD--DKEEKAKKAVSINEFLKPAEG 310

Query: 146 EKHYTPGGRGRGRGRGSRGGGYVGSSMSS---NVAAPSIEDPGQFPTLGAK 194
             +Y  GGRG GRGRG RG G V S  S    N AAP+I D  QFP+LG K
Sbjct: 311 GNYYR-GGRG-GRGRGGRGRGGVSSGESGGYRNEAAPAIGDAAQFPSLGGK 355

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BLAST of Cucsat.G18074 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.8e-35
Identity = 100/172 (58.14%), Postives = 127/172 (73.84%), Query Frame = 0


Query: 25  NESQKLGD-EKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSLLALK 84
           N+ +K+ + EK   +++    N ++ A E EEKEPE+KEMTLEEYEKL++EKRK+LLALK
Sbjct: 133 NDGEKIVEAEKEAGQEEAEDTNKDSTAAEPEEKEPEEKEMTLEEYEKLMEEKRKALLALK 192

Query: 85  TEERKVD-PKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEFLKP 144
            EERKV+  KE  S+Q LS+KK + +IFIKLGS+K+KRKE  +K  +T+   SINEFLKP
Sbjct: 193 PEERKVNLDKELESMQLLSNKKNDDEIFIKLGSEKEKRKEAVEKARKTQ---SINEFLKP 252

Query: 145 AEGEKHYTPGGRGRGRGRGSRG-GGYVGSSMSSNVAAPSIEDPGQFPTLGAK 194
           AEGE +   GGRGRG GRG  G GG VG + S   +APSIED GQFP+L AK
Sbjct: 253 AEGENYSRRGGRGRGPGRGRGGFGGGVGGNKS--FSAPSIEDVGQFPSLVAK 299

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BLAST of Cucsat.G18074 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 9.7e-29
Identity = 96/191 (50.26%), Postives = 122/191 (63.87%), Query Frame = 0


Query: 20  VAEEANE--SQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRK 79
           V EE+     + L  EK   E +      E PA+++EEK PEDKEMTLEEYEK+L+EK+K
Sbjct: 172 VTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEEK-PEDKEMTLEEYEKVLEEKKK 231

Query: 80  SLLALKTEERKVDPKEFASLQQLSSKKENQD-IFIKLGSDKDKRKETADKEERTKKSVSI 139
           +L A K EERKVD K F ++QQLSSKK N D +FIKLG++KDKR    ++EE+T+KS+SI
Sbjct: 232 ALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLGTEKDKR--ITEREEKTRKSLSI 291

Query: 140 NEFLKPAEGEKHYTP-----GGR-GRG--------RGRGSRGGG--YVGSSMSSNVAAPS 192
           NEFLKPA+G+ +Y P     GGR GRG         GR  R GG        ++    P+
Sbjct: 292 NEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGRNLREGGRNQRDGGAAAQAPTPA 351

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BLAST of Cucsat.G18074 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.2e-28
Identity = 90/164 (54.88%), Postives = 114/164 (69.51%), Query Frame = 0


Query: 33  EKPVHEDDTAGVNTENPAKESEEKEPED---KEMTLEEYEKLLDEKRKSLLALKTEERKV 92
           EK   ED+T     E  A+E  +KE E+   +EMTLEEYEK+L+EK+K+L A K EERKV
Sbjct: 198 EKQGGEDETPEAKKELTAEEKAQKEAEEAEAREMTLEEYEKILEEKKKALQATKVEERKV 257

Query: 93  DPKEFASLQQLSSKKE-NQDIFIKLGSDKDKRKETADKEERTKKSVSINEFLKPAEGEKH 152
           D K F S+QQLS+KK  +++IFIKLGSDK+KRK   D  E+ KKS+SINEFLKPA+G+++
Sbjct: 258 DTKVFESMQQLSNKKNTDEEIFIKLGSDKEKRK---DATEKAKKSLSINEFLKPADGKRY 317

Query: 153 YTPGGRGRGR-GRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLG 192
              GG  RGR GRG RG G      +   AAP+I D  QFP+LG
Sbjct: 318 NGRGGGSRGRGGRGGRGEG-GNQRYAKEAAAPAIGDTAQFPSLG 357

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BLAST of Cucsat.G18074 vs. NCBI nr
Match: XP_004150996.1 (RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46514.1 hypothetical protein Csa_005350 [Cucumis sativus])

HSP 1 Score: 319 bits (818), Expect = 2.25e-106
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 20  VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 79
           VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL
Sbjct: 187 VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 246

Query: 80  LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 139
           LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF
Sbjct: 247 LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 306

Query: 140 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 307 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 360

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BLAST of Cucsat.G18074 vs. NCBI nr
Match: KAA0039786.1 (H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa] >TYK24711.1 H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 305 bits (780), Expect = 1.41e-102
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 20  VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 79
           VAEEANESQKLGDEKPVHED TAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+EKRKSL
Sbjct: 51  VAEEANESQKLGDEKPVHEDGTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRKSL 110

Query: 80  LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 139
           LALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKE ADKEERTKKSVSINEF
Sbjct: 111 LALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEERTKKSVSINEF 170

Query: 140 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           LKPA+GE+HYTPGGRGRGRGRGSRGGGYV SSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 171 LKPADGERHYTPGGRGRGRGRGSRGGGYVSSSMSSNVAAPSIEDPGQFPTLGAK 224

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BLAST of Cucsat.G18074 vs. NCBI nr
Match: XP_008459800.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo])

HSP 1 Score: 305 bits (780), Expect = 1.49e-100
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 20  VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 79
           VAEEANESQKLGDEKPVHED TAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+EKRKSL
Sbjct: 191 VAEEANESQKLGDEKPVHEDGTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRKSL 250

Query: 80  LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 139
           LALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKE ADKEERTKKSVSINEF
Sbjct: 251 LALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEERTKKSVSINEF 310

Query: 140 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           LKPA+GE+HYTPGGRGRGRGRGSRGGGYV SSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 311 LKPADGERHYTPGGRGRGRGRGSRGGGYVSSSMSSNVAAPSIEDPGQFPTLGAK 364

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BLAST of Cucsat.G18074 vs. NCBI nr
Match: XP_038875941.1 (RGG repeats nuclear RNA binding protein A-like [Benincasa hispida])

HSP 1 Score: 285 bits (730), Expect = 5.29e-93
Identity = 160/175 (91.43%), Postives = 166/175 (94.86%), Query Frame = 0


Query: 20  VAEEANESQK-LGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKS 79
           VAE  NES+K LGDEKPVHE DTAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+EKRK+
Sbjct: 189 VAEGVNESEKKLGDEKPVHEVDTAGVNTENSAKESEEKEPEDKEMTLEEYEKLLEEKRKT 248

Query: 80  LLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINE 139
           LLALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKETADKEERTKKS+SINE
Sbjct: 249 LLALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKETADKEERTKKSLSINE 308

Query: 140 FLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           FLKPAEGE+HYTPGGRGRGRGRG RGG YVGSS SSNV APSIEDPGQFPTLGAK
Sbjct: 309 FLKPAEGERHYTPGGRGRGRGRGGRGG-YVGSSASSNVPAPSIEDPGQFPTLGAK 362

[Close]

BLAST of Cucsat.G18074 vs. NCBI nr
Match: XP_023520985.1 (RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 263 bits (672), Expect = 2.91e-84
Identity = 149/179 (83.24%), Postives = 163/179 (91.06%), Query Frame = 0


Query: 16  FAYRVAEEANESQK-LGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDE 75
           FA    E  NE +K +GDEKPV E+DT+GVNTENPAKE EE EPEDKEMTLEEYEKLL++
Sbjct: 183 FAEVPEEAVNEPEKNVGDEKPVQEEDTSGVNTENPAKEPEETEPEDKEMTLEEYEKLLED 242

Query: 76  KRKSLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSV 135
           KRK+L+ALKTEERKVDPKEFAS+QQLSSKKEN DIFIKLGS+KDKRKE ADKEERTKKS+
Sbjct: 243 KRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKKSL 302

Query: 136 SINEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           SINEFL+PAEGE+HYTPGGRGRGRGRGSRGG Y GSS+S NVAAPSIEDPGQFPTLGAK
Sbjct: 303 SINEFLRPAEGERHYTPGGRGRGRGRGSRGG-YGGSSIS-NVAAPSIEDPGQFPTLGAK 359

[Close]

BLAST of Cucsat.G18074 vs. ExPASy TrEMBL
Match: A0A0A0KCI2 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G105680 PE=4 SV=1)

HSP 1 Score: 319 bits (818), Expect = 1.09e-106
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0


Query: 20  VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 79
           VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL
Sbjct: 187 VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 246

Query: 80  LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 139
           LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF
Sbjct: 247 LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 306

Query: 140 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 307 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 360

[Close]

BLAST of Cucsat.G18074 vs. ExPASy TrEMBL
Match: A0A5D3DM82 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002690 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 6.81e-103
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 20  VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 79
           VAEEANESQKLGDEKPVHED TAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+EKRKSL
Sbjct: 51  VAEEANESQKLGDEKPVHEDGTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRKSL 110

Query: 80  LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 139
           LALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKE ADKEERTKKSVSINEF
Sbjct: 111 LALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEERTKKSVSINEF 170

Query: 140 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           LKPA+GE+HYTPGGRGRGRGRGSRGGGYV SSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 171 LKPADGERHYTPGGRGRGRGRGSRGGGYVSSSMSSNVAAPSIEDPGQFPTLGAK 224

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BLAST of Cucsat.G18074 vs. ExPASy TrEMBL
Match: A0A1S3CC85 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498822 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 7.21e-101
Identity = 166/174 (95.40%), Postives = 170/174 (97.70%), Query Frame = 0


Query: 20  VAEEANESQKLGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRKSL 79
           VAEEANESQKLGDEKPVHED TAGVNTEN AKESEEKEPEDKEMTLEEYEKLL+EKRKSL
Sbjct: 191 VAEEANESQKLGDEKPVHEDGTAGVNTENTAKESEEKEPEDKEMTLEEYEKLLEEKRKSL 250

Query: 80  LALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSINEF 139
           LALKTEERKVDPKEFASLQQLSSKKENQD+FIKLGSDKDKRKE ADKEERTKKSVSINEF
Sbjct: 251 LALKTEERKVDPKEFASLQQLSSKKENQDVFIKLGSDKDKRKEIADKEERTKKSVSINEF 310

Query: 140 LKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           LKPA+GE+HYTPGGRGRGRGRGSRGGGYV SSMSSNVAAPSIEDPGQFPTLGAK
Sbjct: 311 LKPADGERHYTPGGRGRGRGRGSRGGGYVSSSMSSNVAAPSIEDPGQFPTLGAK 364

[Close]

BLAST of Cucsat.G18074 vs. ExPASy TrEMBL
Match: A0A6J1EYL1 (RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 263 bits (672), Expect = 1.41e-84
Identity = 150/176 (85.23%), Postives = 165/176 (93.75%), Query Frame = 0


Query: 20  VAEEA-NESQK-LGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRK 79
           VAEEA NE +K +GDEKPV E+DT+GVN+ENPAKE EE EPEDKEMTLEEYEKLL++KRK
Sbjct: 186 VAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEETEPEDKEMTLEEYEKLLEDKRK 245

Query: 80  SLLALKTEERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSIN 139
           +L+ALKTEERKVDPKEFAS+QQLSSKKEN DIFIKLGS+KDKRKE ADKEERTKKS+SIN
Sbjct: 246 ALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGSEKDKRKEIADKEERTKKSLSIN 305

Query: 140 EFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLGAK 193
           EFL+PAEGE+HYTPGGRGRGRGRGSRGG Y GSS+S NVAAPSIEDPGQFPTLGAK
Sbjct: 306 EFLRPAEGERHYTPGGRGRGRGRGSRGG-YGGSSIS-NVAAPSIEDPGQFPTLGAK 359

[Close]

BLAST of Cucsat.G18074 vs. ExPASy TrEMBL
Match: A0A6J1DV55 (RGG repeats nuclear RNA binding protein A-like OS=Momordica charantia OX=3673 GN=LOC111023798 PE=4 SV=1)

HSP 1 Score: 260 bits (665), Expect = 1.82e-83
Identity = 152/175 (86.86%), Postives = 162/175 (92.57%), Query Frame = 0


Query: 20  VAEEA-NESQK-LGDEKPVHEDDTAGVNTENPAKESEEKEPEDKEMTLEEYEKLLDEKRK 79
           VAEE  NE++K +GDEKPVHEDDTAGVNTEN AKESEEKEPEDKEMTLEEYEKL +EKRK
Sbjct: 188 VAEEVVNETEKKVGDEKPVHEDDTAGVNTENSAKESEEKEPEDKEMTLEEYEKLREEKRK 247

Query: 80  SLLALKT-EERKVDPKEFASLQQLSSKKENQDIFIKLGSDKDKRKETADKEERTKKSVSI 139
           +LLALKT EERKVD KEFAS+QQ+SSKK+N DIFIKLGSDKDKRKE  D E RTKKS+SI
Sbjct: 248 ALLALKTTEERKVDAKEFASMQQISSKKDNNDIFIKLGSDKDKRKEITDTE-RTKKSLSI 307

Query: 140 NEFLKPAEGEKHYTPGGRGRGRGRGSRGGGYVGSSMSSNVAAPSIEDPGQFPTLG 191
           NEFLKPAEGE+HYTPGGRGRGRGRGSRGG YVGSSMSSNVAAPSIEDPGQFPTLG
Sbjct: 308 NEFLKPAEGERHYTPGGRGRGRGRGSRGG-YVGSSMSSNVAAPSIEDPGQFPTLG 360

The following BLAST results are available for this feature:

BLAST of Cucsat.G18074 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	3.9e-38	61.99	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	1.8e-35	58.14	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
O23593	9.7e-29	50.26	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9LVT8	2.2e-28	54.88	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of Cucsat.G18074 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150996.1	2.25e-106	100.00	RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46514.1 hypothet...	[more]
KAA0039786.1	1.41e-102	95.40	H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa] >TYK24...	[more]
XP_008459800.1	1.49e-100	95.40	PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo]	[more]
XP_038875941.1	5.29e-93	91.43	RGG repeats nuclear RNA binding protein A-like [Benincasa hispida]	[more]
XP_023520985.1	2.91e-84	83.24	RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita pepo subsp....	[more]

BLAST of Cucsat.G18074 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCI2	1.09e-106	100.00	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G105...	[more]
A0A5D3DM82	6.81e-103	95.40	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3CC85	7.21e-101	95.40	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1EYL1	1.41e-84	85.23	RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1DV55	1.82e-83	86.86	RGG repeats nuclear RNA binding protein A-like OS=Momordica charantia OX=3673 GN...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 232..252
None	No IPR available	GENE3D	6.10.140.1040		coord: 149..260 e-value: 2.3E-9 score: 39.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 248..360
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 97..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 276..320
None	No IPR available	PANTHER	PTHR12299:SF53	RGG REPEATS NUCLEAR RNA BINDING PROTEIN A	coord: 1..360
IPR006861	Hyaluronan/mRNA-binding protein	SMART	SM01233	HABP4_PAI_RBP1_2	coord: 151..257 e-value: 4.3E-28 score: 109.3
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 151..256 e-value: 7.6E-24 score: 84.8
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..79 e-value: 8.1E-20 score: 71.4
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..360

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18074.T2	Cucsat.G18074.T2	mRNA
Cucsat.G18074.T1	Cucsat.G18074.T1	mRNA
Cucsat.G18074.T7	Cucsat.G18074.T7	mRNA
Cucsat.G18074.T5	Cucsat.G18074.T5	mRNA
Cucsat.G18074.T3	Cucsat.G18074.T3	mRNA
Cucsat.G18074.T4	Cucsat.G18074.T4	mRNA
Cucsat.G18074.T6	Cucsat.G18074.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding