Cucsat.G18073 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18073
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	RGG repeats nuclear RNA binding protein A-like
Location	ctg3345: 4994368 .. 4997546 (+)
RNA-Seq Expression	Cucsat.G18073
Synteny	Cucsat.G18073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCAAAATAGAAAAAAAATATACAAAAATTAACTAAGAGGAGTTGTCTAATATTATTGACAAAAATAAACCCAAATAAATAAAAGGAGGAATTTAGGTCAGTTGAGTTCTCTTTTGCTCTCACTCACATCAGTCACTTCCATTGCGGCTAGGGTTTTTTCTTTTCTTCCTCTTCCCCCTTTTTTCCCTTTTTTTTCTTAAATTTATTTCTACAAGATCTCTTTGTTCTTTTATTATATTCATGGAGGTCTTGCTTAGATAGGTTTTGTTGATCTCCTTTCTCGGAGTGGAATTAATTTTCCTTTTTTTTTGTTAGCTCTTTTTTTGGGGTTTTTGGTTTCCAGATTGTTTCCAAATGACCACCCTTAATCCTTTTGATTTGTTGGGGGATGATGATGCTGAGGACCCCTCTCAGCTAATTGCGGCTAAGGTGGCGGCGGTGGCCACGGCGCCGCTGTCTAAGAAAGCCCCTGCTCAGACCAAACCCCTTCCTTCTGGGGCCCAACTGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGGTAAGATTCTTCGTTGCTTAATTTTTGGTTTCGTTTTGAATATTTATGTTTTTCTTTTTTTAAAAAGTATCCCTTTGGTCGATCGATTTTACATTTTTCAGATAATGTTTATTCGTTTCGGTTTTAGGTGTTTGTTTTTCTTATTTAATTCTACGTAAGAGCGAAGGATGGTAATTGTTTTTAATTTGGTTGGAGTGTTGAAAATTTCCTCTTTTTTTTTTTCTCAAAAAAATTTGTGGGATGGAACTGTTGTCTTCGTTTTATTGTGTGTTTGGCAGTTGAATTTTGTTCGTAACTTAGATAATACCGAATGAGTTGTTTGTTTTGGTATTGTGATTGGAGGATTAACGTATTGAAGTATTGCTTTTGGCTGAAATCTGATGTCTGAAATGCAGTTGTGAATAAATAAATTTTATTTTAATGTTTCAAGGCTTAAATAAGATTTTGTTTTCTTACTATGATATGTTGTTTTTTCTTTACGTTGATTTTTAATAGTCATCTACTGATAGCAGTTGAACATTACCAAGTTGAATTTGTGATTGTTTATCGATTTGGGATCTTTTTTGGGAACTTGGAACTGTGCAAACAATTCTTCGTTATCATACCAGTAACATTTTTTTTGTCTTTCTTCGTCCTGTTAGATTATAATTTACCGACCTACTATTGTTTATCCTTCAAATTCTTGTGAGTGTCCACTGAAACGAATTATCCATTAAGTGATTAAGATAATCTTTTTCTTACTTTGTGTAGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGGGGATATGGGTATGGGCGAGGTCGCGAGGGTGGTGGGTTTAATCGAGACTCTACCAATAATGAGAACATTAATGCACCTGAAGATGGAGTGGGTGGTAAGACATCTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGAGGTGGTTTCAATGATGGAGAAGGTGCTGAAGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGTCGTGGGTAAGTGTCTATTGTCTGTTCTTTTAAATTTTATTGTGCACACTCCTGCTGTATATTCTACACTGTTTTGACGCTTTATTCCTGATTTTATGCCTAGAAATGAATTTAAACGAGAAGGGTCTGGTCGTGGAAATTGGGGAAGGTCAACCGACGAATTTGCTGAGTAAGTACATGTGTATACCTTCAATCTTCATGCATGTCTTTTTCCAGGTATTATGTGTAATTGTGCGTACATGAGCCTTCTTCTCAATCCTTCTCATAGAAGCTGCCAGGTTGGCTTGAAAGACAAATTTATATAGTCAGGCATTCCTTTCTCAATATGTGGAAGATGCTCTCAACCACATCGTATACGGGGAGCTTGGCTAACTTCATTTTTCTTTTCAGGGAGAGGGTTGCATTTTTATGCTCATGTTATTATCTCTTGTATGCTAATAAGATTGTTCTCTCCTTGACAACTAGTTATGCCTAAAATTTCTGTTTTATATTTAGGGTAGCAGGGGAAACCGTTAATGAAACTGAAAAGAATGTGGGTGACGAAAAGCCTATTCAAGAGGATGATACATCAGGTGTGAACACGGAGAACCCTGCTAAAGAACCACAGGAAACCGAACCAGAAGACAAGGTTAGTATCTTCAGATTTTAGTAAACTTCCCATAAATGTGGGACCTACTATCTCACTTGTTTTGATTTTCTTCTGGCTGAAAAGCGACTTGTAGTTTTGCTTGCATGTCAAGTTGAACAGGCTTTATTACTTCACTTCTAGTAGCATAAATTTGATACGTGTAGCAGTTGTAAATTTGAATGCGTATATCAATCTGATGGGCTTGGGTTGCGAAGTCTTTTGTACTGTTTGACTTGATTTTGAATCTAATGTACTCTTTTTTTTTCGATGCAGGAAATGACTCTGGAGGAGTATGAAAAGTTGCTTGAGGATAAAAGGAAGGCCCTTCTAGCTCTAAAAACTGAGGAGAGGAAGGTGGATCCTAAAGAATTTGCATCCATGCAACAACTTTCAAGCAAGAAGGACAACAATGACATATTTATTAAATTGGTACACCTACTTAACACTCTTTCGCTGTTGATATATCCCCTATGGGATCTGATGACCCTTGGCCTTGCATTAAATGAGGACTTGACAGTTTTATCTCATTTGTTACCCCACTTGTAGGGATCTGAAAAGGATAAGCGAAAAGAAATGGCAGATAAAGAGGAGAGAACTAAGAAGGTATTATTATCTCATCTTCTTTAAATATTTCTGACTTTTAAATTGTTTACTCGGGTTTTACCCTACGCCTGGCAAAATTTTAAAAGTCTTAGGGCAGCCACCAGCTTTTGTTTTCCTTAGTGACGCAAGGGCAAGTATTTAGCCATAAATCTCATTTTGAACATAACAATTAATGCATAACACACAACACATAGTAAAAGATAAAATGAAAAATCTCAATTTCCGATCAATATACATTAGTTTTCACGAGTTATTATTCATCTAAGATCATTCTCATAATGGAGAAACGAAACTGGAAAGACTAAAATTTTGCCTTGCCCCAAGAAGATAAACAATGCGACTCTAGACTCTAGACCCTACGAGCCTATATTTTTTCCAAAGTTGTTTTGATGAATTGAATGAACAAAGAAAAAGAGACAAAAATGAAATGGTAAACGAGGAAAGGAAAAAAAAATCGAGAGAAAGAACAGACCTTTTAGGTTGTCTCGTCTCTTAGCGCCCCAAACACCTTTCCCACCTACAAAGGAAGACAAAATTATGGCTGTCTTTTAGTGTGACCTGTTACTTTTCAGGCATAAATTATTGAGTTTTATACTTCAGATAATGTGCAAGTTGTTTGTTTTAGTGACAAATAAATGTTGTCTTTTCGGCACTCATCCCATTAAACAGACCCACAACCTGACACTAGTACTAAAATTTTCTCCGAAGTCAATTATGTATGAAGCATATGCTTTCCACGTTTCAATAGTGTAACCATGGAGGAGCGTGCCTCTTGTTCAAAATAAATAAAGGCTACTCTAACTTCAGAAACCTTCTATCCTTGAGGCATGAGCCTTACATTTTGAAAATGTTGATGTCCGCCAGCACATAGGATGCTCTTTATTTGGTTTATTCCGAACCTACCTTAAGAAATTTAATTGAATTACTTTTTCTTTTAAGAATATTATATCAGTGGTTGAAATTTGCACTGATGACCTATTAACGTAGGTAGAGGTGACGGCATACTTTGTGAGCCCATGCTGAGACTGACCGGAAGAAATTGAATATGATAATATTACTCAATTTTTAGAACCATTATTAGAGGAAACTAAGGTTATTTTAAATTGTGCTTTGATGAGTTTTATTTGGCAAAATGATTGCAATGAAATCATCCATCAATTTGATTATAGTAGACTTCCAAAAAAATGAATTTAATGCGTTAAAGTAGTCTTTATTCCAAATGATAGAATTTGCTTCCAAATATTTTCTTATACAAAGCTTTGGTTCTAACTTCTAATTAGGCTCATATCAGCATAAAGGAGTTTTTATTTTGCTTGCCATACAACATTGTTTTGGCCGTTCTAGACCCTGTAAAAGGTTAAATGACTGATGTTTTTCTTCTTCACTTAGTCTTTGAGTATCAACGAGTTTTTGAGGCCTGCGGACGGAGAGCGTCACTACGCCCCTGGTGGCCGAGGAAGGGGTCGTGGACGTGGTTCAAGGGGAGGATACAGTGGCAGCCCGATGAGCAATGTTGCAGCCCCATCCATTGGAGACCCTGGGCAGTTCCCAACCTTAGGTGCGAAGTAAATTTCGCAAATAAATTTTCCCTTACAAAACTGTGTTTTTGATCTGGGGCAGGAAACTGACTAGAATAATATAGTCTCTCCTGTATCAAAATGATTTTTAAGTTTAATTTGTTTAGGTGTAAATTGTCAAAGTCCTTGTATTTTCCCTTGTCCACCTTTCTTTGTGTGTTTTCAACTGTTGTTTCAAGACTGTTTGCCAGATCAAACTGTTTATTTATGGACTTCCTTCTTCCCCATCTGAATTTGGCGTTTTGTTTTTCATTTGTTGCTCTTAATGGTTCCGATAATTGCTTTTTGCTATTTGTCAAGTATATGGAATGAATTTTCCTTCTGAAAGTATCTAATTGAATGTAAAATAAACTAAGGTCCGTTTCATAAGCAATCGTTTG

Coding sequence (CDS)

ATGACCACCCTTAATCCTTTTGATTTGTTGGGGGATGATGATGCTGAGGACCCCTCTCAGCTAATTGCGGCTAAGGTGGCGGCGGTGGCCACGGCGCCGCTGTCTAAGAAAGCCCCTGCTCAGACCAAACCCCTTCCTTCTGGGGCCCAACTGAATAAGCCTGCTAGTCTTCCTTCCAAGCCTCTTCCACCTGCTCAGGCTGTAAGAGAATCAAGGAATGAAGGCAGTCGTGGAGGTCGTGGCAGTGGACGAGGTGGAGGACGGGGATATGGGTATGGGCGAGGTCGCGAGGGTGGTGGGTTTAATCGAGACTCTACCAATAATGAGAACATTAATGCACCTGAAGATGGAGTGGGTGGTAAGACATCTGAAAGACGTGGATATGGTGGGCCTCGTGGTCGTGGTGGCCGTCGAGGTGGTTTCAATGATGGAGAAGGTGCTGAAGGGGAACGCCCTCGTAGAGCATTTGAACGCCACAGTGGAACTGGTCGTGGAAATGAATTTAAACGAGAAGGGTCTGGTCGTGGAAATTGGGGAAGGTCAACCGACGAATTTGCTGAGTAA

Protein sequence

MTTLNPFDLLGDDDAEDPSQLIAAKVAAVATAPLSKKAPAQTKPLPSGAQLNKPASLPSKPLPPAQAVRESRNEGSRGGRGSGRGGGRGYGYGRGREGGGFNRDSTNNENINAPEDGVGGKTSERRGYGGPRGRGGRRGGFNDGEGAEGERPRRAFERHSGTGRGNEFKREGSGRGNWGRSTDEFAE

Homology

[Close]

BLAST of Cucsat.G18073 vs. ExPASy Swiss-Prot
Match: O23523 (RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGGA PE=1 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.9e-44
Identity = 116/200 (58.00%), Postives = 142/200 (71.00%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEF-AEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQ 63
           ++FKR+GSGRGNWG   +E  AE       ETEK+VG EKP  +D  +  N E+   E  
Sbjct: 161 SDFKRDGSGRGNWGTPGEEIAAETEAVAGVETEKDVG-EKPAVDDVAADANKEDTVVE-- 220

Query: 64  ETEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLG 123
           E EPEDKEMTL+EYEK+LE+K+KAL +L T ERKVD K F SMQQLS+KK N++IFIKLG
Sbjct: 221 EKEPEDKEMTLDEYEKILEEKKKALQSLTTSERKVDTKVFESMQQLSNKKSNDEIFIKLG 280

Query: 124 SEKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMS-- 183
           S+KDKRK+  DKEE+ KK++SINEFL+PA+G  +Y  G  GRGRG   RGG S       
Sbjct: 281 SDKDKRKD--DKEEKAKKAVSINEFLKPAEGGNYYRGGRGGRGRGGRGRGGVSSGESGGY 340

Query: 184 -NVAAPSIGDPGQFPTLGAK 200
            N AAP+IGD  QFP+LG K
Sbjct: 341 RNEAAPAIGDAAQFPSLGGK 355

[Close]

BLAST of Cucsat.G18073 vs. ExPASy Swiss-Prot
Match: Q9SQ56 (RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=4097 GN=RggA PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.4e-44
Identity = 116/200 (58.00%), Postives = 145/200 (72.50%), Query Frame = 0


Query: 4   NEF-KREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQ 63
           NE+ KREGSGRGNWG   D+ A+     VN+ EK V  EK   +++    N ++ A EP+
Sbjct: 104 NEYIKREGSGRGNWGTPADDIAQETEVPVNDGEKIVEAEKEAGQEEAEDTNKDSTAAEPE 163

Query: 64  ETEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVD-PKEFASMQQLSSKKDNNDIFIKL 123
           E EPE+KEMTLEEYEKL+E+KRKALLALK EERKV+  KE  SMQ LS+KK++++IFIKL
Sbjct: 164 EKEPEEKEMTLEEYEKLMEEKRKALLALKPEERKVNLDKELESMQLLSNKKNDDEIFIKL 223

Query: 124 GSEKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSN 183
           GSEK+KRKE  +K  +T+   SINEFL+PA+GE +   GGRGRG GRG RGG+ G    N
Sbjct: 224 GSEKEKRKEAVEKARKTQ---SINEFLKPAEGENYSRRGGRGRGPGRG-RGGFGGGVGGN 283

Query: 184 --VAAPSIGDPGQFPTLGAK 200
              +APSI D GQFP+L AK
Sbjct: 284 KSFSAPSIEDVGQFPSLVAK 299

[Close]

BLAST of Cucsat.G18073 vs. ExPASy Swiss-Prot
Match: O23593 (RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGGB PE=1 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.6e-39
Identity = 108/213 (50.70%), Postives = 137/213 (64.32%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NE KR+G+GR NWG + D+   V  E+    +KN+  EK   E + +    E PA++ +E
Sbjct: 150 NEDKRDGAGRANWGTTQDDITPVTEESTAVVDKNLTVEKQDGEGEATDAKNETPAEKAEE 209

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNND-IFIKLG 123
            +PEDKEMTLEEYEK+LE+K+KAL A K EERKVD K F +MQQLSSKK NND +FIKLG
Sbjct: 210 -KPEDKEMTLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQQLSSKKSNNDEVFIKLG 269

Query: 124 SEKDKRKEMADKEERTKKSLSINEFLRPADGERHYAP-----GGR-------------GR 183
           +EKDKR  + ++EE+T+KSLSINEFL+PADG+ +Y P     GGR             GR
Sbjct: 270 TEKDKR--ITEREEKTRKSLSINEFLKPADGKSYYRPRGGYQGGREGRGPREGNQRDGGR 329

Query: 184 GRGRGSRGGYSGSPMSNVAAPSIGDPGQFPTLG 198
               G R    G   +    P+IGD  QFPTLG
Sbjct: 330 NLREGGRNQRDGGAAAQAPTPAIGDSAQFPTLG 359

[Close]

BLAST of Cucsat.G18073 vs. ExPASy Swiss-Prot
Match: Q9LVT8 (RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGGC PE=1 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.3e-36
Identity = 107/197 (54.31%), Postives = 132/197 (67.01%), Query Frame = 0


Query: 7   KREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQETEP 66
           KR G GRGNWG + D+    + E   E EK+   EK   ED+T     E  A+E  + E 
Sbjct: 164 KRNGGGRGNWGTTEDDIPPTSEEPTTEVEKSPVAEKQGGEDETPEAKKELTAEEKAQKEA 223

Query: 67  ED---KEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKD-NNDIFIKLG 126
           E+   +EMTLEEYEK+LE+K+KAL A K EERKVD K F SMQQLS+KK+ + +IFIKLG
Sbjct: 224 EEAEAREMTLEEYEKILEEKKKALQATKVEERKVDTKVFESMQQLSNKKNTDEEIFIKLG 283

Query: 127 SEKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGR-GRGSRG-GYSGSPMS 186
           S+K+KRK   D  E+ KKSLSINEFL+PADG+R+   GG  RGR GRG RG G +     
Sbjct: 284 SDKEKRK---DATEKAKKSLSINEFLKPADGKRYNGRGGGSRGRGGRGGRGEGGNQRYAK 343

Query: 187 NVAAPSIGDPGQFPTLG 198
             AAP+IGD  QFP+LG
Sbjct: 344 EAAAPAIGDTAQFPSLG 357

[Close]

BLAST of Cucsat.G18073 vs. NCBI nr
Match: XP_004140509.1 (RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46515.1 hypothetical protein Csa_004977 [Cucumis sativus])

HSP 1 Score: 366 bits (939), Expect = 1.24e-124
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE
Sbjct: 166 NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 225

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS
Sbjct: 226 TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 285

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA
Sbjct: 286 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 345

Query: 184 APSIGDPGQFPTLGAK 199
           APSIGDPGQFPTLGAK
Sbjct: 346 APSIGDPGQFPTLGAK 361

[Close]

BLAST of Cucsat.G18073 vs. NCBI nr
Match: XP_008459799.1 (PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo])

HSP 1 Score: 341 bits (874), Expect = 9.33e-115
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREGSGRGNWGRSTDEFAEVA ETVNETEKNVGDEKPIQE+DTSG NT++PAKEP+E
Sbjct: 166 NEFKREGSGRGNWGRSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEE 225

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS
Sbjct: 226 TEPEDKEMTLEEYEKLLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 285

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGYSGS MSNVA
Sbjct: 286 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVA 345

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFP LGAK
Sbjct: 346 APSIEDPGQFPILGAK 361

[Close]

BLAST of Cucsat.G18073 vs. NCBI nr
Match: KAA0039788.1 (H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa] >TYK24709.1 H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 341 bits (874), Expect = 9.64e-115
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREGSGRGNWGRSTDEFAEVA ETVNETEKNVGDEKPIQE+DTSG NT++PAKEP+E
Sbjct: 167 NEFKREGSGRGNWGRSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEE 226

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS
Sbjct: 227 TEPEDKEMTLEEYEKLLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 286

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGYSGS MSNVA
Sbjct: 287 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVA 346

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFP LGAK
Sbjct: 347 APSIEDPGQFPILGAK 362

[Close]

BLAST of Cucsat.G18073 vs. NCBI nr
Match: XP_038874269.1 (RGG repeats nuclear RNA binding protein A-like [Benincasa hispida])

HSP 1 Score: 339 bits (869), Expect = 4.25e-114
Identity = 183/196 (93.37%), Postives = 188/196 (95.92%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREG+GRGNWGRSTDEFAEV  E VNETEKNVGDEKPIQEDDTSGVNTENPAKEP+E
Sbjct: 159 NEFKREGAGRGNWGRSTDEFAEVPEEAVNETEKNVGDEKPIQEDDTSGVNTENPAKEPEE 218

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
             PEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNN+IFIKLGS
Sbjct: 219 AVPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNEIFIKLGS 278

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHYAPGGRGRGRGRG RGGYSGS MSNVA
Sbjct: 279 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYAPGGRGRGRGRGLRGGYSGSSMSNVA 338

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFPTLGAK
Sbjct: 339 APSIEDPGQFPTLGAK 354

[Close]

BLAST of Cucsat.G18073 vs. NCBI nr
Match: XP_022933029.1 (RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 329 bits (844), Expect = 3.14e-110
Identity = 176/196 (89.80%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NE KREG+GRGNWGR  DEFAEVA E VNE EKNVGDEKP+QE+DTSGVN+ENPAKEP+E
Sbjct: 164 NENKREGAGRGNWGRPADEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEE 223

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGS
Sbjct: 224 TEPEDKEMTLEEYEKLLEDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGS 283

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGY GS +SNVA
Sbjct: 284 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYGGSSISNVA 343

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFPTLGAK
Sbjct: 344 APSIEDPGQFPTLGAK 359

[Close]

BLAST of Cucsat.G18073 vs. ExPASy TrEMBL
Match: A0A0A0K9Z4 (HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106180 PE=4 SV=1)

HSP 1 Score: 366 bits (939), Expect = 6.02e-125
Identity = 196/196 (100.00%), Postives = 196/196 (100.00%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE
Sbjct: 166 NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 225

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS
Sbjct: 226 TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 285

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA
Sbjct: 286 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 345

Query: 184 APSIGDPGQFPTLGAK 199
           APSIGDPGQFPTLGAK
Sbjct: 346 APSIGDPGQFPTLGAK 361

[Close]

BLAST of Cucsat.G18073 vs. ExPASy TrEMBL
Match: A0A1S3CBH1 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103498821 PE=4 SV=1)

HSP 1 Score: 341 bits (874), Expect = 4.52e-115
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREGSGRGNWGRSTDEFAEVA ETVNETEKNVGDEKPIQE+DTSG NT++PAKEP+E
Sbjct: 166 NEFKREGSGRGNWGRSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEE 225

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS
Sbjct: 226 TEPEDKEMTLEEYEKLLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 285

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGYSGS MSNVA
Sbjct: 286 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVA 345

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFP LGAK
Sbjct: 346 APSIEDPGQFPILGAK 361

[Close]

BLAST of Cucsat.G18073 vs. ExPASy TrEMBL
Match: A0A5A7TA33 (H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002670 PE=4 SV=1)

HSP 1 Score: 341 bits (874), Expect = 4.67e-115
Identity = 183/196 (93.37%), Postives = 190/196 (96.94%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NEFKREGSGRGNWGRSTDEFAEVA ETVNETEKNVGDEKPIQE+DTSG NT++PAKEP+E
Sbjct: 167 NEFKREGSGRGNWGRSTDEFAEVAEETVNETEKNVGDEKPIQENDTSGANTDDPAKEPEE 226

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRK+LLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS
Sbjct: 227 TEPEDKEMTLEEYEKLLEDKRKSLLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 286

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGYSGS MSNVA
Sbjct: 287 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYSGSSMSNVA 346

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFP LGAK
Sbjct: 347 APSIEDPGQFPILGAK 362

[Close]

BLAST of Cucsat.G18073 vs. ExPASy TrEMBL
Match: A0A6J1EYL1 (RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 329 bits (844), Expect = 1.52e-110
Identity = 176/196 (89.80%), Postives = 186/196 (94.90%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NE KREG+GRGNWGR  DEFAEVA E VNE EKNVGDEKP+QE+DTSGVN+ENPAKEP+E
Sbjct: 164 NENKREGAGRGNWGRPADEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEE 223

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKLGS 123
           TEPEDKEMTLEEYEKLLEDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKLGS
Sbjct: 224 TEPEDKEMTLEEYEKLLEDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLGS 283

Query: 124 EKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNVA 183
           EKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGY GS +SNVA
Sbjct: 284 EKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYGGSSISNVA 343

Query: 184 APSIGDPGQFPTLGAK 199
           APSI DPGQFPTLGAK
Sbjct: 344 APSIEDPGQFPTLGAK 359

[Close]

BLAST of Cucsat.G18073 vs. ExPASy TrEMBL
Match: A0A6J1F3H7 (RGG repeats nuclear RNA binding protein A-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111439720 PE=4 SV=1)

HSP 1 Score: 325 bits (832), Expect = 1.04e-108
Identity = 176/197 (89.34%), Postives = 186/197 (94.42%), Query Frame = 0


Query: 4   NEFKREGSGRGNWGRSTDEFAEVAGETVNETEKNVGDEKPIQEDDTSGVNTENPAKEPQE 63
           NE KREG+GRGNWGR  DEFAEVA E VNE EKNVGDEKP+QE+DTSGVN+ENPAKEP+E
Sbjct: 164 NENKREGAGRGNWGRPADEFAEVAEEAVNEPEKNVGDEKPVQEEDTSGVNSENPAKEPEE 223

Query: 64  TEPEDKEMTLEEYEKLLEDKRKALLALKTEERKVDPKEFASMQQLSSKKDNNDIFIKL-G 123
           TEPEDKEMTLEEYEKLLEDKRKAL+ALKTEERKVDPKEFASMQQLSSKK+NNDIFIKL G
Sbjct: 224 TEPEDKEMTLEEYEKLLEDKRKALMALKTEERKVDPKEFASMQQLSSKKENNDIFIKLQG 283

Query: 124 SEKDKRKEMADKEERTKKSLSINEFLRPADGERHYAPGGRGRGRGRGSRGGYSGSPMSNV 183
           SEKDKRKE+ADKEERTKKSLSINEFLRPA+GERHY PGGRGRGRGRGSRGGY GS +SNV
Sbjct: 284 SEKDKRKEIADKEERTKKSLSINEFLRPAEGERHYTPGGRGRGRGRGSRGGYGGSSISNV 343

Query: 184 AAPSIGDPGQFPTLGAK 199
           AAPSI DPGQFPTLGAK
Sbjct: 344 AAPSIEDPGQFPTLGAK 360

The following BLAST results are available for this feature:

BLAST of Cucsat.G18073 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23523	2.9e-44	58.00	RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9SQ56	8.4e-44	58.00	RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum OX=409...	[more]
O23593	1.6e-39	50.70	RGG repeats nuclear RNA binding protein B OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]
Q9LVT8	1.3e-36	54.31	RGG repeats nuclear RNA binding protein C OS=Arabidopsis thaliana OX=3702 GN=RGG...	[more]

BLAST of Cucsat.G18073 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140509.1	1.24e-124	100.00	RGG repeats nuclear RNA binding protein A [Cucumis sativus] >KGN46515.1 hypothet...	[more]
XP_008459799.1	9.33e-115	93.37	PREDICTED: H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo]	[more]
KAA0039788.1	9.64e-115	93.37	H/ACA ribonucleoprotein complex subunit 1-like [Cucumis melo var. makuwa] >TYK24...	[more]
XP_038874269.1	4.25e-114	93.37	RGG repeats nuclear RNA binding protein A-like [Benincasa hispida]	[more]
XP_022933029.1	3.14e-110	89.80	RGG repeats nuclear RNA binding protein A-like isoform X2 [Cucurbita moschata]	[more]

BLAST of Cucsat.G18073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9Z4	6.02e-125	100.00	HABP4_PAI-RBP1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G106...	[more]
A0A1S3CBH1	4.52e-115	93.37	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A5A7TA33	4.67e-115	93.37	H/ACA ribonucleoprotein complex subunit 1-like OS=Cucumis melo var. makuwa OX=11...	[more]
A0A6J1EYL1	1.52e-110	89.80	RGG repeats nuclear RNA binding protein A-like isoform X2 OS=Cucurbita moschata ...	[more]
A0A6J1F3H7	1.04e-108	89.34	RGG repeats nuclear RNA binding protein A-like isoform X1 OS=Cucurbita moschata ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019084	Stm1-like, N-terminal	PFAM	PF09598	Stm1_N	coord: 1..81 e-value: 3.2E-19 score: 69.6
IPR006861	Hyaluronan/mRNA-binding protein	PFAM	PF04774	HABP4_PAI-RBP1	coord: 152..185 e-value: 1.3E-10 score: 42.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..187
None	No IPR available	PANTHER	PTHR12299:SF64	PLASMINOGEN ACTIVATOR INHIBITOR 1 RNA-BINDING PROTEIN-LIKE	coord: 1..186
IPR039764	RNA binding protein HABP4/SERBP1	PANTHER	PTHR12299	HYALURONIC ACID-BINDING PROTEIN 4	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18073.T12	Cucsat.G18073.T12	mRNA
Cucsat.G18073.T11	Cucsat.G18073.T11	mRNA
Cucsat.G18073.T3	Cucsat.G18073.T3	mRNA
Cucsat.G18073.T1	Cucsat.G18073.T1	mRNA
Cucsat.G18073.T5	Cucsat.G18073.T5	mRNA
Cucsat.G18073.T4	Cucsat.G18073.T4	mRNA
Cucsat.G18073.T2	Cucsat.G18073.T2	mRNA
Cucsat.G18073.T6	Cucsat.G18073.T6	mRNA
Cucsat.G18073.T10	Cucsat.G18073.T10	mRNA
Cucsat.G18073.T9	Cucsat.G18073.T9	mRNA
Cucsat.G18073.T8	Cucsat.G18073.T8	mRNA
Cucsat.G18073.T7	Cucsat.G18073.T7	mRNA
Cucsat.G18073.T13	Cucsat.G18073.T13	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003723	RNA binding