Cucsat.G16578 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.CCTAAACTTTTGTATTTGTTTAGTGTATATAGAGAAGTAGAAGAATCACTAATCGTTTCTTTGTACCGTAAGCTGTGTGGTCTCGGAGGGTTGAACTACAATGGGAAGTGGAAGCACAGTCTTACTCAGGAAACTCTTCACGATCCCTAATTTCCTTCCACTCAATCTCTGATTCTTCATCTTTCCTCAACTTTTCTGGTTCCGATTGCGTGTTTTCCCAGCAATATCCATGGATTTCGATGACACCTTACCCATCAGCGAGCGACGAGAGTGGTGCGACGTAACTCCGCTTCCGCAGGACGATGGTCCCAATCCGATTGTGGCGATTGCCTACAAAGAAGACTTCTCTGAGCTCATGGGTTACTTCCGAGCTGTTTATCGAGCAGATGAGCGTTCTCCTCGTTCTCTCCATCTCACTGCGGAAGCTATTGCTATGAATCCTGGCAATTACACTGTAATTTCTTTTACCCTCTTTTTTATTTTTGTGTTTGATGCCTGATTGGATTTATGTTTGGAGTTGGACAAGGACTGGAGTGGATGAGAGTGACTGATGATCTGCTTCGTTTGGGGTCGGGCAATTTCTAAAATTCCAACTTGATGTTTCCTTGACTTGAACTAGCTATTGCAATGTTTATACGGAAAAGGGAGTGTGTTTAGTTATTCAATATTTTGATAATGTATACTACAACTAATGCGTGTTCTTCTCATGCTTCTTAACCTTGAGGCCTTGGTTGGAGTGTTTTTTTATTCTTAGGAGAATCAAAGATTGTGTATTTTGGGCTTTTATGTTTGCTTACTTGTTTATTTGAAAGGATTTTGTACTATTGTTTGGCTAGTTTAGAGAGATTCAAAGAGCCGAAGCATCCCAACTTTTTTGCCATTTCCCAAAGCCAAATGATTTTTACAGGAAAACCTTCCAATTTGCCAAAAGACCAGTTAAGCTAGAATTTGTTAAAGGAGAGAACAAATATTTGTACCAAGTTGAAGCTTGAATAAAACAAACTCATAGATCCTTTCCACAGAGAGGGATTTGCTGTTGGATATTTGGTTGTTCCTTCCGTCCGCAGGAAGCATAAAAGCTCTAACAAGCTGTAACTTGAGAAACTCCGTCTCATCATGTTGAAACGTTTCTTTTCCTCGGATTTGATTTAACAGAAGTTGACTTTGTAGTGTATAAGATGAGTTTGAGTTCCTGAGTGGCTTAGCAAGGATGTGATATCTAGTACTAGTTCTACCTTTTGAACTAATATTTTTAGTTACTTTATTTGTTTCTCTTAGATAGGAGATAATTCCATTGATGATATGAAATGTTACAAAAAAAAAAAAAAAAAAGACCGTCCTGTGAAGTTACAAAAAAATTTCTACAGTTTATCAATATTATGGTTGCAAAAAGGCAAAAGATTTTACAGCAATAAGAATCCGTAAAGATGGTGTATCCAATAATTCCTCTGGGCTTCTTTCTTTGTCATGAAAAATCCTTTGATGTCAATTAATTATTACATTTAGTGGTGCAGCACTTGTCAATTCAGCCTTATGAACTAAATTCAAACTTCAATTTATTTTATTAAAAGCCTGTAGACTTTTTAATTCAACCTAAATACAGATCATTCTAAAACCTACGCTTGTTGTAATGTGCTTTGATATAAGGTCGTTCATTTACTTTTACCTTTATAAGTCAGTAAATGAAGTTCTTTCTTCTATGTAGGTTTGGCATTTCAGGCGTTTGATACTCGAGGCTCTTAATGTTGATTTGCATGATGAACTAAATTTCCTTGACAACATTGCTGAGTCTAACACCAAAAACTATCAGATATGGTCAGCCTAATGTTTGAATTAATGAGCTTGAAGTTTTTCTTTTCTTTTCTAAATTTTAATCTTTTGATTGATATTAAAGATGTGTCTATAATAAAGAAGACTGTTTGTTTACTGTTTATTCATACTTAATTTATGAAAGCACTGTAGCTTTTTCCTTATGTTAAGTTATCTCTTATCAGTTTATCATCAAAACAAATTTAATATTTGAGCTTTGGCAGATTGGAGCATGTGCTATTCTGTGGGGTTTTTAGATGTGAGGTGAAAGAAAGAATAGAATCTTTAGGGGAGAGAGATTTCATCCCGTGATGTTTGGTCCCTTGTTAGATTCTCAGTTTTCCTTTGGGCATCAGTGTTTAGGCATTTTTGTAATCATACACTAGGTGTCATTTACATGATTGAAGCCCCTTTAATGGGCTGTTTGGAAGATAGTAATGGGATGAGTCTATATTGTATGTAATCTAAAATTCACGTTAGGATTGTGTGTTTTAGGGTTGATTTGTAATACTAAATTCATTTTGTTCCAACAATTCTCAACCCAATCCACTTTTCTACTGTTTTGACGCTTCACAATCCCATTTTTGTTCTATCCATGATTCCTCAAGCATCCCAACACCCATCAATTCCCAGTAATCTAATTACATTCCAACTTTCCAAATAGCTTCTAGTGTAGTTGGTTCCCTTTTTATGGGCTTCTCATATTTTGTATGAGTGGCAGTGGCAACAAACAGTAACGAAGAGGAGGGACTATCATTATGGAAAGTTCTTTGTGGAAAGGCAGAAGTCAGGGTAGACTGCTAAGAAAGCTTGGAAAGGTTTTACCCTCATGATGAATGGTCAAGATTTTCAAATGTCGTCGGACATTATATTTATGATCTACTTGTTCTTTTCATCCTCTCTTCCGTCAGAATAGGCCTGCATGAATCTTTATGAAATATCTTTGCAGGCATCATAGGAGATGGGTTGCTCAGAAACTGGGAACTGATGCTGCAAACAAAGAGCTTGAATTCACCAGAAAGATTATCTCCCTTGATTCCAAAAATTATCATGCTTGGTCTCATAGACAGGTTTGATCTCCAATCTACTACCATTTGTTATTGTATTTTAATCTATGCAATGTAATTTGTTTCCCATCCAGACCTTAGTGACACGGTTTATTTAATTATAATGCAGTGGGTTCTTCAGGCACTGGGTGGATGGGAAGATGAACTTGACTATTGTCACGAGCTTCTAAAGGAAGATGTTTTTAATAATTCTGCATGGAATCAGGTTAGCGCATACTTCATATCTGCTCCTTGCTCCTTGAGTTTAATCCAAATAGCTGGAAAAGGAAGTATTTTTTTGATGTGGAGGCGCTTCATTAGGAATATGTGCAGAGTTGGGTGGTTAAAAATAGTGTTTTTGGCATAAGATGAAGATAAGTTTGTGAAAGTTAGGTGGTTCAAATTTCCAAATATAGTAACTTAGGCAGAATTCTTTTCCCCTTTCTTTTTAATAGTTATTTAGAAATAATAACCTTTTCATTGAATGGTGAAATCTTTTTATTTATTATTTTTATTTTAAAAAAGAAATCAAGCTTTCATTGAGCAAAGTAAAAGGCGTTAGCTTGCTCCAAGATCTAAGAGAAAAAAAGTCAATAAAAAGATGTTAACTCATGCTTCACATTATTGTAGAGGCGACTGTTTCTTTCAATTCTTCTAAAAAAGGGACAAACACATATTTCAAGAAACAAATTTATCTGGAGCGACAGAGAAACCCTGGTGTCAATGACTTCACTGTCTTGTTTCTACTAAAAATTTTGTGTGAGATATTGAATGGAGGAGTCAGGGATATAACTAAAATCTTTCCGCTGAACTTGTAATTACTTTATTATTTTCATCCTCTAGTTTTGGTAAGTATCTTGAATTCTTTCTGACATGGTTGGCGTCTAATTTCTGTTTGACACATAATCTTCTTTCATAAGAAATCTTAAATAACGATATACCTCAAGTTAATCTCTTTCAGAGTATTAGTTTAATCCTTCTTGCACTTTTTTGTTTGTGGTAGAGATACTTTGTCATAACCAGATCTCCCTTACTGGGTGGCCTAAAATCCATGCGAGAATCTGAAGTGAATTATACTGTTGAAGCCATTCTTGCTCATCCTGAAAATGAGAGTTCTTGGAGATATCTGCGCGGACTTTATGCCGGTGACACACAGTCATGGATTATTGCTCCTCAAGTTTCTTCAGTCTGTTTGAAAGTTTTGGGAAGTAGAATTAACTTTGTGTTTGCTTTGAGCACCCTGTTGGATCTTCTCTCCCATGGTTTCCCGTCAACCCAAGCGTTCAGAGATGCTGTTGATGCTTTGAGGGTACCAGACGACAATCAAACAGATTCCAACCTAGCCAAAACTGCATGTTTAATCTTGGAACGTGTTGATCCAATCCGAGTTAACTATTGGCTCTGGCAGAAGAGTAAGCTTCCTCAGTAACAAGTTCAATTCATCAGCTCATTTTAGCCATCCTCAAGGTTCATTTTAATGTTCACTGTTGAGAATTGGATTCAACATCCACAGTTTTTTGGTGACCAAATCTTGAGAATAGTACTCTGCCACTAAAGATAACTCTCTAATTCAACGTGATTGACAAAAGAATTAAAAAGAAAAAAGAAAAACTCTTTTGCTAGATGGCAAGCCACTGTCTATTTCGCTTGTATACTGAAAACAGGTAATATCAAACCAAGTTTTGTACATTCAATATCTTTATAATTCTTTCGCAATTTGTACTTGTGTATATTATGCTGCTATATACCCCGAGAATGATTAAATTAATATTAATATCGGGTATGATATATTTGATATTATGACTTTTTTTCCCAGACAGGTTTATTTGTATGTGGCATTGCAAAAATAGGTAAGAAAATTTAAAAAACACGA ATGAAATATCTTTGCAGGCATCATAGGAGATGGGTTGCTCAGAAACTGGGAACTGATGCTGCAAACAAAGAGCTTGAATTCACCAGAAAGATTATCTCCCTTGATTCCAAAAATTATCATGCTTGGTCTCATAGACAGTGGGTTCTTCAGGCACTGGGTGGATGGGAAGATGAACTTGACTATTGTCACGAGCTTCTAAAGGAAGATGTTTTTAATAATTCTGCATGGAATCAGAGATACTTTGTCATAACCAGATCTCCCTTACTGGGTGGCCTAAAATCCATGCGAGAATCTGAAGTGAATTATACTGTTGAAGCCATTCTTGCTCATCCTGAAAATGAGAGTTCTTGGAGATATCTGCGCGGACTTTATGCCGGTGACACACAGTCATGGATTATTGCTCCTCAAGTTTCTTCAGTCTGTTTGAAAGTTTTGGGAAGTAGAATTAACTTTGTGTTTGCTTTGAGCACCCTGTTGGATCTTCTCTCCCATGGTTTCCCGTCAACCCAAGCGTTCAGAGATGCTGTTGATGCTTTGAGGGTACCAGACGACAATCAAACAGATTCCAACCTAGCCAAAACTGCATGTTTAATCTTGGAACGTGTTGATCCAATCCGAGTTAACTATTGGCTCTGGCAGAAGAGTAAGCTTCCTCAGTAA MKYLCRHHRRWVAQKLGTDAANKELEFTRKIISLDSKNYHAWSHRQWVLQALGGWEDELDYCHELLKEDVFNNSAWNQRYFVITRSPLLGGLKSMRESEVNYTVEAILAHPENESSWRYLRGLYAGDTQSWIIAPQVSSVCLKVLGSRINFVFALSTLLDLLSHGFPSTQAFRDAVDALRVPDDNQTDSNLAKTACLILERVDPIRVNYWLWQKSKLPQ Homology
BLAST of Cucsat.G16578 vs. ExPASy Swiss-Prot
Match: O24304 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Pisum sativum OX=3888 GN=FTA PE=1 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 9.0e-36 Identity = 72/125 (57.60%), Postives = 99/125 (79.20%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy Swiss-Prot
Match: Q9LX33 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Arabidopsis thaliana OX=3702 GN=FTA PE=1 SV=2) HSP 1 Score: 135.6 bits (340), Expect = 3.9e-31 Identity = 70/124 (56.45%), Postives = 85/124 (68.55%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy Swiss-Prot
Match: P93227 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Solanum lycopersicum OX=4081 GN=FTA PE=1 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27 Identity = 67/121 (55.37%), Postives = 76/121 (62.81%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy Swiss-Prot
Match: Q54RT9 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Dictyostelium discoideum OX=44689 GN=fntA PE=3 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 9.1e-04 Identity = 33/114 (28.95%), Postives = 48/114 (42.11%), Query Frame = 0
BLAST of Cucsat.G16578 vs. NCBI nr
Match: XP_004152103.3 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis sativus] >KAE8649109.1 hypothetical protein Csa_015204 [Cucumis sativus]) HSP 1 Score: 255 bits (651), Expect = 1.01e-82 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Cucsat.G16578 vs. NCBI nr
Match: XP_008453985.1 (PREDICTED: protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis melo] >KAA0044591.1 protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis melo var. makuwa]) HSP 1 Score: 243 bits (620), Expect = 5.04e-78 Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0
BLAST of Cucsat.G16578 vs. NCBI nr
Match: TYK16993.1 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Cucumis melo var. makuwa]) HSP 1 Score: 241 bits (615), Expect = 7.73e-77 Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 0
BLAST of Cucsat.G16578 vs. NCBI nr
Match: XP_038900826.1 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Benincasa hispida]) HSP 1 Score: 232 bits (592), Expect = 8.77e-74 Identity = 112/125 (89.60%), Postives = 118/125 (94.40%), Query Frame = 0
BLAST of Cucsat.G16578 vs. NCBI nr
Match: XP_022145198.1 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha [Momordica charantia]) HSP 1 Score: 216 bits (549), Expect = 2.73e-67 Identity = 106/125 (84.80%), Postives = 114/125 (91.20%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy TrEMBL
Match: A0A0A0KW41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G015150 PE=3 SV=1) HSP 1 Score: 255 bits (651), Expect = 2.23e-83 Identity = 125/125 (100.00%), Postives = 125/125 (100.00%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy TrEMBL
Match: A0A5A7TSR3 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003410 PE=3 SV=1) HSP 1 Score: 243 bits (620), Expect = 2.44e-78 Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy TrEMBL
Match: A0A1S3BYS8 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucumis melo OX=3656 GN=LOC103494543 PE=3 SV=1) HSP 1 Score: 243 bits (620), Expect = 2.44e-78 Identity = 119/125 (95.20%), Postives = 121/125 (96.80%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy TrEMBL
Match: A0A5D3CYK3 (Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G001350 PE=3 SV=1) HSP 1 Score: 241 bits (615), Expect = 3.74e-77 Identity = 118/124 (95.16%), Postives = 120/124 (96.77%), Query Frame = 0
BLAST of Cucsat.G16578 vs. ExPASy TrEMBL
Match: A0A6J1CVB2 (protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha OS=Momordica charantia OX=3673 GN=LOC111014704 PE=3 SV=1) HSP 1 Score: 216 bits (549), Expect = 1.32e-67 Identity = 106/125 (84.80%), Postives = 114/125 (91.20%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|