Cucsat.G16187 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16187
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA repair protein XRCC2 homolog isoform X3
Location	ctg2231: 522126 .. 531530 (-)
RNA-Seq Expression	Cucsat.G16187
Synteny	Cucsat.G16187

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGGAATTTAGCCTGCTATTTACCTCATACTAGTGAATCGAAAACTCGCCCCCACGGTAAAAAAAAAAGTGAAAAAGGAAATGTCTCAAGTCACGTTGTAGTGGCTCACGTTCCGGCGATTTCTCTCCAAAACCCCAACCCCAGCCCGCCGGTCAGGCCACCAAGGGCGTCCTTATGGCGCTCGGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGGCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGTGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAAATCTTAATCCAGGTCCAATTATCAAGTTCAATCTGTCCATTTGAACTTCTTGCATGATTTATATCTCATATACCAATCGAAAAGTGATGGTGATTTACCTCGAAAGCATTTGAGAACAAGTTATGTTCCATTAAAAGTTGATCGCTTCTGTCTTACCAAGAAAAGTAGACTGCTTCTGTGAGCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAGTGGGATCCACTACGGAGGCTTGGGATGCCCTGCAGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGCTCCAAGTTCTGAAGCTTCGAATTGTGGAAGCCACTAGCAATGGTGAGCTATTCATGCCATTTAGTATTAGTAAAATGTTAACTTCAAGGTTATATTTCACGAGCTGCGATTCTGATTAACGATATCTCATAACGTCTTGTGGTATATCTAGGATTTGTTGCGTCTTTTAACTATTAATCTGCACACCTGTCTTTTTCTGTTGTACATTTGATATAGAGCTAGTCTTGATGATGTCTATTTTGATTGCCGGTTAAGAAAATAGTGCTCTCTAGTCTCCAAAGAAGTTTTGACTGCAAATAGTCCCTTCACTGAAAAATATTAGACAACCTTGGAATCATGTTCTTTCCTCTTTTTCTCCCTTTCTCATACCCATTCACTTACCCACCGTGCCATAAATTCCAACCATGATACACTTTCTTGATGGAGGTTCAACCGTCTGGCTTCCGTCTTTGTCATGAAGTTATGAGTTGCACCAAAGTTGACCATCGTTCTCTTGGTTGGTTTATGGTTGATCCAGGTGCCAACATACATTAAACCCCTTTCCATTGGCCCGTTTGTCTCCCACCTTCTTCTGAAGAGACGATATGAATTTCAAGGCCCAAATTCTAGAACTTTCACCCTCCTCCGTCTGAGTAACTTTGCCTTCTCCTTGACTTACCTTGTTTTTCCAGTCTGAAGTTAAAGAGGCCTGAAAAGCATTGAAGGCTATTAGATTAAGTCATTCTCTCGCCATATGTGGACCCTTGCATATGAACGATTATTCTTGTTTCCTCAAGATGTGGAATTTTGGTGATGTCTCGCATCTTGAGAGTTGTTGGACAGATCAAACAACTGTTCGACATTCACATATGCAGACGTGAGGTCTTGGACTCTCTGCTCATACAACTTGGTCTTTGCCCATGGTTTTAGGCCTTCGACGAGACATAAAACTTTGTCTTTCTTGAACATATCACGTATGTCTAGCATCAGTCCCGCGAACTGTTTCACATACTCTCAAATGTTGCCAGTATGTTTTAGTTATTGCAATTTCCATTGAGCTACGATTTCAATGTTTTCGAGAAAGAATTGTGAATGGAGTTCCTTCTTCTAACTATCCTAAGTATCTATCATGCAATGCCCCTCCCAAATATCAACATGTTGAGACCTCCACCATAATTTTCAATCCTTAGCAAGATGCATAGTTGCTAGCCATCGTTTTTGCTTCTTCTCTGATTGTGTTTGTTGCCTTGAAGTATTGCTTGAGGTCAAAGATGAAGTTCAAAGGCTTTAGCATCCCTTGCCCCACAGAAGGTCTTGGGTTCAGGAATCTTTATTTTGTTAACCTGAATCGCTCCTTCTGTTGGACCTTGATTTTCCACTGCTCGCATCGTGCGATTTACCTTCGTGCCCATGTTTGCTATCTCATTTCTAACGACATGGGGCAGCTAAAAAGTCTTCAAACGTGCCATTTATCTCATACGGCTCCCCCTTTATGTGATGCGCATAATGAGATGAGAATAATACATGAAATCAAAAAACACCGCCGTATGGCTGACCGGCGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCTTATTGAGACTCGAACTCATAGGGAAGAAAATTTATGGATGGAATTCAAGAATTGTTTTTGATCCAATCCGTAGGAATCAATAGAAAAGGCAAATCCCTTATGATACACCAGATCCGGCTCGGTTATTGATAGAGTGAATACTGGAGAGGAGCGAAAGCAGCTCGCTCGCAATATTCTCAAAATTGTCAGTGGAATTCAATATTCGATAATGAAAGCTGAGGATCAATGAAATTTGACTCCTGTTAAGTCTCTCTTCTTCGAACCCGTAGGCGTAGTAGGATAGGCTTTCCTTCCGCTCCGCTCCGTAGGTTGCTACTTTGCTCCACTTCTAACCCGGAGGGGGCGGTCTTAGTTCACGCTTGAGGCTATTGCCATTATTTTTCATACTTTTTCAAAGAATCCCTATAAGTTGACTTATTCTCTACCCGCTCGGCCTCGTAAACTCTGTATCTTTGTTCAAATAACAATTAAGGTGAAGCAGGGTCAGGAACAACGAATCTCTTTATGATAAACAGATTCATTTTGCAAGTTCGTTATTACGGGTAGTTCCTACAAAGGATCGGACTAATGACGTATACAATACTTGAATTCTCGATGTAGATGCTACATAGTTGGTTCTCATCCTTCAGAGACTACGAGTGTAATAGGAGCATCCGTCGACAAAAGGATCACCCTAAGATGATCATCACATGGCTATTGAGAACGAATCAAATCAGATGGTTCTATTTCTCAATCTTTCTGACTTGCTCCTATGTCCTTGAATTCATTCGAGACGTGTTTGGAGGGATCATCATAAATTATTGAAGTGTGTTGTTTTCTGTACATAAAATATTCAGCCAAAGCTGCTCCTGTATAAGGGGCAAGGTATTGTAATGTAGCCGGAGAATCTGCCGTTTCGGCTACACACAAAAAGGGTTATACGATATATCTGGTGTGGAAGTCGGCCAACATTTGTATTGGCAAATAGGAGGTTTCCAAGTACATGCCCAAGTACTTGTGTGTGTACATGTATGAATCAAATTCATTTCGTTAGGATGGGGCTCATCAATTTAATTAGGGATCGGTCTTATGATGAAACAATTCATTGCATTGATCAAATCCAATATAAAAAACCATTTTACCTATACTCATTAGATAAATCCAGTTCCTCAATGAGCGACTACCAAAGATCTTCGTTTCTCAAACTCTAGCTTGTCCACAAATCAAATACAGTAAGTCGTTCCTAGATCCATGTGATTTACTAGTGCATTCGATTTGCATTGGGTTATGGTGGAGTTTTTAACCGGTTTCATGTCATGATTTTGACTCCCACCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTACAGGTACCCAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATTCGACATTAGAAGTATATTGATTTTTCCCCAATAACCGAATACTTTTGTCTGTAAATACTGCATATTTGATTCCATCCATAAATTTTCTTCCGCTCTACCACTGAGCTACTGAGGAACAACGGTAAATTAGGTCTCAGAGAATTCAATTCCCGTTCTCAACCCATGACCAATATGAGCTCGAGGTTTCCTTCGTAATTTCACAGGAATCAATAAAACAGAAGAAATATTTCAATCCGGTTAAATTTCATCCAAATGTAGTAGGATCAGAATGAAGAGAACTATTCTGATTTCAGCGAAGTTGAAGAAAAAAAGAATTTTATTTATCTGACAGATTGGGGTAATTCTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCATGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACTTCAAGAACGAGAAAAAGAACTACGACCCCCTTCCGGTATTTCGATTGAAATACCCATAAATGGTATTTTTCGTAGAAATAGTATTCTTGCTTTTTTCGATGATCCTCAATACAGACTAATAAATTCGTTCATTTAGATTGATTGTCTCCATGTGGGATAATTCTAAAAAGAAAGGGTTTACAAAAAACGAGAAAAAAGGAAAGGATTGGGTAGGGTAGAGTAGAGGAGAGTGGAGTCAACTAGATGTATTGAATCGAATTGCTATAAGACAACCCTTGTGGAGATGAAAAAAAAACAATTGTAGATTTCTTTTTTTTTTTTTTGAAAAACAATATTTCTTTTTTTTTTTACTTCGCCCTTTGCATTGAAAGAAAAGATTCCAAAATAATATGATTCAACCTCAAACCCTTTTGAATGTAGCAGATAACAGCGGAGCCCGAGAATTGATGTGTATTCGAATCATAGGGGCTAGTAATCGACGATATGCTCATATTGGTGACGTTATTGTTGCTGTAATCAAGAAAGACTCCCGAATTTGGAGTATCCTACTTTCACGCAATTCACAGGGTTCAACAAGCAATCGATATTTCACGATCAAGGGTGTAGTACTATTTGTAAGTAGTCCTATTGAAACCAAGAAATATAGGCCTGCCTGCCATCCACACCAGAATAAATGAAGTTTTCCGAAAAAACCTGCTAGTGGAGGAAGACCTCCTAAGGATAAGAGACATAGGGCTAAAGAGAGAGCCAAAAGAGGATATTGTGAGGCTCATTACTTCAATTGAAATAATGAGAAATCATTTCGCCTTTTTAGTTGGAACTGGAACTTTAGGCGGTTCGCGAAAAAAGATAGTTCTTTTTTGCATCTGTTATTTTGGCACAAATCTTTTTAGTTCTTAAAAAGAAACAGTTTGAGAAGGTTCAATTGTCCGAAATGTCCCGAATCAAAAAAATAAGAATTTTTAGCATTAAAAAGCTTATATCCATAGAACATCTGGCGTAACATAGATAATAAATAAATGGGAGTTAATATAATTCCAATTGCCATTACCATCTTTCCACATACGGAAATATGAAATTCAAACTCATGTGACAAGCCACGGACCTGAAAGAATCACTAACGAAATACCACATCTAGAAGCCGGTTCAGGTACAAGATACTATCATTACCGCCTGGACAATTAGACATCCAACCCGTAATCGCAACGACCCAATTGCAAGAGCGGAGCTCTACCAACTGAGCTATATCCCCATAATTCTTCCATTTTACTGGACGGAATTTCAAGCAATTAGATTCGATTCACAAGAATCCCTAAATAACTTTTCACTAAAAAGGAAAGTCTAAAGTATGTAGGTTTCTGCTTTTTAGCCTACTCTTTTTTGGTAGTTCGATCGTGGAATTTATTTTTTCTGTATTTCCGGAATATGAGTGTGTGACTTGTTAGAATTGATCCTATGGATACGACAGAGAAGAAGTCGGTCATCTTGATCAAGATGATTTTATCTTGGAATAGCTGTTGGTTGGTTAGGACACCCTGTTTTTAGAGATAAAGAAGGGCGCGAACTTTTTGTACGCCGTATGCCGACCTTTTTTGAAACATTTCCGGTTGTTTTGGTAGACGGAGATGGAATTGTTAGAGCCGAGGCCATTGTTTGGACGAGTCCAAACCAAGTCAGAAGGTTCTCAGAAAGGATAGGCTTTCGAATAGTGGAATCTTGAGGTCTTTGACTCCTTTGCTTAAGGAAAGGAATAAGGAAAGCATTCTAAGAAAGACAGGTCAGCTAATGATTCCGTTGTGGTCAAGAGCTCAAGTACCGAAGATGAGGCATACCATACTCAACCAATAAGGAAGGGCTGCAAGAGGAGGCTCAAAGAATCCCACGGAGCGGGAGGACAAGAACTGAGTATTTTACTATCAAATTGGATATGTCAGCAAGAGAAGAAGAAGAAAACTGGACATGGCTTTGGCCCTATGCTAGCTGGAAGTTTGCACGTAAAATCAGTCTTTTTGGACGTTGCAGATAGGCCTCTGAAAACGACCTCTACAAAAGGAAGAGAAGACCGTCGATATTAATATGCGCTAGTCGCAGTGGAAGTGGCTGCTGATGAGGCTCAAAGAATTTGAGGATCGCTCTTTCATTCGTTACCGCTCCGTGGGTCGCAAAAAGATGTTGTGAGTGAGTTATTTCAGCTCCACGCTTTCGTTCCCTCGAATCAAAATTCAATCAAGTAAAGCCTTACTTAAAACTTCAAAAATGAATTCTTTTTTTTTTTATTTCTTCCGCAAAATTTGGCACGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTCCAGGATCGTCTTTTAGGAACTATCTAGTTTGCCATCATGCTTTTTTATATGGGCAACAGAGCCTGTCGAGCTATCGCCACGCTCGTACTTTCCAGTTCTTGTAGTTTTTGCCTATAGAGTGTCAACTCATGCCAAAGGTCTTTGGCCTTTAGAAGAAGTCTGAAGGATGATGAATTTGTAGATTTTCCATCACTGCTTTCCCTTCTCTCTTCTGAAAAAGTGGTAAACTCCACAATTTTAGATCATGGTCCATTGATCCTCAAGGCCGATTTTCTGTTAAGTCTCTTTGAACTCACTTAAAATCTGACTCCCCAATGGATAAACGTCTTTTTTCAGCAATTTGGAAAACAGGCAGCCCTCGAAGAGTCAATATTTTGATTTGGATTATGGTCTTCGGGTCCCTCAATTGCTCTGAAATCTTGCAAAAAAGTCCAGGTGTGCCTCCTGATCCCTCTAGGTCTCCTTTGTTAACTACTTCTTTTTGGCTCTCTTTGTATAACTCTCTTGTACTTTGGGTTCTTATTAATAAAGAAGTTCTTGTCTCCGTTTAAAAAAAAAACGCTTGCAAAAATTCAGTTATGGGTAATCCGTTGAGGTCACCGCATCAATAACATCACCTTCCTGAGAAATTCTTGTATATGGGCTTCTAAGAAGCGGATGGAGTAGGAACTTCTACTAGGGAAAGCATCTTCAAGCTCTACCAATTGGTCCAAATGGGACTTGCCCATCTTTTTCGTTGCAAATGTTGCGTCTCAACTGCAAAGGAGCCGACGAGGCTTTGTTACCACTTGTCACAATCGCAACCTTTCGAACACAGATGGGCAATTGTACGACACTTGTTCTAATCTGACAAAAAGGTCAGCCATACGAAATCCGAAAGTTGCGGACAAACTCGCTATATGATATAGTCTCCTTTAACGTTTTGAGAGAAAATGATTTTATAAAATGTGAGATAGTAAAGGTAGTAAACATCATTAAGGAAAGGATTGAAAATTGACAATTGCAAAGTAAGCTTAGATTGCAAAGAGTACTACAAGGCTCGGTTAGGTCTCCTGTACAGTACATTTAAACAATTTTAAATGTTATAGGCTTGCATTTGCTAAAGTGCGAGCGGTTACTTACATGAAAAATAACATAGAAATGAAAACTACTTACTAAACTAAATACATGGCTTAAATATAGGGTGGTTGAGAATGGTTTTGGGAATGCAACCGTAGGTATATCCACCTTAAAATCTTGTTTTGTTTTCTGGTTTTCTTTTTTCCCCCTCCCTTTGGGAAGTTTTTATTCTTTGAACATTTTCCTCTTTATTCTGTCATGAGAAGTTGTTTCTTGGTTTTTAAAAAAGAAAATATATTGATTTGTGTTTATAACAAAGTCATTGACCTTTGTTTTTGGTCTTGTATTAGTATTGTCACTTTGCTGTGATTTGCTTTTCCTACGAAAAAAGGATGTTGGTTTGTGCTAAAACTAGGGTGATATTTTTCTAGGATCCTTAAGTACAGGAGATGGGGAAAATTTTGATGCATTATATGCTACATGCTTGAGAAGATTCTCTTACATCCGTTGCTATGACAGTTTTGAATTCCTTGCCACTCTCAAGGTAAGATTCTTCTTATTTTAAAGAAAATTAGCCTTCTGCATGCATTTCATTCATTCACATTTTTTTCTAATTTTATAAGAAACAATTTTCATTGATAAATGAAGTAACAAAAGAGAAGGGAGTAAAGGCTCAGTCTAAAAGCCAAAGATGTTAAAACTATTTGTAAAAATAAATTGTTAAATGTACATAACTTCATAGCTTATAGTTTAGGTTCACTGGTGATTTAACATGGTATCAAAGTAGTGGGTCTTGTGTGAACTCTTGTAATTTCATGCTGTCACCTCTTTTTGTTTTTTTTTTTTCGGTTCTTTGGAAGGTGAAAATTCTAAAAAAGATGACATTCTTTATCTGGCCGTTTATGGAAGAATCAATATCTTGGATAGGCTTTCGAGAAAGTTGCTATCTCTGGGTCGTTTTCATTGTATTTTTTGTCGGAGTATGGAAGTAGATTCGAATAATTTATTCTGGAGCTGTAATTATGTTGAATTGGTTTTGAACTAGTTTTTTTTGGAATATTTGACGTCAGAGTTAGCCCAACACAGAGCTTTTAGTGACATGATCAGGGAGTTCCTTCTCCATCTGTCATTTGGGGAAAAGAGAGTTTCTTACGGAAGGCCATGATCCATGTTTGTTGTAGAATATTTGTGGGGAGAGAAATAATAGGACTTTTAGTGGGATTAAGTGGGATCTGATTGATGTTTGGTCCTTTGTGAATTTTATGTTTCTCTTTAGGCATTAGTGACAAGGTCCTTCTGTAGACTAGGTAATATTTTGTTAGATTGGGGCCTTTCTTTAGGGTGCTCCCTGTTGTGGTCTTTGCTTTCTTGTATGGCATCTTTCAATTTTTTTTTTAAATGAAAGTTGGTTTTCTATAAAAAAAACGAAGCCTATAATTACATAAAAGGGGAAGCAACAATGCAACATTCTCTGTTGGTCTCTCTTCTCACTTCTTTTGCTCCTTGATATCACGCCCAAAAAATGACTTACAAATTTTTTCGTGAATTAAGGCTCTTTAGCATTGTCTGAGAGGAGCCAAATAAGTCCCAAGCTGTCCAAAGGTCCAAGGAAGAAGAATAAAGACACGCCAACACTTTGACATGCCCATGTGCACGACATGCGCGTGTGGGCGCGCGGGTGCAAGGAAGGCAGACAGACATAGGCAGGCGCGCGCGCAAGGCCTAGACGGATGCGCATGTGGCACCTGCGCACGTAAGAGACGGATGTGGGAACGAGCACGACGTGCGCCTAGAAGGATCGAGAAACCTCTCAAAGATTCCAGAAAGTTCGTGAGCGGACGCGAAGCTTCACAGACGCCCGACAAGTGCGC

Coding sequence (CDS)

ATGGCGCTCGGTCAGTGGATCGACGGCGATGAGAGCGCCTCGGAGATGCTTGGCAGAGTTCTCAAAGAGCGAACCTCCTTGGTTGTTCCGCCTCTCCACAGAGTTCCTCTCCGTGTTGGCAATGTGGTCGAACTTGTTGGACCTTCTGGTTCTGCCAAAACGCAAATCTTAATCCAGGCTGCAGTTAATTGCATTCTTCCCAAGGAGTGGAGTGGGATCCACTACGGAGGCTTGGGATGCCCTGCAGTGTTCATTGACTTGGATTGTCGTCTTGACATCACAAGGCTGCTCCAAGTTCTGAAGCTTCGAATTGTGGAAGCCACTAGCAATGGATCCTTAAGTACAGGAGATGGGGAAAATTTTGATGCATTATATGCTACATGCTTGAGAAGATTCTCTTACATCCGTTGCTATGACAGTTTTGAATTCCTTGCCACTCTCAAGGCTCTTTAG

Protein sequence

MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGENFDALYATCLRRFSYIRCYDSFEFLATLKAL

Homology

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BLAST of Cucsat.G16187 vs. ExPASy Swiss-Prot
Match: Q682D3 (DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 1.7e-44
Identity = 89/162 (54.94%), Postives = 114/162 (70.37%), Query Frame = 0


Query: 6   WIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 65
           WI GDE+A +ML RVLK+R  L++PPLHRVPLR GNVVE+ G S SAKTQILIQAA++CI
Sbjct: 9   WIRGDETAKQMLSRVLKDRAFLLIPPLHRVPLRAGNVVEITGASTSAKTQILIQAAISCI 68

Query: 66  LPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEAT--SNGSLSTGDGENF-- 125
           LPK W+GIHYGGLG   +F+DLDCR D+ RL Q+LK R+++A    NG+    +  N   
Sbjct: 69  LPKTWNGIHYGGLGKLVLFLDLDCRFDVLRLSQMLKHRLLQANWLGNGAWWQLEESNVKS 128

Query: 126 -------------DALYATCLRRFSYIRCYDSFEFLATLKAL 151
                        + LYA+C++RF Y+RCYDS E L++LK L
Sbjct: 129 CKSAEEKTKTVFDEELYASCMKRFLYVRCYDSLELLSSLKTL 170

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BLAST of Cucsat.G16187 vs. ExPASy Swiss-Prot
Match: O43543 (DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 5.1e-09
Identity = 47/145 (32.41%), Postives = 72/145 (49.66%), Query Frame = 0


Query: 11  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES +E+L R L+ R+SL  + P L      P+  G+++E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKEIEPNLFADEDSPVH-GDILEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGENFDALY 130
           LPK       GGL    +FID D   D+ RL+ +L+ R+ +++             + + 
Sbjct: 69  LPKS-----EGGLEVEVLFIDTDYHFDMLRLVTILEHRLSQSS-------------EEII 128

Query: 131 ATCLRRFSYIRCYDSFEFLATLKAL 151
             CL RF  + C  S   L TL +L
Sbjct: 129 KYCLGRFFLVYCSSSTHLLLTLYSL 133

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BLAST of Cucsat.G16187 vs. ExPASy Swiss-Prot
Match: Q9CX47 (DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.6e-08
Identity = 47/145 (32.41%), Postives = 69/145 (47.59%), Query Frame = 0


Query: 11  ESASEMLGRVLKERTSL--VVPPL---HRVPLRVGNVVELVGPSGSAKTQILIQAAVNCI 70
           ES +E+L R L+ R+SL  + P L      P+  G++ E  GP G+ KT++L      CI
Sbjct: 9   ESGTELLAR-LEGRSSLKELEPNLFADEDSPVH-GDIFEFHGPEGTGKTEMLYHLTARCI 68

Query: 71  LPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGENFDALY 130
           LPK       GGL    +FID D   D+ RL+ VL+ R+ +++             +   
Sbjct: 69  LPKS-----EGGLQIEVLFIDTDYHFDMLRLVTVLEHRLSQSS-------------EEAM 128

Query: 131 ATCLRRFSYIRCYDSFEFLATLKAL 151
             CL R     C  S + L TL +L
Sbjct: 129 KLCLARLFLAYCSSSMQLLLTLHSL 133

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BLAST of Cucsat.G16187 vs. NCBI nr
Match: XP_031741381.1 (DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 301 bits (771), Expect = 7.57e-101
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRFSYIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTM 150

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BLAST of Cucsat.G16187 vs. NCBI nr
Match: XP_011655113.1 (DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus])

HSP 1 Score: 301 bits (771), Expect = 1.51e-100
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRFSYIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTM 150

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BLAST of Cucsat.G16187 vs. NCBI nr
Match: KAE8648111.1 (hypothetical protein Csa_004719 [Cucumis sativus])

HSP 1 Score: 301 bits (771), Expect = 2.10e-100
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRFSYIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. NCBI nr
Match: XP_008456838.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo])

HSP 1 Score: 286 bits (731), Expect = 6.77e-95
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVLKLRI+EA SNGSL+TGDGEN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRF YIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. NCBI nr
Match: XP_008456836.1 (PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo])

HSP 1 Score: 286 bits (731), Expect = 1.80e-94
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVLKLRI+EA SNGSL+TGDGEN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRF YIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. ExPASy TrEMBL
Match: A0A0A0KMH0 (RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4 SV=1)

HSP 1 Score: 301 bits (771), Expect = 7.32e-101
Identity = 148/150 (98.67%), Postives = 149/150 (99.33%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN
Sbjct: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRFSYIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFSYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. ExPASy TrEMBL
Match: A0A1S3C456 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 3.28e-95
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVLKLRI+EA SNGSL+TGDGEN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRF YIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. ExPASy TrEMBL
Match: A0A1S3C491 (DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 8.71e-95
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVLKLRI+EA SNGSL+TGDGEN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRF YIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. ExPASy TrEMBL
Match: A0A1S3C3R7 (DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496670 PE=4 SV=1)

HSP 1 Score: 286 bits (731), Expect = 1.20e-94
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           M L QWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MELSQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEW+GIHYGGLGC AVFIDLDCRLDITRLLQVLKLRI+EA SNGSL+TGDGEN
Sbjct: 61  AVNCILPKEWNGIHYGGLGCSAVFIDLDCRLDITRLLQVLKLRILEAISNGSLNTGDGEN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALYATCLRRF YIRCYDSFEFLATLK +
Sbjct: 121 FDALYATCLRRFFYIRCYDSFEFLATLKTM 150

[Close]

BLAST of Cucsat.G16187 vs. ExPASy TrEMBL
Match: A0A6J1KC81 (DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111492982 PE=4 SV=1)

HSP 1 Score: 244 bits (623), Expect = 2.88e-80
Identity = 123/150 (82.00%), Postives = 129/150 (86.00%), Query Frame = 0


Query: 1   MALGQWIDGDESASEMLGRVLKERTSLVVPPLHRVPLRVGNVVELVGPSGSAKTQILIQA 60
           MAL QWIDGDESA+EML RVLKERTSL+VPPLHRVPL VGNVVELVGPSGSAKTQILIQA
Sbjct: 1   MALRQWIDGDESAAEMLTRVLKERTSLLVPPLHRVPLHVGNVVELVGPSGSAKTQILIQA 60

Query: 61  AVNCILPKEWSGIHYGGLGCPAVFIDLDCRLDITRLLQVLKLRIVEATSNGSLSTGDGEN 120
           AVNCILPKEW+GI YGGL C  VFIDLDCRLDI+RL QVLKLRI+E   NG     D  N
Sbjct: 61  AVNCILPKEWNGIRYGGLECSVVFIDLDCRLDISRLSQVLKLRILEGNGNG-----DWGN 120

Query: 121 FDALYATCLRRFSYIRCYDSFEFLATLKAL 150
           FDALY TCLRRF YIRCYDSFEFLATLK +
Sbjct: 121 FDALYTTCLRRFFYIRCYDSFEFLATLKTM 145

The following BLAST results are available for this feature:

BLAST of Cucsat.G16187 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q682D3	1.7e-44	54.94	DNA repair protein XRCC2 homolog OS=Arabidopsis thaliana OX=3702 GN=XRCC2 PE=2 S...	[more]
O43543	5.1e-09	32.41	DNA repair protein XRCC2 OS=Homo sapiens OX=9606 GN=XRCC2 PE=1 SV=1	[more]
Q9CX47	5.6e-08	32.41	DNA repair protein XRCC2 OS=Mus musculus OX=10090 GN=Xrcc2 PE=2 SV=1	[more]

BLAST of Cucsat.G16187 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741381.1	7.57e-101	98.67	DNA repair protein XRCC2 homolog isoform X2 [Cucumis sativus]	[more]
XP_011655113.1	1.51e-100	98.67	DNA repair protein XRCC2 homolog isoform X1 [Cucumis sativus]	[more]
KAE8648111.1	2.10e-100	98.67	hypothetical protein Csa_004719 [Cucumis sativus]	[more]
XP_008456838.1	6.77e-95	93.33	PREDICTED: DNA repair protein XRCC2 homolog isoform X3 [Cucumis melo]	[more]
XP_008456836.1	1.80e-94	93.33	PREDICTED: DNA repair protein XRCC2 homolog isoform X2 [Cucumis melo]	[more]

BLAST of Cucsat.G16187 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMH0	7.32e-101	98.67	RECA_2 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G289900 PE=4...	[more]
A0A1S3C456	3.28e-95	93.33	DNA repair protein XRCC2 homolog isoform X3 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C491	8.71e-95	93.33	DNA repair protein XRCC2 homolog isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A1S3C3R7	1.20e-94	93.33	DNA repair protein XRCC2 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496...	[more]
A0A6J1KC81	2.88e-80	82.00	DNA repair protein XRCC2 homolog isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013632	DNA recombination and repair protein Rad51-like, C-terminal	PFAM	PF08423	Rad51	coord: 38..100 e-value: 2.7E-5 score: 23.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 24..150 e-value: 2.6E-19 score: 71.8
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 37..149
IPR030547	DNA repair protein XRCC2	PANTHER	PTHR46644	DNA REPAIR PROTEIN XRCC2	coord: 5..150
IPR020588	DNA recombination and repair protein RecA-like, ATP-binding domain	PROSITE	PS50162	RECA_2	coord: 17..150 score: 16.167185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16187.T1	Cucsat.G16187.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0000724	double-strand break repair via homologous recombination
cellular_component	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex
cellular_component	GO:0005657	replication fork
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008094	ATP-dependent activity, acting on DNA
molecular_function	GO:0003677	DNA binding