Cucsat.G16900 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16900
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	UBP-type domain-containing protein
Location	ctg24: 2735496 .. 2737367 (-)
RNA-Seq Expression	Cucsat.G16900
Synteny	Cucsat.G16900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAGACGTAATCTTTACCATTATTTATTTTTCTCTCTGAAATTTTCCATAATGTACTTCTCTTAATTAGAAGCTGCAGAGTCGAAGGTAGTCGTGAAATTCAGTGTGATCATCAATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGGTACCCTAATCAAACTCATTCCTTCATGTTCTCTTTGATTGCCCCAATAATTCCTACTTCTTTTCTATATTTCTATCTATTTATTGAATCGCTGATTTTGTCTAATGTTGTTTTACGTCTTCTCTAGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAGTCAGCTTTTCTTTTCCCTAAACTATGTCTTTAATTCTTATGTTGTTCTTCATCTTAATTTTCGAATGTGTGTACCTTTTCAGTTTCATTTCTATTTCTCCTGAAGGAAGATGTGCTAATTTGATGTTTTGATTCTTTGAGATTTTGCTCCATCAATCGAATTCTTATTGTTTTTGGCTGATAGTTGGTTTAAATCCTCTTTTAGAACTTAAATTTTAATCCCTAAACTTTCATTAAATCCTAATAAGTTAATCGAAATGAATTGAACTCCTGACTTAAATCAAAGTCATGTGGTATTTATTATTAGGCCAACCCATGATATTGATGGTTATCTGAAAGATCAGTCTTTTTAATATGAACAGTAAAGATTTAAAATTAAGTTTTCGGAATGGAGATTTAAAATTAAGTTTTCGGAATGGAGGCTTTTAAGCACAAGATGTTGTCTTTACCACTAAGGCTATCCTTTGAAGTTAGTGTTCCACTGATATCATGCAAAAAAATTGAAGTTCTTCCATTTCAGCTAGACATCTTCTTTCAGTGGCTCTATATCAGTACATTAGATGTTTTATAATCATAACATCCACACCAAAGTCGAGTTCTTTTCTGTCTATTTTTCTATGAATTGTACTTGACGTATTATTTCGTCTAATTTTATAGTGCTTTCAGATGGATTGTCGTGTTTTTATTTGGGCTTATTTCCATGATTTGGATAAACGCATTTCTATTTGGTTTATTAATCCATGGAACAATCTACATATGCAAGATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGGTGAATGTAAAATGGTTCCTTAGATTCTACTCTAATTATGAACATAGGTTTGTGATGTTCATTAATAATTTGCATTTGGAAACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCTCCACCATTTCGATAATATCAATCATCCTGCACTGGGGGAACTGAAATATCTGATTATTAGTGTTATAACTTTTCCAGTCTCTACTTATTAGATGTTTTGATTTCTTGGTCTGTATATGTCAAGCAAATGGCTTATGATCTTCACATGAATTAGGTTGGGTTGTCAAATGTTCATGGTAATTTGGTTGTTCACTTTACAGAAGTGAGGGATAGATTAGAATCTCATATCTTGTTCAAGAAAATTTTAAGAAGCTTTTACTTGAAAATGACAAAATTCTTGTTTCAAACCTTGATGATAACATGAATGAAATTGGTTCCCAACTTTTGTCACTCATCATTTTTCGCAGATGTTGGCG

Coding sequence (CDS)

ATGGCGGAAAAAGCCGGTTCATCTTCTTCCACTTCCAACCCACTGACACTAATAATCGAAGATGAAGTTGAGGAAGAACTTTTATACGGTGCCGGATCGGGATGGGTCCAAGCTCTGACTTCTTGCGATCATCTCGCTTCCTTATCATCCGACCTCGCTCATATTCCGCCCCCTCAGACTCCCTGTAGCCAATGCCAGAATCCCAAGGAGAATTGGGTGTGTTTATGCTGTAAGGATGTCTTTTGTAGTCGTTTTGTGAATAAGCACATGCTTCAACATTATGAGCAATCAACTCATTGTCTTGCACTCAGCTACAGTGATTTGTCAGTTTGGTGTTTCTCCTGCGACGCATATTTAGATGCACAAGTGATTCAGGAATTACGACCAGTACACGAAGTTGCCTACATACTGAAATTTGGCGAGGCTCCACCATTTCGATAA

Protein sequence

MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLDAQVIQELRPVHEVAYILKFGEAPPFR

Homology

[Close]

BLAST of Cucsat.G16900 vs. ExPASy Swiss-Prot
Match: Q9Z2V5 (Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3)

HSP 1 Score: 95.1 bits (235), Expect = 6.9e-19
Identity = 55/144 (38.19%), Postives = 73/144 (50.69%), Query Frame = 0


Query: 1    MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
            + E AG     S  LT    D   +++ Y      V  L+ C HL ++    A       
Sbjct: 1011 LGEAAGGQDMNSLMLTQGFGDFNTQDVFYA-----VTPLSWCPHLMAVCPIPAAGLDVSQ 1070

Query: 61   PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            PC  C   +ENWVCL C  V+CSR+VN HM+ H+E S H L LS  DLS WC+ C AY+ 
Sbjct: 1071 PCKTCGTVQENWVCLTCYQVYCSRYVNAHMVCHHEASEHPLVLSCVDLSTWCYVCQAYVH 1130

Query: 121  AQVIQELRPVHEVAYILKFGEAPP 145
                ++L+ V   A+  KFGE  P
Sbjct: 1131 H---EDLQDVKNAAHQNKFGEDMP 1146

[Close]

BLAST of Cucsat.G16900 vs. ExPASy Swiss-Prot
Match: Q9UBN7 (Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2)

HSP 1 Score: 94.4 bits (233), Expect = 1.2e-18
Identity = 52/144 (36.11%), Postives = 70/144 (48.61%), Query Frame = 0


Query: 1    MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
            + E AG      + L        ++ + Y      V  L  C HL ++    A       
Sbjct: 1077 LGEAAGGQDMADSMLMQGSRGLTDQAIFYA-----VTPLPWCPHLVAVCPIPAAGLDVTQ 1136

Query: 61   PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            PC  C   +ENWVCL C  V+C R++N HMLQH+  S H L LSY DLS WC+ C AY+ 
Sbjct: 1137 PCGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPLVLSYIDLSAWCYYCQAYVH 1196

Query: 121  AQVIQELRPVHEVAYILKFGEAPP 145
             Q + +   V  +A+  KFGE  P
Sbjct: 1197 HQALLD---VKNIAHQNKFGEDMP 1212

[Close]

BLAST of Cucsat.G16900 vs. ExPASy Swiss-Prot
Match: Q20296 (Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 6.4e-17
Identity = 52/147 (35.37%), Postives = 76/147 (51.70%), Query Frame = 0


Query: 2   AEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPP---- 61
           +  +GSSSS++ P   +       E++    +  V  L +C HL     ++  +PP    
Sbjct: 822 SSSSGSSSSSTRPSHNL-------EIMDSGPAHAVVPLATCPHL----KEVKPLPPAKIN 881

Query: 62  PQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDA 121
            +T CS+CQ   E W CL C    C RFVN+H + H+  S+H +ALS +DLSVWC+ CD+
Sbjct: 882 ARTACSECQIGAEVWTCLTCYKYNCGRFVNEHAMMHHLSSSHPMALSMADLSVWCYPCDS 941

Query: 122 YLDAQVIQELRPVHEVAYILKFGEAPP 145
           Y+       L      A+  KFGE  P
Sbjct: 942 YVHNPA---LIGAKSAAHESKFGETMP 954

[Close]

BLAST of Cucsat.G16900 vs. ExPASy Swiss-Prot
Match: Q54QE6 (NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 8.1e-12
Identity = 27/60 (45.00%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 60  TPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYL 119
           T C  C +  ENW+C+ C  V CSR VN H  +H+E + H ++ S+SD S WC++CD Y+
Sbjct: 32  TKCHACNDESENWICMTCGVVSCSRHVNGHAGEHFENTKHPISASFSDHSFWCYTCDTYV 91

[Close]

BLAST of Cucsat.G16900 vs. ExPASy Swiss-Prot
Match: Q9H0E7 (Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.0e-11
Identity = 27/84 (32.14%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 38  ALTSCDHLA--SLSSDLAHIPPPQTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYE 97
           A+ +C H+    L+ D + + P +  C  C   +  W CL C  V C R++ +H L+H++
Sbjct: 3   AMDTCKHVGQLQLAQDHSSLNPQKWHCVDCNTTESIWACLSCSHVACGRYIEEHALKHFQ 62

Query: 98  QSTHCLALSYSDLSVWCFSCDAYL 120
           +S+H +AL  +++ V+C+ CD Y+
Sbjct: 63  ESSHPVALEVNEMYVFCYLCDDYV 86

[Close]

BLAST of Cucsat.G16900 vs. NCBI nr
Match: XP_004152271.1 (histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015084 [Cucumis sativus])

HSP 1 Score: 309 bits (791), Expect = 2.96e-106
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Cucsat.G16900 vs. NCBI nr
Match: XP_008454385.1 (PREDICTED: histone deacetylase 6 [Cucumis melo])

HSP 1 Score: 296 bits (757), Expect = 4.87e-101
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIE--DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LIIE  DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 146
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Cucsat.G16900 vs. NCBI nr
Match: KAA0044348.1 (histone deacetylase 6 [Cucumis melo var. makuwa])

HSP 1 Score: 294 bits (753), Expect = 1.98e-100
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIE--DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LIIE  DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 146
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of Cucsat.G16900 vs. NCBI nr
Match: XP_038904979.1 (histone deacetylase 6 [Benincasa hispida])

HSP 1 Score: 271 bits (694), Expect = 1.72e-91
Identity = 129/146 (88.36%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA++AGSSSS  NPL LI+E+EVEEELLYGA SGWV+ALTSCDHLA LS DLAHIPPP  
Sbjct: 1   MAKEAGSSSS--NPLPLILEEEVEEELLYGAESGWVEALTSCDHLALLSPDLAHIPPPDI 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCS+CQNPKENW+CL CKDVFCSRFVNKHMLQHYEQ THCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSECQNPKENWLCLSCKDVFCSRFVNKHMLQHYEQVTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Cucsat.G16900 vs. NCBI nr
Match: KAG6600290.1 (Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256 bits (654), Expect = 2.17e-85
Identity = 120/146 (82.19%), Postives = 130/146 (89.04%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA +AGSSSS  NP   +IE+EV EE LYGA SGWV+ALTSCDHL SL SDLAHIPPP T
Sbjct: 1   MANEAGSSSS--NPAPCVIEEEVGEEFLYGAESGWVEALTSCDHLPSLCSDLAHIPPPDT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            C +C+NPKENW+CLCCK+VFCSRFVNKHMLQHY+QS H LALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACCECENPKENWLCLCCKNVFCSRFVNKHMLQHYQQSNHSLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146
           AQ+IQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQLIQELRPVHEVAYILKFGEAPPFR 144

[Close]

BLAST of Cucsat.G16900 vs. ExPASy TrEMBL
Match: A0A0A0KT14 (UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE=4 SV=1)

HSP 1 Score: 309 bits (791), Expect = 1.43e-106
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT
Sbjct: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146
           AQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146

[Close]

BLAST of Cucsat.G16900 vs. ExPASy TrEMBL
Match: A0A1S3BZ94 (histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1)

HSP 1 Score: 296 bits (757), Expect = 2.36e-101
Identity = 142/148 (95.95%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIE--DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LIIE  DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 146
           LDAQVIQELRPVHEVAYILKFGEAPPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 148

[Close]

BLAST of Cucsat.G16900 vs. ExPASy TrEMBL
Match: A0A5A7TNA2 (Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00740 PE=4 SV=1)

HSP 1 Score: 294 bits (753), Expect = 9.60e-101
Identity = 141/148 (95.27%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIE--DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60
           MAE+AGSSSSTSN L LIIE  DEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP
Sbjct: 1   MAEEAGSSSSTSNQLPLIIEIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPP 60

Query: 61  QTPCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120
           QTPCSQCQNPKENW+CLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY
Sbjct: 61  QTPCSQCQNPKENWLCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAY 120

Query: 121 LDAQVIQELRPVHEVAYILKFGEAPPFR 146
           LDAQVIQELRPVHEVAYILKFGE PPFR
Sbjct: 121 LDAQVIQELRPVHEVAYILKFGEVPPFR 148

[Close]

BLAST of Cucsat.G16900 vs. ExPASy TrEMBL
Match: A0A6J1D695 (histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 1.22e-82
Identity = 119/146 (81.51%), Postives = 131/146 (89.73%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA +AGSSSS   P   IIE+E EE+L +GA +GWV+ALT CDHLASLSSDLAHIP P T
Sbjct: 1   MANEAGSSSSNLPPC--IIEEEGEEQL-FGAEAGWVEALTYCDHLASLSSDLAHIPTPDT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
            CS+CQNPKENW+CLCCK++ CSRFVNKHMLQHY+QSTHCLALSYSDLSVWCFSCDAYLD
Sbjct: 61  ACSECQNPKENWLCLCCKNILCSRFVNKHMLQHYQQSTHCLALSYSDLSVWCFSCDAYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146
           AQVIQELRPV+EVAYILKFGEAPPFR
Sbjct: 121 AQVIQELRPVYEVAYILKFGEAPPFR 143

[Close]

BLAST of Cucsat.G16900 vs. ExPASy TrEMBL
Match: A0A061E839 (Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641 GN=TCM_007207 PE=4 SV=1)

HSP 1 Score: 239 bits (610), Expect = 9.78e-79
Identity = 108/146 (73.97%), Postives = 129/146 (88.36%), Query Frame = 0


Query: 1   MAEKAGSSSSTSNPLTLIIEDEVEEELLYGAGSGWVQALTSCDHLASLSSDLAHIPPPQT 60
           MA++AG+SSS    L +I+E+E + +L+YGA SGWV+A T CDHLASLSSDLAHIP P T
Sbjct: 1   MADQAGASSSH---LKIILEEEDDYDLIYGAESGWVEARTQCDHLASLSSDLAHIPTPNT 60

Query: 61  PCSQCQNPKENWVCLCCKDVFCSRFVNKHMLQHYEQSTHCLALSYSDLSVWCFSCDAYLD 120
           PC++CQ+P ENW+CLCCKDV CSRFVNKHML+HY+Q+THC+ALSYSDLSVWCF+CD YLD
Sbjct: 61  PCNRCQHPSENWLCLCCKDVLCSRFVNKHMLEHYKQTTHCIALSYSDLSVWCFACDTYLD 120

Query: 121 AQVIQELRPVHEVAYILKFGEAPPFR 146
           AQVI++LRPVHE AYILKFGEAPP R
Sbjct: 121 AQVIRQLRPVHETAYILKFGEAPPHR 143

The following BLAST results are available for this feature:

BLAST of Cucsat.G16900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9Z2V5	6.9e-19	38.19	Histone deacetylase 6 OS=Mus musculus OX=10090 GN=Hdac6 PE=1 SV=3	[more]
Q9UBN7	1.2e-18	36.11	Histone deacetylase 6 OS=Homo sapiens OX=9606 GN=HDAC6 PE=1 SV=2	[more]
Q20296	6.4e-17	35.37	Histone deacetylase 6 OS=Caenorhabditis elegans OX=6239 GN=hda-6 PE=3 SV=2	[more]
Q54QE6	8.1e-12	45.00	NAD-dependent deacetylase sir2A OS=Dictyostelium discoideum OX=44689 GN=sir2A PE...	[more]
Q9H0E7	4.0e-11	32.14	Ubiquitin carboxyl-terminal hydrolase 44 OS=Homo sapiens OX=9606 GN=USP44 PE=1 S...	[more]

BLAST of Cucsat.G16900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152271.1	2.96e-106	100.00	histone deacetylase 6 [Cucumis sativus] >KGN52775.1 hypothetical protein Csa_015...	[more]
XP_008454385.1	4.87e-101	95.95	PREDICTED: histone deacetylase 6 [Cucumis melo]	[more]
KAA0044348.1	1.98e-100	95.27	histone deacetylase 6 [Cucumis melo var. makuwa]	[more]
XP_038904979.1	1.72e-91	88.36	histone deacetylase 6 [Benincasa hispida]	[more]
KAG6600290.1	2.17e-85	82.19	Histone deacetylase 6, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Cucsat.G16900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT14	1.43e-106	100.00	UBP-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G000940 PE...	[more]
A0A1S3BZ94	2.36e-101	95.95	histone deacetylase 6 OS=Cucumis melo OX=3656 GN=LOC103494801 PE=4 SV=1	[more]
A0A5A7TNA2	9.60e-101	95.27	Histone deacetylase 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46...	[more]
A0A6J1D695	1.22e-82	81.51	histone deacetylase 6 OS=Momordica charantia OX=3673 GN=LOC111017700 PE=4 SV=1	[more]
A0A061E839	9.78e-79	73.97	Regulator of Vps4 activity in the MVB pathway protein OS=Theobroma cacao OX=3641...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001607	Zinc finger, UBP-type	SMART	SM00290	Zf_UBP_1	coord: 61..106 e-value: 7.8E-5 score: 32.1
IPR001607	Zinc finger, UBP-type	PFAM	PF02148	zf-UBP	coord: 62..105 e-value: 8.2E-12 score: 45.3
IPR001607	Zinc finger, UBP-type	PROSITE	PS50271	ZF_UBP	coord: 60..106 score: 13.449463
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 36..106 e-value: 5.0E-19 score: 70.0
None	No IPR available	PANTHER	PTHR47665	HISTONE DEACETYLASE-LIKE PROTEIN	coord: 1..105
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 39..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16900.T4	Cucsat.G16900.T4	mRNA
Cucsat.G16900.T5	Cucsat.G16900.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding