Cucsat.G18059 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G18059
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Late cornified envelope protein 1E
Location	ctg3345: 4654502 .. 4655477 (+)
RNA-Seq Expression	Cucsat.G18059
Synteny	Cucsat.G18059

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAGTCTCTCTCTCTCTCTCTCTCTCTCATTTCTCCTTTTTCTCCTGTTTGGTAGTTCATCTTCATCATCTCATTAAGTTTCTTTTTTTCTTTTCATTTTTAGTTTGGTAAAATTACAATAACAATAATGGTGGATCTTCAGATCGTTTGTTGCATGTGTGGCGATATCGGTTTCCCCGACAAGCTCTTCCACTGTAACAAGTGTCGCAACCGCTTCCAACATTCGTATATCTCTTCTGCTGCTCCTTTTCTTTTCTTTCTTTCTTTCTTTTTATCATCACATGCATGTTTTCCATCTTCAATTCAAATCCTTTTAGTTTAAATGGCGTGCCTTAAATTCTTGTTATCTCTTCTTTTTTTTTTTTTTAATTGGAAATAGTAATTCTTAATAACTATCTTATATTGTCATCATTTTGTTGGATTTTGGGTTTCGTGCCAATTTTCCCACTCATAAAATAGCTAAATAACTAATTAAAATTAAATTGTTTCTGAAATAAAATTGTAAACATAGTACCGGAGCTAATTTGTTTTTTGTTTCTTGGAATCTAACAGCTACTGCAGCAATTACTATAGTGAATCGGCGGAGCCAATAGAGGTGTGTGATTGGTGTCAGTGTGAAGGACGGAGCACCTCCAGATCACATGGAAGCTCGTCCAGGAGACCGCCCTCCACTGGTACAAACGCCACCGGAATCATGACCCGCTCCGAGTATTCCGGCGACAAATTAATCAAGCATCATCATCATGATTCTCCCACCGAGAAGGGGAAGCACGGCGGCGCCGGTAGTACTTCGTCGCCCAGGCCGACGACGCGGAGGTACAAGCTTCTCAAGGACGTAATGTGCTGAAAAAAGGACGGTGTGAGCTAAAACGCAGCGTTTTGGGGTTCGTTTTATTTTCTCTCGATATATATAGTTCTCTTTTTCTTATTCTCAAATGTTAATTATTATTATTATTATTATTATTATTATTATTAT

Coding sequence (CDS)

ATGTGTGGCGATATCGGTTTCCCCGACAAGCTCTTCCACTGTAACAAGTGTCGCAACCGCTTCCAACATTCCTACTGCAGCAATTACTATAGTGAATCGGCGGAGCCAATAGAGGTGTGTGATTGGTGTCAGTGTGAAGGACGGAGCACCTCCAGATCACATGGAAGCTCGTCCAGGAGACCGCCCTCCACTGGTACAAACGCCACCGGAATCATGACCCGCTCCGAGTATTCCGGCGACAAATTAATCAAGCATCATCATCATGATTCTCCCACCGAGAAGGGGAAGCACGGCGGCGCCGGTAGTACTTCGTCGCCCAGGCCGACGACGCGGAGGTACAAGCTTCTCAAGGACGTAATGTGCTGA

Protein sequence

MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVMC

Homology

[Close]

BLAST of Cucsat.G18059 vs. NCBI nr
Match: XP_004140491.1 (uncharacterized protein LOC101205257 [Cucumis sativus] >KGN46561.1 hypothetical protein Csa_005625 [Cucumis sativus])

HSP 1 Score: 266 bits (680), Expect = 5.24e-90
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 60
           MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR
Sbjct: 10  MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 69

Query: 61  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVM 120
           PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVM
Sbjct: 70  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVM 129

[Close]

BLAST of Cucsat.G18059 vs. NCBI nr
Match: XP_008467003.1 (PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo])

HSP 1 Score: 248 bits (632), Expect = 1.18e-82
Identity = 117/123 (95.12%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS-RSHGSSS- 60
           MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS RSHGSSS 
Sbjct: 10  MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSSRSHGSSSS 69

Query: 61  RRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKD 120
           RRPPSTGTNATGIM+RSEYS DKLIKHHH DSPTEKGKHGGAGST SPRPTTRRYKLLKD
Sbjct: 70  RRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPTTRRYKLLKD 129

[Close]

BLAST of Cucsat.G18059 vs. NCBI nr
Match: XP_038875571.1 (uncharacterized protein LOC120067983 [Benincasa hispida])

HSP 1 Score: 233 bits (593), Expect = 1.01e-76
Identity = 109/123 (88.62%), Postives = 114/123 (92.68%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 60
           MCGDIGFPDKLF CNKC NRFQHSYCSNYYSESAEPIEVCDWCQCEGR++SRSHGSSSRR
Sbjct: 10  MCGDIGFPDKLFRCNKCHNRFQHSYCSNYYSESAEPIEVCDWCQCEGRTSSRSHGSSSRR 69

Query: 61  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT--EKGKHGGAGSTSSPRPTTRRYKLLKD 120
           PPSTGTNA G+M+RSEYSG+K IKHHH DS T  EKGKHGGAGST SPRPTTRRYKLLKD
Sbjct: 70  PPSTGTNAAGLMSRSEYSGEK-IKHHHDDSATTIEKGKHGGAGSTPSPRPTTRRYKLLKD 129

[Close]

BLAST of Cucsat.G18059 vs. NCBI nr
Match: KAA0041671.1 (uncharacterized protein E6C27_scaffold14518G00010 [Cucumis melo var. makuwa] >TYJ96635.1 uncharacterized protein E5676_scaffold27861G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 222 bits (565), Expect = 1.11e-72
Identity = 109/123 (88.62%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS-RSHGSSS- 60
           MCGDIGFPDKLFHCNK        YCSNYYSESAEPIEVCDWCQCEGRSTS RSHGSSS 
Sbjct: 1   MCGDIGFPDKLFHCNK--------YCSNYYSESAEPIEVCDWCQCEGRSTSSRSHGSSSS 60

Query: 61  RRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKD 120
           RRPPSTGTNATGIM+RSEYS DKLIKHHH DSPTEKGKHGGAGST SPRPTTRRYKLLKD
Sbjct: 61  RRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPTTRRYKLLKD 115

[Close]

BLAST of Cucsat.G18059 vs. NCBI nr
Match: KAG6575224.1 (hypothetical protein SDJN03_25863, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013793.1 hypothetical protein SDJN02_23960 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 213 bits (541), Expect = 8.60e-69
Identity = 99/123 (80.49%), Postives = 107/123 (86.99%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 60
           +CGD+GFPDKLF C KC NRFQHSYCSNYYSESAEPIEVCDWCQCEGRS+SRSHG+SSRR
Sbjct: 10  LCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSSRSHGTSSRR 69

Query: 61  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT--EKGKHGGAGSTSSPRPTTRRYKLLKD 120
           PP T T A GI++RS YSGDK IKHHH DS    +KGK GGAGS +SPRPTTRRYKLLKD
Sbjct: 70  PPQTATEAAGILSRSVYSGDK-IKHHHEDSAATVDKGKQGGAGSVASPRPTTRRYKLLKD 129

[Close]

BLAST of Cucsat.G18059 vs. ExPASy TrEMBL
Match: A0A0A0KFQ0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1)

HSP 1 Score: 266 bits (680), Expect = 2.53e-90
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 60
           MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR
Sbjct: 10  MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 69

Query: 61  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVM 120
           PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVM
Sbjct: 70  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKDVM 129

[Close]

BLAST of Cucsat.G18059 vs. ExPASy TrEMBL
Match: A0A1S3CSH8 (uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=4 SV=1)

HSP 1 Score: 248 bits (632), Expect = 5.70e-83
Identity = 117/123 (95.12%), Postives = 118/123 (95.93%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS-RSHGSSS- 60
           MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS RSHGSSS 
Sbjct: 10  MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSSRSHGSSSS 69

Query: 61  RRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKD 120
           RRPPSTGTNATGIM+RSEYS DKLIKHHH DSPTEKGKHGGAGST SPRPTTRRYKLLKD
Sbjct: 70  RRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPTTRRYKLLKD 129

[Close]

BLAST of Cucsat.G18059 vs. ExPASy TrEMBL
Match: A0A5D3BDU2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold27861G00010 PE=4 SV=1)

HSP 1 Score: 222 bits (565), Expect = 5.40e-73
Identity = 109/123 (88.62%), Postives = 110/123 (89.43%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTS-RSHGSSS- 60
           MCGDIGFPDKLFHCNK        YCSNYYSESAEPIEVCDWCQCEGRSTS RSHGSSS 
Sbjct: 1   MCGDIGFPDKLFHCNK--------YCSNYYSESAEPIEVCDWCQCEGRSTSSRSHGSSSS 60

Query: 61  RRPPSTGTNATGIMTRSEYSGDKLIKHHHHDSPTEKGKHGGAGSTSSPRPTTRRYKLLKD 120
           RRPPSTGTNATGIM+RSEYS DKLIKHHH DSPTEKGKHGGAGST SPRPTTRRYKLLKD
Sbjct: 61  RRPPSTGTNATGIMSRSEYSSDKLIKHHHDDSPTEKGKHGGAGSTPSPRPTTRRYKLLKD 115

[Close]

BLAST of Cucsat.G18059 vs. ExPASy TrEMBL
Match: A0A6J1L0S8 (uncharacterized protein LOC111499326 OS=Cucurbita maxima OX=3661 GN=LOC111499326 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.19e-68
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 60
           +CGD+GFPDKLF C KC NRFQHSYCSNYYSESAEPIEVCDWCQCEGRS+SRSHG+SSRR
Sbjct: 10  LCGDVGFPDKLFRCVKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSSRSHGTSSRR 69

Query: 61  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT--EKGKHGGAGSTSSPRPTTRRYKLLKD 120
           PP T T A GIM+RS YSGDK IKHHH D+    +KGK GGAGS  SPRPTTRRYKLLKD
Sbjct: 70  PPPTATEAAGIMSRSVYSGDK-IKHHHEDAAAAVDKGKQGGAGSAPSPRPTTRRYKLLKD 129

[Close]

BLAST of Cucsat.G18059 vs. ExPASy TrEMBL
Match: A0A6J1H4E1 (uncharacterized protein LOC111460301 OS=Cucurbita moschata OX=3662 GN=LOC111460301 PE=4 SV=1)

HSP 1 Score: 211 bits (538), Expect = 1.19e-68
Identity = 99/123 (80.49%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MCGDIGFPDKLFHCNKCRNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSTSRSHGSSSRR 60
           +CGD+GFPDKLF C KC NRFQHSYCSNYYSESAEPIEVCDWCQCEGRS+SRSHG+SSRR
Sbjct: 10  LCGDVGFPDKLFRCIKCSNRFQHSYCSNYYSESAEPIEVCDWCQCEGRSSSRSHGTSSRR 69

Query: 61  PPSTGTNATGIMTRSEYSGDKLIKHHHHDSPT--EKGKHGGAGSTSSPRPTTRRYKLLKD 120
           PP T T   GIM+RS YSGDK IKHHH DS    +KGK GGAGS +SPRPTTRRYKLLKD
Sbjct: 70  PPPTATEPAGIMSRSVYSGDK-IKHHHEDSAATVDKGKQGGAGSVASPRPTTRRYKLLKD 129

The following BLAST results are available for this feature:

BLAST of Cucsat.G18059 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G18059 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140491.1	5.24e-90	100.00	uncharacterized protein LOC101205257 [Cucumis sativus] >KGN46561.1 hypothetical ...	[more]
XP_008467003.1	1.18e-82	95.12	PREDICTED: uncharacterized protein LOC103504413 [Cucumis melo]	[more]
XP_038875571.1	1.01e-76	88.62	uncharacterized protein LOC120067983 [Benincasa hispida]	[more]
KAA0041671.1	1.11e-72	88.62	uncharacterized protein E6C27_scaffold14518G00010 [Cucumis melo var. makuwa] >TY...	[more]
KAG6575224.1	8.60e-69	80.49	hypothetical protein SDJN03_25863, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Cucsat.G18059 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFQ0	2.53e-90	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G108590 PE=4 SV=1	[more]
A0A1S3CSH8	5.70e-83	95.12	uncharacterized protein LOC103504413 OS=Cucumis melo OX=3656 GN=LOC103504413 PE=...	[more]
A0A5D3BDU2	5.40e-73	88.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1L0S8	1.19e-68	80.49	uncharacterized protein LOC111499326 OS=Cucurbita maxima OX=3661 GN=LOC111499326...	[more]
A0A6J1H4E1	1.19e-68	80.49	uncharacterized protein LOC111460301 OS=Cucurbita moschata OX=3662 GN=LOC1114603...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..95
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 1..121
None	No IPR available	PANTHER	PTHR33779:SF16	SUBFAMILY NOT NAMED	coord: 1..121

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G18059.T3	Cucsat.G18059.T3	mRNA