Cucsat.G17384 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G17384
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Kelch repeat-containing F-box family protein
Location	ctg27: 1210354 .. 1211161 (-)
RNA-Seq Expression	Cucsat.G17384
Synteny	Cucsat.G17384

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATACACATATGTCTATATTTAATTATGAGGTATAAGCCAAGATTTGGTGCATAGTATGTGTCAACTTGGATAGGAAGAAATCAAAATGGAAGGAATTAGGGAATATCCCAATTCCCCCAAGCGCCCATTTTGTTTAGGGTAAGCGTAAGTTGAATGTAATTGAAAATTCTAAAACCTGGATTCCTATTTTTTCAATCAAACGCTCGCAAAAGTTGGAACATTGCCTTGAACATCAACACACAATCTCCATAATCTTCTTTCTTTCTTTTTCTTTCCTTCTCCCTTGTGTTTTTCTGGCTTTGGGTTTTCTTTTAATTCGTCAAACTCTCCTTTTTTGGCACCTCCTGTTTTGAATCTTCATACCAATCCAACCATACCCTTTTTTCTCTTCTTCAATCTGAGCAATACACCACAAATTTCCTCTTCTTCCAGGTATAACTGCTCGTTCTTTTTCATTTCTTTCTTCTTCTTTACCAATGCTGCCTTAATTTTGTTTATACCCGTTTCATAATTTTCCCTTATTGTTCAATAATTCTTGGATTTTTTCTGTTTTGAATCTTCGGTTCTTCTTTATCACCCACTTTTTCTTTGGTTGAATTCGACGCCGGTTTAACTTTGAAAGCAAATTTGCGGTCTAATTTATTCTTTTCTCCCCTAGTTTGTGGATGTTTGAGTAAATGACACGATTATGAGTTCAGTCGAGTTTTTATATTGTTTCCCCCCTTTGTAAATTTTAGGTTTTGGTATAATTTGTGATTGTGTGTTTGGATTAGATGATGGGTTTATATTGATTCTTGCATACGGTAGGTTGTTGGCTAGAATTTCCTTGATATTAGAGTCTGAGCAGTTTAACTCATGCGGATATGGCCTGGAAGTTTGATGCCATTTAGGCAGTTTAGGTGCAAGAACCCGGGATCATGCACAATAGATGGAGCTTGTTACCGCATTATCAAAACGGGTTATTGGGATAATACTCTATTCTGTTTAGTTTGAGTTGGAGAGTTTTTATCGAAAATCTCTTGCCCTTGACTGGTATCAGTATCTTGTACTAAGTCTGTCTTAAATCTCTAGACCAGAGGTTTTATTAAGTCTTCTTCTTCATTCTGATAAGTTAAAGGTTTCTACATTGCTTTTCTTGGAACCTTCAAATGGTTGAGTGGAAAACTGTGGATCTTACATCCTAATTAATAAGTTCCATTATCATGTCCTGTTGAATAATTCTGCCAGATTTTCTCTTCTCTAAGCATTGCCAATTCAAGCTTAATTCTCTAGACTCGAGGTTTTATTTAGTCTTATTCTTCTTCTTGTTAAGTATGAATATATTTCAGCACAAAGGGTTTCTACGTTGCTTTTTTTGGAATCTTCAAATGGTTTTTTGTGGAAAACTGTGGATGTCCTTACATAATAAGTAATAAGTTCCATTATCTGTTGAGTGATTTTGTTCAGATTTTGTCTTCTCTATGAATTGATATGTTTTGGCGTATCTCTTTTCTTCATACATATATTATTGAAGCAGACTAGGAAAAGCTGAAATATTTAAGAAAGGGAAGATCTTTCTCTTATTCTTCAAAATAAGTAGGTGAGAAGACGAGGTCACCTTCTTTCGTTGTTTCAATATTCATTAGTTTGCTTAGTATATGGTGACAATCTTTTGGTCTCATTGGAATCTTTTTACTCATATACAGCATGCTCTATTTCGAGGGTTCTTTGAAGATATTATTTTTAACTTATAATTCTTTTAGTAACTTTTAATATTGTTAGTTTCAACTGTGAACTTGGAACTCGTAGATGATGTATATAATTGCACTATAAGAGGTCTGATCTTGTTTCTAGAACCAGAAATCTTCCGTCTTGGAAGAGTTTGGCAGAGGGGATAAAGGTCGAGTTTAGAATGATGTCGCATATAAAGAAACTAGTGTGGAAAGGATGAGATGTTAGATGATTAGTTAATTTTTATATAGTCAAGTTATTAGATTTTGTTGATTTCTTTTTTATTAGAATGTTCTCTCACAACTTGAAGATGTTTCTTCTGTGTTCACGGAATGGATTCCCTAGTTGTTCTTGATCATTGGCATGCTTTAACTAACTTTTTTGTATCAAAGATATTCTTGAACCTACATTGAAATGTTAAGGGTTTGAAGTTACATCACTTATTTTTTTTTAAAAAATGTCCAACCAAATTTGTTTATCAATTTTCCATAGTTGTGGATGCTTATTATCTAATTCCGGTGCCTCGTTCTTTGTTAAAACTTTGGCTTGTATGTCTTCACTCTTCGCTAATCTCTTTCTAACCAAAAAAGAAGTTAATAATAAAAATAAAAAAAGTATTCACTAATCTCTTAATATCCTGGTACTTACGTTTGCATTTCTTTTACATATCTAACTTTATTGACTTGAGTAATGAATGTAGAGTCATTCATTAATTGAGACATGACAAATTGTAGTTTTTCTTCAGGCTTTGTAACTGAAGCTCACAGACAAGTATATTATTTGCGCAATTTTTTTGGGTAGCTTTATAGGTTAAGAGGTAAACTTGAGTACTAGAAACTTTATACAATTTATTTACTTGGGAATTTCCTTGTATCTTTTTTCCTTATTTGGAAAGTCTTATCATGAAAAAAACACCCATTACTGATGGGAATGAAAGTGCTCTTTTCTAATTGTTGGCCATTTATTGGTTAATTTCACATTATGAGATTTGAATATTGGTTAGATTAGTCGTATCATTATTATACACCTTTTCTTTCATTTGCTTGTTTATTCAAACAGTTTTTCTTATTTCTGGATGGGTTAAGACCCTAGTTTTGGAATTTATAACTATCTCTCATTGACTGCCTGAATTAGTTGCCTCTCATAACGACTTTGTCCATAGATACCACATTGTAGGAGTACATCCATCACGGAGTTGTGTGATGAATGTTGTTTTGCGGCTTAAAAATTCAATTATCAGTATGTGCAAAGTTGCTTTCTTTTCATCTTCTAAATTGTTACCTAATGTTGGATAGTGATTATCATTCTGTATTTCAATCACATCAAACTTTGAGAAGGTATTGACTGGTTCTCTAATGTTTGAATATTCTTCTTTGCTTCTCAGGATACTTGCTTTCTAAATAAGAAACAACCAGTGGTGGATAATCATCAGAAACGAATGAAAAGTGATTATGTTGACTGATCTGATTGACGGTCTCCCAGACGCTGTTGCCCATCAGTGCCTTGCACGTGTTCCCTTCCACCTCTATCCAAAGTTGGAGCTTGTTTCTCACTCCTGGCAAGCTGCCATTCGTAGTGCTGAACTGTTTAGAGTTCGACAGGAGATTGGATCATCAGAAGATCTTTTATGCGTATGTGCATTTGAACCTGAGAATCTATGGCAGCTTTACGACCCCATCAGAGACCTTTGGATAACAATTCCTGTACTTCCATCGAGAATTAGGCATCTTGCACACTTTGGTGCTGTCTCCACTGCTGGAAAGTTGTTTGTGCTGGGTGGTGGCAGTGATGCTGTTGATCCGTTAACCGGTGATCAAGATAGAAACTTTGCAACCAATGAGGTGTGGTCATACGATCCTGTAATACGTCGGTGGTCTCAACGTGCATCAATGCTCATACCACGTGCCATGTTTGCTTGTGGTGTTTTAGAAGGAAAGATTGTTGTTGCAGGTGGTTTTACTAGCTGCAGAAAATCAATTTCTCAGGCAGAAATGTACGATCCTGATAATGACGTTTGGATTTCCCTGCCTGATCTACACCGTACTCACAATTCTGCTTGCACAGGAGTGGTGATTGGAGGTGAGTTGCATGTCTTGCACAAGGGAATATCAAAAGTGCAAATTTTAGACAGCCTGCGGCTTGAATGGAGAGTTGAAGAGTATGGTTGGCCCCAAGGTCCAATGGCTGTTGTTCAAGATTCACTTTATGTGATGGGTCATGGACATATTTTTAAGCACCACGGAAGAGAACCTAAAAAATACGTTATTTCAGCATCCGAATTTCGCCAACGAATAGGGTTTGCAATGATTAGTTTGAGAGATGAAATTTACGTGATCGGAGGGGATATTGGTCCCGACCGTTTGAATTGGCACATCAAGCCAACGTCAGATGTTGACATATTAACAACAGGAGGCGAGAGACCAACATGGCGACATGCTGCTTCGATGACAAGATGCCGTGGAGCAATTCGGGGATGTGCTCAGTTGAGAATTTAGGAACTTTCTACATTCGTTTGTGTTTGTACCAATGTAATTGAATTGTATTTTGGGTCTGGAAAATCTTCCCTTCCCATGGCTGCTTCTTTTTGTAATCTTTGGTCTTTGATGTTAAATCCAGAGGGCAGTATATGTTGATGGATGGCTCCTGGAATTTGGATTTCATAGGAACGGTCTACAGTCTAATAGTACATGAATATTGATTATTACGAATTAGTATGATGGGGGAGGGGTCCAAATTTTCATTTCTAAATACTTCAATCAAAAAGAATGATTTATTGGCATCCATATTTTCTTTCTCC

Coding sequence (CDS)

ATGTTGACTGATCTGATTGACGGTCTCCCAGACGCTGTTGCCCATCAGTGCCTTGCACGTGTTCCCTTCCACCTCTATCCAAAGTTGGAGCTTGTTTCTCACTCCTGGCAAGCTGCCATTCGTAGTGCTGAACTGTTTAGAGTTCGACAGGAGATTGGATCATCAGAAGATCTTTTATGCGTATGTGCATTTGAACCTGAGAATCTATGGCAGCTTTACGACCCCATCAGAGACCTTTGGATAACAATTCCTGTACTTCCATCGAGAATTAGGCATCTTGCACACTTTGGTGCTGTCTCCACTGCTGGAAAGTTGTTTGTGCTGGGTGGTGGCAGTGATGCTGTTGATCCGTTAACCGGTGATCAAGATAGAAACTTTGCAACCAATGAGGTGTGGTCATACGATCCTGTAATACGTCGGTGGTCTCAACGTGCATCAATGCTCATACCACGTGCCATGTTTGCTTGTGGTGTTTTAGAAGGAAAGATTGTTGTTGCAGGTGGTTTTACTAGCTGCAGAAAATCAATTTCTCAGGCAGAAATGTACGATCCTGATAATGACGTTTGGATTTCCCTGCCTGATCTACACCGTACTCACAATTCTGCTTGCACAGGAGTGGTGATTGGAGGTGAGTTGCATGTCTTGCACAAGGGAATATCAAAAGTGCAAATTTTAGACAGCCTGCGGCTTGAATGGAGAGTTGAAGAGTATGGTTGGCCCCAAGGTCCAATGGCTGTTGTTCAAGATTCACTTTATGTGATGGGTCATGGACATATTTTTAAGCACCACGGAAGAGAACCTAAAAAATACGTTATTTCAGCATCCGAATTTCGCCAACGAATAGGGTTTGCAATGATTAGTTTGAGAGATGAAATTTACGTGATCGGAGGGGATATTGGTCCCGACCGTTTGAATTGGCACATCAAGCCAACGTCAGATGTTGACATATTAACAACAGGAGGCGAGAGACCAACATGGCGACATGCTGCTTCGATGACAAGATGCCGTGGAGCAATTCGGGGATGTGCTCAGTTGAGAATTTAG

Protein sequence

MLTDLIDGLPDAVAHQCLARVPFHLYPKLELVSHSWQAAIRSAELFRVRQEIGSSEDLLCVCAFEPENLWQLYDPIRDLWITIPVLPSRIRHLAHFGAVSTAGKLFVLGGGSDAVDPLTGDQDRNFATNEVWSYDPVIRRWSQRASMLIPRAMFACGVLEGKIVVAGGFTSCRKSISQAEMYDPDNDVWISLPDLHRTHNSACTGVVIGGELHVLHKGISKVQILDSLRLEWRVEEYGWPQGPMAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDRLNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI

Homology

[Close]

BLAST of Cucsat.G17384 vs. ExPASy Swiss-Prot
Match: Q9M1W7 (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-32
Identity = 66/104 (63.46%), Postives = 75/104 (72.12%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           M VV+D LYVM HG +FK  G +  K V SASEF++RIG AM SL DE+ ++GG IGPDR
Sbjct: 250 MVVVEDVLYVMSHGLVFKQEG-DTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGPDR 309

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 105
           LNW IKP SDVD LT G +RP WR  A MTRCRG I GC QL I
Sbjct: 310 LNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352

[Close]

BLAST of Cucsat.G17384 vs. NCBI nr
Match: XP_004140226.1 (F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >XP_031744052.1 F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >XP_031744053.1 F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >XP_031744054.1 F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >KGN47905.1 hypothetical protein Csa_002985 [Cucumis sativus])

HSP 1 Score: 219 bits (557), Expect = 1.38e-68
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR
Sbjct: 244 MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 303

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI
Sbjct: 304 LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 347

[Close]

BLAST of Cucsat.G17384 vs. NCBI nr
Match: XP_008449436.1 (PREDICTED: F-box/kelch-repeat protein SKIP30 [Cucumis melo] >XP_008449437.1 PREDICTED: F-box/kelch-repeat protein SKIP30 [Cucumis melo] >XP_008449439.1 PREDICTED: F-box/kelch-repeat protein SKIP30 [Cucumis melo] >KAA0057314.1 F-box/kelch-repeat protein SKIP30 [Cucumis melo var. makuwa] >TYK13421.1 F-box/kelch-repeat protein SKIP30 [Cucumis melo var. makuwa])

HSP 1 Score: 216 bits (550), Expect = 1.57e-67
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQDSLYVMGHGHIFK+HGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR
Sbjct: 244 MAVVQDSLYVMGHGHIFKYHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 303

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNWH+KPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI
Sbjct: 304 LNWHVKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 347

[Close]

BLAST of Cucsat.G17384 vs. NCBI nr
Match: XP_038886961.1 (F-box/kelch-repeat protein SKIP30 [Benincasa hispida] >XP_038886962.1 F-box/kelch-repeat protein SKIP30 [Benincasa hispida] >XP_038886963.1 F-box/kelch-repeat protein SKIP30 [Benincasa hispida] >XP_038886964.1 F-box/kelch-repeat protein SKIP30 [Benincasa hispida])

HSP 1 Score: 191 bits (484), Expect = 1.44e-57
Identity = 92/106 (86.79%), Postives = 97/106 (91.51%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHG--REPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGP 60
           MAV+Q SLYVM HG IFK+HG  +  KK V+SASEFRQRIGFAMI LRDEIYVIGGDIGP
Sbjct: 243 MAVIQGSLYVMSHGQIFKYHGEAKTVKKVVVSASEFRQRIGFAMIGLRDEIYVIGGDIGP 302

Query: 61  DRLNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           DRLNWH+KPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI
Sbjct: 303 DRLNWHVKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 348

[Close]

BLAST of Cucsat.G17384 vs. NCBI nr
Match: XP_023511586.1 (F-box/kelch-repeat protein SKIP30 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 185 bits (470), Expect = 1.70e-55
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQ SLYVM HGHIFKH G E +K VISASEFRQRIGFAMI LRDEIYVIGGDIGPDR
Sbjct: 243 MAVVQGSLYVMSHGHIFKHDG-EVRKVVISASEFRQRIGFAMIGLRDEIYVIGGDIGPDR 302

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNW IKPTSDVDILTTGGERPTWRHAASMT+C GAIRGCA+LRI
Sbjct: 303 LNWDIKPTSDVDILTTGGERPTWRHAASMTKCCGAIRGCARLRI 345

[Close]

BLAST of Cucsat.G17384 vs. NCBI nr
Match: XP_022963882.1 (F-box/kelch-repeat protein SKIP30 [Cucurbita moschata] >XP_022967369.1 F-box/kelch-repeat protein SKIP30 [Cucurbita maxima] >KAG6571462.1 F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7011226.1 F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 185 bits (470), Expect = 1.70e-55
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQ SLYVM HGHIFKH G E +K VISASEFRQRIGFAMI LRDEIYVIGGDIGPDR
Sbjct: 243 MAVVQGSLYVMSHGHIFKHDG-EVRKVVISASEFRQRIGFAMIGLRDEIYVIGGDIGPDR 302

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNW IKPTSDVDILTTGGERPTWRHAASMT+C GAIRGCA+LRI
Sbjct: 303 LNWDIKPTSDVDILTTGGERPTWRHAASMTKCCGAIRGCARLRI 345

[Close]

BLAST of Cucsat.G17384 vs. ExPASy TrEMBL
Match: A0A0A0KDW8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410600 PE=4 SV=1)

HSP 1 Score: 219 bits (557), Expect = 6.66e-69
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR
Sbjct: 244 MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 303

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI
Sbjct: 304 LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 347

[Close]

BLAST of Cucsat.G17384 vs. ExPASy TrEMBL
Match: A0A1S3BM19 (F-box/kelch-repeat protein SKIP30 OS=Cucumis melo OX=3656 GN=LOC103491326 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 7.60e-68
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQDSLYVMGHGHIFK+HGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR
Sbjct: 244 MAVVQDSLYVMGHGHIFKYHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 303

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNWH+KPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI
Sbjct: 304 LNWHVKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 347

[Close]

BLAST of Cucsat.G17384 vs. ExPASy TrEMBL
Match: A0A5D3CNL2 (F-box/kelch-repeat protein SKIP30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold496G00400 PE=4 SV=1)

HSP 1 Score: 216 bits (550), Expect = 7.60e-68
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQDSLYVMGHGHIFK+HGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR
Sbjct: 244 MAVVQDSLYVMGHGHIFKYHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 303

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNWH+KPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI
Sbjct: 304 LNWHVKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 347

[Close]

BLAST of Cucsat.G17384 vs. ExPASy TrEMBL
Match: A0A6J1HWH7 (F-box/kelch-repeat protein SKIP30 OS=Cucurbita maxima OX=3661 GN=LOC111466917 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 8.24e-56
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQ SLYVM HGHIFKH G E +K VISASEFRQRIGFAMI LRDEIYVIGGDIGPDR
Sbjct: 243 MAVVQGSLYVMSHGHIFKHDG-EVRKVVISASEFRQRIGFAMIGLRDEIYVIGGDIGPDR 302

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNW IKPTSDVDILTTGGERPTWRHAASMT+C GAIRGCA+LRI
Sbjct: 303 LNWDIKPTSDVDILTTGGERPTWRHAASMTKCCGAIRGCARLRI 345

[Close]

BLAST of Cucsat.G17384 vs. ExPASy TrEMBL
Match: A0A6J1HGE3 (F-box/kelch-repeat protein SKIP30 OS=Cucurbita moschata OX=3662 GN=LOC111464058 PE=4 SV=1)

HSP 1 Score: 185 bits (470), Expect = 8.24e-56
Identity = 92/104 (88.46%), Postives = 95/104 (91.35%), Query Frame = 0


Query: 1   MAVVQDSLYVMGHGHIFKHHGREPKKYVISASEFRQRIGFAMISLRDEIYVIGGDIGPDR 60
           MAVVQ SLYVM HGHIFKH G E +K VISASEFRQRIGFAMI LRDEIYVIGGDIGPDR
Sbjct: 243 MAVVQGSLYVMSHGHIFKHDG-EVRKVVISASEFRQRIGFAMIGLRDEIYVIGGDIGPDR 302

Query: 61  LNWHIKPTSDVDILTTGGERPTWRHAASMTRCRGAIRGCAQLRI 104
           LNW IKPTSDVDILTTGGERPTWRHAASMT+C GAIRGCA+LRI
Sbjct: 303 LNWDIKPTSDVDILTTGGERPTWRHAASMTKCCGAIRGCARLRI 345

The following BLAST results are available for this feature:

BLAST of Cucsat.G17384 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1W7	5.0e-32	63.46	F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1...	[more]

BLAST of Cucsat.G17384 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140226.1	1.38e-68	100.00	F-box/kelch-repeat protein SKIP30 [Cucumis sativus] >XP_031744052.1 F-box/kelch-...	[more]
XP_008449436.1	1.57e-67	98.08	PREDICTED: F-box/kelch-repeat protein SKIP30 [Cucumis melo] >XP_008449437.1 PRED...	[more]
XP_038886961.1	1.44e-57	86.79	F-box/kelch-repeat protein SKIP30 [Benincasa hispida] >XP_038886962.1 F-box/kelc...	[more]
XP_023511586.1	1.70e-55	88.46	F-box/kelch-repeat protein SKIP30 [Cucurbita pepo subsp. pepo]	[more]
XP_022963882.1	1.70e-55	88.46	F-box/kelch-repeat protein SKIP30 [Cucurbita moschata] >XP_022967369.1 F-box/kel...	[more]

BLAST of Cucsat.G17384 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDW8	6.66e-69	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410600 PE=4 SV=1	[more]
A0A1S3BM19	7.60e-68	98.08	F-box/kelch-repeat protein SKIP30 OS=Cucumis melo OX=3656 GN=LOC103491326 PE=4 S...	[more]
A0A5D3CNL2	7.60e-68	98.08	F-box/kelch-repeat protein SKIP30 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A6J1HWH7	8.24e-56	88.46	F-box/kelch-repeat protein SKIP30 OS=Cucurbita maxima OX=3661 GN=LOC111466917 PE...	[more]
A0A6J1HGE3	8.24e-56	88.46	F-box/kelch-repeat protein SKIP30 OS=Cucurbita moschata OX=3662 GN=LOC111464058 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006652	Kelch repeat type 1	SMART	SM00612	kelc_smart	coord: 162..209 e-value: 7.0E-6 score: 35.5 coord: 104..161 e-value: 0.02 score: 24.0
IPR006652	Kelch repeat type 1	PFAM	PF01344	Kelch_1	coord: 93..147 e-value: 5.4E-8 score: 32.3 coord: 150..195 e-value: 6.6E-10 score: 38.4 coord: 280..332 e-value: 2.0E-4 score: 20.8
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 61..344 e-value: 9.3E-35 score: 122.0
IPR015915	Kelch-type beta propeller	SUPERFAMILY	117281	Kelch motif	coord: 62..331
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 4..347
None	No IPR available	PANTHER	PTHR24414:SF40	F-BOX/KELCH-REPEAT PROTEIN SKIP30	coord: 4..347

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G17384.T1	Cucsat.G17384.T1	mRNA
Cucsat.G17384.T3	Cucsat.G17384.T3	mRNA
Cucsat.G17384.T6	Cucsat.G17384.T6	mRNA
Cucsat.G17384.T2	Cucsat.G17384.T2	mRNA
Cucsat.G17384.T9	Cucsat.G17384.T9	mRNA
Cucsat.G17384.T10	Cucsat.G17384.T10	mRNA
Cucsat.G17384.T7	Cucsat.G17384.T7	mRNA
Cucsat.G17384.T8	Cucsat.G17384.T8	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding