Cucsat.G16561 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16561
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	protein YIF1B
Location	ctg24: 693775 .. 697964 (+)
RNA-Seq Expression	Cucsat.G16561
Synteny	Cucsat.G16561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCAAAGTTCACCTTCAGATTCAAAGACTCCAAAAAAGAAAAGAAAAAAAAGGGAAAAATCTGCTTTGCTCGCTTTCTTCTCCCCTAAGCGCGGCCTTCGCCGGAACCCTTTCGACCTCTCTTCCACCGCCTCCACTGCGAAGCCCTCGCTCCCCGCCCCCCGCCCCTTCTTCCTTTTTTTTAACCTTCACCCACTTGATCTTCGACTCGCTCGTCTTTCTTCACAGGTTCCTCTTTTGTTTTTCTTTAGTACTCCATCATATTGTTTTTTTTATTTGAATCTGGAAAGCACGGCGTGTTTAATTTCGCGAAATTACGAAGAAATTGTTACTTGCGTCTTGTGATATGAGCTATTCATTTGCCTTTGGTTTCTATTCCCCTATCGAGCTTGAGAATTGAGATCTTATCCTAGTGTTGGGACAGCTTCTTATTACTCTAGGATCAATGATTCGTTCCTCGTGACTTCAAAGTTTTTGTGTGGAAATTGAATTCTGTGGCGTGATTTATGATCTGATTCGGTTCTGGAAATGGTTAATGTTGGTGGACCTTTTCTTTTTCTTATTTTTTCTCTTTACAATTTTAGCATTTATAAGAGCTGAAATTAGTTATGGGGACTTCTTGGGATTTGAAATGGTTGAAGGAAATGATGATTTTTCCCTGCAAATGTTCTAACTTCTAAGCGAATCCCCATTGAGAGTCATGTTCTTAACGTCATGATAGGGAACAAGTAATCAAGTTGAGGCTTAGTTGCAATGATGCTTGCATTTTGGAGTTCTATTAACACCAATATAGCCTGTTCGTGAAAATATATATTTTTCAATGTGGGTTCATCCTTTATTTTCTCAATACATAAATCACGTTGATTTGAAATGAAGTAAAAAGAAAACTTCTTATGTGATTCAAGTATCGTGCTCCTTTTTTATGAGGAATTCTTTTATTCGATTCATATGCAGGAATGTATAATAATGTTGAAGCCCAGCCCGCAGCTCCGAAGCCTCCAGCAAGCTCTCAGCCAAATCCATTTGGAAATGCATTTTATGGTGCTGGATCTGGACTAATTCGAGGTGGATTGGGTGCATATGGAGAGAAAATATTTGGGTCAAGCTCAGAGTATGTTCAAAGCAATGTGAGTACTATTTCCTATGTAAATTTATCACCAACCAAGATTTCTATTTTACTTTTACTTTTATTTTTATTTTTATAGGAATATAACTTTCATTGTGAAAATTTGAAAGAATACCAGGGCATAACAAACATTTTTTTAACAAATATAAATGTAGCGTTTTTCCTTATTTCTCAATTGGGGTGGTTTTTCTGCAATACAAATGGGGAGAGGATGGGAAAGATTATTATCTTTTTACCTAATCAATGAAAACATTGAGGAAGATTAACGATAAAAATTTTTGTATATATTTTTTTTGAACAAGGAGCGAACTTTTCATTGATAGATGAAAAGGAAAAAAAAAAAAGAATTCAGGTGTACGACCTCCCAAATGGAGAGAGTAAACTACCTAGGAAACAACAAAACACCAAAAATACAAGAGCCTAAAAAAACAACTGAAAAGAGGACTCCAATAGGCCAAAACACCAAACCAAACAGCAAAAACCACACCATAATGGCACAAAAGAGAGAGACTTCAAGTAAGAAGACTGAAATATCATTATGCTTCCCATACATTACTGTTATCTTTATCTCCTTCCAAGATGATGTAAATGACTCTCTTTCATTGTTAAAACCTTGCAAGAAGGATGAAGACCTTTTAACAATTGGGGGCTTTGAAATTCTTAAGCTTGTGCCTAAACTTTTTGGTTCTCAGATGACTGAAGGAATTTAGCTTCTTCTTCTTCTTTCTAATTTTTTTATTTAAATTAATTAATTATGATTTTTTAATTATTATTATTGCGATGGACAGATAAGTAGGTACTTTTCAGATCCCCAATACTACTTCCAAGTGAACGACCAGTATGTTAGAAATAAATTGAAGGTTGTCCTATTTCCATTTCTACACAGGGTATGTACCAGTCTTTTAATTTCTCCCTTGATGATTTTTGTTGTCCTTACTCACTCCTTACTCTATGAAAGAATACCCTTATCGTCTTGCTTTTTTTTCAGGGCCACTGGACACGAATAACTGATCCAATTGGGGGCAGACTATCGTATAAGCCACCAATTTATGACATCAATGCACCAGACTTGTACATTCCATTCATGGCCTTTGGCACCTATGTTGTTCTTGCAGGCTTCTCACTTGGTCTTCAAGGAAAGTGAGTGCAAATACGTTTTTGGTGTACCATTATTATAACCTTTTATTTTAAAGATGAGACTATAATTTCATGCCCCTCCCCCCCTGCCCGCAAAAAAAACCCAACTGTTAGTTTTTTTTTTTTTTTTGGGATAGGGAGCAGATTATGAAATGAGGTTTTTATAGGTTAGTGGTTGTGGTTACTTCATGGGGTTCAAAATCAACATGCATTCCTAGGGAGAAGCGGTGTTAGGATTTGGACCTCAATCCTTCTAGGGGTTTCTCTTGCAATTATTTTTTGTCTACTCCTTCTCCACAAGTAGCCTTTGATTGGTTGCTTTGGAGCTGTGGGTTTGCGATGTTTTTGTGGAGCCACTTTTTTGAGGAGTTTGGTTTGGTGCATGCTTGTGAGAGGGATGCTAAAGACTTGATTGGGAGTTCCTCCTCAATTCTCTTTTTCTTGAGAAGGGATGGTTCTTGTGGCTTGCTGGGGTGTGCACTCTGTTATGGTATATTTGGGATGATAATAATATTGAAGTCTTTTAGGGGTGTGGGAAGGGACCCGTGTGATCTTTGGTGCTTGATGAGGTTTGTTTTTCTTTGGGGTTTGGCATTTTAAATTATTAGGCAGTATTGAACTTAGTTGGATCCTTTTTTTCGTTTGGGGGGGGACTTGGTTTTTTAGCATGCCCTTATTTTCTTTTTGGAATGGGAGTAGTTCCTATTGAAAAAAAACCCATGAATTGTCATCGAAGGCACTCTTCAATCCATGTACTCACAATAGTAAATTATTTGTAGTCAGTAGGGGGGAGAACCTTGATTATATGCCTTGGGCTTGCGAGTATAATCAATATCTCTTGAGACTCATGAGCTTGTTTGGTTTATGTTGGGGCCAAAGTAGAGAGCGTAGATTTACGGTGGAGGTGGAGGTGGTGTGCGAATTCTTCATTTTGGAAGAAGGGTAAAATGTTGTTGCACGCTAGTTTCTTTTGCTATTCTCTGAGACATTTGTCTTGAGAAGAATAGTATGATATTTAGAGAGATGGAGAAATTACACAAGATTATTTTGTATTTAAAATCCTCTATTAACTAATCATTGGAGGGCTCTCATTTCTTAGTTTTGCGGGAGGGGGTTTTCTCAACCCTCTGCCCTTAGGTTGTTCTTTTTGGTTCTTTTGATGAATAAGCATCTCCGTTTCTTATATGTAAAAAAAGAACAGAGCTGAGAGATTAAGTGAGGATGATTGAGAGGCTGCAAGATTTAATGTCTCTTTGTGGGAATCACTTGAATGACTTTATTTAATTAAGCTAATTTTTATTTAGTTGGATTTATTCTTTTTGCGGGTTTAGACTTCATTTATCTCTTCTCGCCCTTGTTTATGCTTTCATTTCTCCCAATGGAAGCTTAATTTATTACCTATTTTTTTAAAACCTTCTTGGAACCAAAGTCTTATTGGATGAGAGAAACTAGACAAGATAAGATGGAGAAAGAGAAACCAAAAGAGCTTGAAGGATTAGGATTCCATAAGCGATCATTCTAGATGCACTAAAAACTATAACCTCAAAAATAAAGAGATCAAGGAAGAAACATTTGAACTTTGCTTTTTCTAAGCTTCCCTATAAAGAGAAACCAAAAGAGCTTGAAGGATTAGGATTCCATAAGCGATCATTCTAGATGCACTAAAAACTATAACCTAAAAAATAAAGAGATCAAGGAAGAAACATTTGAACTTTGCTTTTTCTAAGCTTCCCTATTTGATAAGCCTTAAACTATATTTGAAAAAGTGGAACGAAGACTACAGTCATGGAATCACTTACACATTTCCAAAGGCAGTCATCTTACCCTTCTACTAGCCACAAAATTTCCTACATATTGTTCCTATACAAGATCCTCACCAAGGTTAGTACTATCATAGAAAAACCATACAGATCCTTTTTGTGAAAAAGGGGTAACAACCAAAATGGGATGAATCTTGTTAGATGAGACAAAATTATCAAGCCTCTCTCACATGGTTGACTGGGCATACAAGGCATTGGAGACAAAAACAGGGCTCTTCTTCCTAAATGGATTTCAGGATACTACCACAAAGGAGTTGCTTTATGGAAACAAATATTATTGATGCTAAAATATGGTGAGCATACTGACTCTTCTTGGCCCAACACTTCTTTCCCAGATCATATTGAAGGTCCATGGAGAACCATCCTGTCTCATTTAAACCTTATCGAAGAGAGGGTTTCTATCAAAGTTGGGAATGGCAACCGTGCCTCTTTTTGGCATAACCATTGGATCAATGAAGCCCCTATATCGAACCTTTTTCCTCGACTATGCACTTTGGCTGCATACAAGCAGTCCACTGTGAACAATTTTTGGGATGAACAACATGGATGGACATGGACCATCACCTACAGAAGGAACTTCAAAGAAGATGAATTTGAAGAATGGATGGCTCTCGTGTTCTTGATGGAGTTTGGTTGGCCTCCCGGAGAGAAATGAATTTGGAATCTTGATAAAAATGGTCTTTTCTCCACTAAATCATTGGCCAACAATTTGGGGCTGAGGGGGCTGCACCGAACACCTTCCTTATGGACGTGATGCTATATGGACGGATTTCTACCTAAAAAAAGTTCAATTCTTTCTCAAGGAAATTAGTCACAAATGGCCAACATGAGCTCAATTCAACTTGCATCTGTATGCTCCCGAGGACAAGAGGTCCCTGATTGAAATCCCTCCACCTTCAAATTGACTTAATAAGACCTTTTCAATACAAAGCATCCAGAGACAGTAGTAACTGCAGTCATCAACTCTTGCTTTGTCTTTAAAAAACCACACCCTATGTCGTTAACAACTCCCTTCGAATAGGTTGGATGGTGAGGCAGATTGCCTTGGGTAACTTATCCTGTAATTTCCACTGTGTCATCAGCAATTATTTATGAATTTGATACTGATTGTTTCTGATTATATTTGTGATGTGCACGTCTGCTGTTAATGTTTATTCTCATACGAGATGTATCATCAATGCATATAAAAAGGAGTAACCAACCCAAATGAATGTTCAAGTTTCAGGAATAATTCTCACGATTTCTCGATGTATGCTATATATAATATACAAATGTTTCTTTTTAACGAAATCATCATTTCTATTCTTGCATGTTTAGTATAGTAGATTATGATTTCTCTCCCCCTCTGGGATGCTCGACGAATTTGTTTCACTCTCAAACTTTGATCTGCTCATATTTGTCAGAAACCCATCTATAGCATATCTCAACTACAACTACCTACTCACACAAAATCATTCATTTCCTATAATGATCATTAATTACTATCATTTTCCTATAATGATTGTAGGTTCACTCCAGAAGCTTTGAGTTGGTTGTTCATCAAAGGATTGCTCGGTTGGTTTATGCAAGTCATGCTGCTTAAAGTAACACTACTATCACTGGGAAGTGGGGAGGCACCATTACTCGATATTGTTGCATATGCTGGATACGCGTTCACCGGACTGTGTCTGGCTGCCATCGGAAGAATATCGTTGAAATACTCGTACTATTTTCTTATGCCATGGATGGCCTTGTGCATGGGAATATTCTTGGTGAAAACGATGAAGAGAGTGCTATTTGCAGAGGTGAGGACCTATGATTCAAGCAGGCATCACTATCTATTGCTCTTTATTGCTTTGGCTCAGTTCCCACTTTTCACTTGGCTTGGTAACGTTAGTGTCAATTGGCTTATATAAAATGGAATGTTTCTGTACCTTTTTTTTTTACAATTAGGAGCATGTTCTTAGCCACTTTTAGATGTAACCAAACCTTATGAGAAGAGATTGCAAATAACTGCTTCTGTGCTTCTAGTTTTACCATTGTAAATTCTTTTATTGGTTTCTTCAACTGTTGATTAGAGTTTCAATACATTTCTTTTTAACATCCTTGAAGAATTAGGGGTTTTCTTGTATTCATTTACTTCAATTGTTTATGATAGACAAGTGTGATGGCTTCTTGCTGGGTGGTTTGAAACTAATATGTTTTATATTTATTTGTGTTAAATTACAGCTCTAATTTTCAAATTTTATAATTTG

Coding sequence (CDS)

ATGTATAATAATGTTGAAGCCCAGCCCGCAGCTCCGAAGCCTCCAGCAAGCTCTCAGCCAAATCCATTTGGAAATGCATTTTATGGTGCTGGATCTGGACTAATTCGAGGTGGATTGGGTGCATATGGAGAGAAAATATTTGGGTCAAGCTCAGAGTATGTTCAAAGCAATATAAGTAGGTACTTTTCAGATCCCCAATACTACTTCCAAGTGAACGACCAGTATGTTAGAAATAAATTGAAGGTTGTCCTATTTCCATTTCTACACAGGGGCCACTGGACACGAATAACTGATCCAATTGGGGGCAGACTATCGTATAAGCCACCAATTTATGACATCAATGCACCAGACTTGTACATTCCATTCATGGCCTTTGGCACCTATGTTGTTCTTGCAGGCTTCTCACTTGGTCTTCAAGGAAAGTTCACTCCAGAAGCTTTGAGTTGGTTGTTCATCAAAGGATTGCTCGGTTGGTTTATGCAAGTCATGCTGCTTAAAGTAACACTACTATCACTGGGAAGTGGGGAGGCACCATTACTCGATATTGTTGCATATGCTGGATACGCGTTCACCGGACTGTGTCTGGCTGCCATCGGAAGAATATCGTTGAAATACTCGTACTATTTTCTTATGCCATGGATGGCCTTGTGCATGGGAATATTCTTGGTGAAAACGATGAAGAGAGTGCTATTTGCAGAGGTGAGGACCTATGATTCAAGCAGGCATCACTATCTATTGCTCTTTATTGCTTTGGCTCAGTTCCCACTTTTCACTTGGCTTGGTAACGTTAGTGTCAATTGGCTTATATAA

Protein sequence

MYNNVEAQPAAPKPPASSQPNPFGNAFYGAGSGLIRGGLGAYGEKIFGSSSEYVQSNISRYFSDPQYYFQVNDQYVRNKLKVVLFPFLHRGHWTRITDPIGGRLSYKPPIYDINAPDLYIPFMAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDIVAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRHHYLLLFIALAQFPLFTWLGNVSVNWLI

Homology

[Close]

BLAST of Cucsat.G16561 vs. ExPASy Swiss-Prot
Match: Q6GN58 (Protein YIF1B-A OS=Xenopus laevis OX=8355 GN=yif1b-a PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-08
Identity = 45/154 (29.22%), Postives = 80/154 (51.95%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPE--------ALSWLFIKGLLGWFMQVMLLKVTLLSLGS 60
           MAF TY+++AG +LG Q +F+PE        AL+WL ++ L       +LL + L+++ +
Sbjct: 148 MAFVTYILVAGLALGTQSRFSPEILGMQASSALAWLIVEVL------AILLSLYLVTVNT 207

Query: 61  GEAPLLDIVAYAGYAFTGLCLAAI-GRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAE 120
            +   +D+VA+ GY + G+    I G +  K  YY ++ W  + +  F+++T++  + +E
Sbjct: 208 -DLTTVDLVAFTGYKYVGMISGVISGLLFGKTGYYIVLAWCCISIVFFMIRTLRLKILSE 267

Query: 121 -------VRTYDSSRHHYLLLFIALAQFPLFTWL 139
                  VR   +    YL + IA  Q     WL
Sbjct: 268 AAAEGVLVRGARNQLRMYLTMAIAAVQPIFMYWL 294

[Close]

BLAST of Cucsat.G16561 vs. ExPASy Swiss-Prot
Match: Q5BJH7 (Protein YIF1B OS=Homo sapiens OX=9606 GN=YIF1B PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 44/149 (29.53%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWF---MQVMLLKVTLLSLGSGEAPL 60
           MAF TYV++AG +LG Q +F+P+ L  L     L W    +  +LL + L+++ + +   
Sbjct: 162 MAFITYVLVAGLALGTQDRFSPDLLG-LQASSALAWLTLEVLAILLSLYLVTVNT-DLTT 221

Query: 61  LDIVAYAGYAFTGLCLAAI-GRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAE----- 120
           +D+VA+ GY + G+    + G +  K  YY ++ W  + + +F+++T++  + A+     
Sbjct: 222 IDLVAFLGYKYVGMIGGVLMGLLFGKIGYYLVLGWCCVAIFVFMIRTLRLKILADAAAEG 281

Query: 121 --VRTYDSSRHHYLLLFIALAQFPLFTWL 139
             VR   +    YL + +A AQ  L  WL
Sbjct: 282 VPVRGARNQLRMYLTMAVAAAQPMLMYWL 308

[Close]

BLAST of Cucsat.G16561 vs. ExPASy Swiss-Prot
Match: Q6P301 (Protein YIF1B OS=Xenopus tropicalis OX=8364 GN=yif1b PE=2 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 45/154 (29.22%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPE--------ALSWLFIKGLLGWFMQVMLLKVTLLSLGS 60
           MAF TY+++AG +LG Q +F+PE        AL+WL ++ L       +LL + L+++ +
Sbjct: 148 MAFITYILVAGLALGTQSRFSPEILGMQASSALAWLIVEVL------AILLSLYLVTVNT 207

Query: 61  GEAPLLDIVAYAGYAFTGLCLAAI-GRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAE 120
            +   +D+VA++GY + G+    I G +  K  YY ++ W  + +  F+++T++  + +E
Sbjct: 208 -DLTTVDLVAFSGYKYVGMISGVISGLLFGKTGYYVVLSWCGISVVFFMIRTLRLKILSE 267

Query: 121 -------VRTYDSSRHHYLLLFIALAQFPLFTWL 139
                  VR   +    YL + IA  Q     WL
Sbjct: 268 AAAEGVLVRGARNQLRMYLTMAIAAVQPIFMYWL 294

[Close]

BLAST of Cucsat.G16561 vs. ExPASy Swiss-Prot
Match: Q9CX30 (Protein YIF1B OS=Mus musculus OX=10090 GN=Yif1b PE=1 SV=2)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 43/149 (28.86%), Postives = 80/149 (53.69%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWF---MQVMLLKVTLLSLGSGEAPL 60
           MAF TY+++AG +LG Q +F+P+ L  L     L W    +  +LL + L+++ + +   
Sbjct: 159 MAFITYILVAGLALGTQDRFSPDLLG-LQASSALAWLTLEVVAILLSLYLVTVNT-DLTT 218

Query: 61  LDIVAYAGYAFTGLCLAAI-GRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAE----- 120
           +D+VA+ GY + G+    + G +  K  YY ++ W  + + +F+++T++  + A+     
Sbjct: 219 IDLVAFLGYKYVGMIGGVLTGLLFGKIGYYLVLAWCCVSIFVFMIRTLRLKILAQAAAEG 278

Query: 121 --VRTYDSSRHHYLLLFIALAQFPLFTWL 139
             VR   +    YL + +A AQ  L  WL
Sbjct: 279 VPVRGARNQLRMYLTMAVAAAQPVLMYWL 305

[Close]

BLAST of Cucsat.G16561 vs. ExPASy Swiss-Prot
Match: Q6PC24 (Protein YIF1A OS=Danio rerio OX=7955 GN=yif1a PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.2e-08
Identity = 40/121 (33.06%), Postives = 68/121 (56.20%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPE--------ALSWLFIKGLLGWFMQVMLLKVTLLSLGS 60
           MAF TY++LAG +LG+Q +F+PE        AL W+ I+ L      VMLL + LL++ +
Sbjct: 154 MAFITYILLAGMALGIQKRFSPEVLGLCASTALVWMIIEVL------VMLLSLYLLTVHT 213

Query: 61  GEAPLLDIVAYAGYAFTGLCLAAI-GRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAE 113
            +    D+VAY+GY + G+ L    G +     YY  + W +  +  F+V+++K  + + 
Sbjct: 214 -DLSTFDLVAYSGYKYVGMILTVFCGLLFGSDGYYVALAWSSCALMFFIVRSLKMKILSS 267

[Close]

BLAST of Cucsat.G16561 vs. NCBI nr
Match: XP_004152088.1 (protein YIF1B [Cucumis sativus])

HSP 1 Score: 287 bits (735), Expect = 7.12e-96
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. NCBI nr
Match: XP_008453934.1 (PREDICTED: protein YIF1B [Cucumis melo] >KAA0044629.1 protein YIF1B [Cucumis melo var. makuwa] >TYK16959.1 protein YIF1B [Cucumis melo var. makuwa])

HSP 1 Score: 285 bits (728), Expect = 8.26e-95
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRI+LKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRITLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. NCBI nr
Match: XP_022956207.1 (protein YIF1B-like [Cucurbita moschata] >XP_022979905.1 protein YIF1B-like [Cucurbita maxima] >XP_023528982.1 protein YIF1B-like [Cucurbita pepo subsp. pepo] >KAG6582074.1 Protein YIF1B-A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 283 bits (725), Expect = 2.36e-94
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRISLKYSYYFLMPW ALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWTALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. NCBI nr
Match: XP_038896224.1 (protein YIF1B-A-like isoform X2 [Benincasa hispida])

HSP 1 Score: 282 bits (721), Expect = 3.17e-94
Identity = 144/147 (97.96%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAP LDI
Sbjct: 90  MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPFLDI 149

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRISLKYSYYFLMPW ALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 150 VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWTALCMGIFLVKTMKRVLFAEVRSYDSSRH 209

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 210 HYLLLFIALAQFPLFTWLGNVSVNWLI 236

[Close]

BLAST of Cucsat.G16561 vs. NCBI nr
Match: XP_022138088.1 (protein YIF1B-like [Momordica charantia])

HSP 1 Score: 283 bits (723), Expect = 4.76e-94
Identity = 144/147 (97.96%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRIS+KYSYYFLMPW ALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRISMKYSYYFLMPWTALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. ExPASy TrEMBL
Match: A0A0A0KU13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017080 PE=3 SV=1)

HSP 1 Score: 287 bits (735), Expect = 3.45e-96
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. ExPASy TrEMBL
Match: A0A5D3D2Y5 (Protein YIF1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00980 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 4.00e-95
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRI+LKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRITLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. ExPASy TrEMBL
Match: A0A1S3BYN0 (protein YIF1B OS=Cucumis melo OX=3656 GN=LOC103494509 PE=3 SV=1)

HSP 1 Score: 285 bits (728), Expect = 4.00e-95
Identity = 145/147 (98.64%), Postives = 147/147 (100.00%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRI+LKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRITLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. ExPASy TrEMBL
Match: A0A6J1IUN7 (protein YIF1B-like OS=Cucurbita maxima OX=3661 GN=LOC111479458 PE=3 SV=1)

HSP 1 Score: 283 bits (725), Expect = 1.14e-94
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRISLKYSYYFLMPW ALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWTALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

[Close]

BLAST of Cucsat.G16561 vs. ExPASy TrEMBL
Match: A0A6J1GVP6 (protein YIF1B-like OS=Cucurbita moschata OX=3662 GN=LOC111457970 PE=3 SV=1)

HSP 1 Score: 283 bits (725), Expect = 1.14e-94
Identity = 145/147 (98.64%), Postives = 146/147 (99.32%), Query Frame = 0


Query: 1   MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 60
           MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI
Sbjct: 123 MAFGTYVVLAGFSLGLQGKFTPEALSWLFIKGLLGWFMQVMLLKVTLLSLGSGEAPLLDI 182

Query: 61  VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWMALCMGIFLVKTMKRVLFAEVRTYDSSRH 120
           VAYAGYAFTGLCLAAIGRISLKYSYYFLMPW ALCMGIFLVKTMKRVLFAEVR+YDSSRH
Sbjct: 183 VAYAGYAFTGLCLAAIGRISLKYSYYFLMPWTALCMGIFLVKTMKRVLFAEVRSYDSSRH 242

Query: 121 HYLLLFIALAQFPLFTWLGNVSVNWLI 147
           HYLLLFIALAQFPLFTWLGNVSVNWLI
Sbjct: 243 HYLLLFIALAQFPLFTWLGNVSVNWLI 269

The following BLAST results are available for this feature:

BLAST of Cucsat.G16561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6GN58	1.4e-08	29.22	Protein YIF1B-A OS=Xenopus laevis OX=8355 GN=yif1b-a PE=2 SV=1	[more]
Q5BJH7	1.9e-08	29.53	Protein YIF1B OS=Homo sapiens OX=9606 GN=YIF1B PE=1 SV=1	[more]
Q6P301	1.9e-08	29.22	Protein YIF1B OS=Xenopus tropicalis OX=8364 GN=yif1b PE=2 SV=1	[more]
Q9CX30	2.5e-08	28.86	Protein YIF1B OS=Mus musculus OX=10090 GN=Yif1b PE=1 SV=2	[more]
Q6PC24	3.2e-08	33.06	Protein YIF1A OS=Danio rerio OX=7955 GN=yif1a PE=2 SV=1	[more]

BLAST of Cucsat.G16561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004152088.1	7.12e-96	100.00	protein YIF1B [Cucumis sativus]	[more]
XP_008453934.1	8.26e-95	98.64	PREDICTED: protein YIF1B [Cucumis melo] >KAA0044629.1 protein YIF1B [Cucumis mel...	[more]
XP_022956207.1	2.36e-94	98.64	protein YIF1B-like [Cucurbita moschata] >XP_022979905.1 protein YIF1B-like [Cucu...	[more]
XP_038896224.1	3.17e-94	97.96	protein YIF1B-A-like isoform X2 [Benincasa hispida]	[more]
XP_022138088.1	4.76e-94	97.96	protein YIF1B-like [Momordica charantia]	[more]

BLAST of Cucsat.G16561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU13	3.45e-96	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G017080 PE=3 SV=1	[more]
A0A5D3D2Y5	4.00e-95	98.64	Protein YIF1B OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00980 ...	[more]
A0A1S3BYN0	4.00e-95	98.64	protein YIF1B OS=Cucumis melo OX=3656 GN=LOC103494509 PE=3 SV=1	[more]
A0A6J1IUN7	1.14e-94	98.64	protein YIF1B-like OS=Cucurbita maxima OX=3661 GN=LOC111479458 PE=3 SV=1	[more]
A0A6J1GVP6	1.14e-94	98.64	protein YIF1B-like OS=Cucurbita moschata OX=3662 GN=LOC111457970 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005578	Yif1 family	PFAM	PF03878	YIF1	coord: 2..101 e-value: 9.6E-13 score: 48.2
IPR005578	Yif1 family	PANTHER	PTHR14083	YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN	coord: 1..107
None	No IPR available	PANTHER	PTHR14083:SF10	INTEGRAL MEMBRANE HRF1 FAMILY PROTEIN	coord: 1..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16561.T1	Cucsat.G16561.T1	mRNA
Cucsat.G16561.T4	Cucsat.G16561.T4	mRNA
Cucsat.G16561.T3	Cucsat.G16561.T3	mRNA
Cucsat.G16561.T5	Cucsat.G16561.T5	mRNA
Cucsat.G16561.T2	Cucsat.G16561.T2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030134	COPII-coated ER to Golgi transport vesicle
cellular_component	GO:0005793	endoplasmic reticulum-Golgi intermediate compartment
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0030173	integral component of Golgi membrane