Cucsat.G16024 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16024
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	LOB domain-containing protein
Location	ctg2178: 626668 .. 628415 (+)
RNA-Seq Expression	Cucsat.G16024
Synteny	Cucsat.G16024

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAAAACCCTTTCGTTCTTTCTTTCTTTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTACTTCTTTCTTTCTTGAAACCCCAAATCTCCCCATCCAACGGCTCTCATTCACCCCCCGACGACGCCACAGTTACCACCCTTCTCTTTCTTTATACAAATAAATAAATAAATAAATAAATAAATAATAATTTTCCTTTTTTCTCTCTAACAATTTTAATTTCTTTTTTTGCCTTCTTCAATCAATTAAAATAAATTTCCTTTTTCTCTCTTTCTGTTCTCCTTCTGTTTGGTATTGCGAAACTCGAAGATCGGATCCAGCGCTTTCTCTCCAAACCCTAATACCCAAAAACAAAACAGAAAAAAATTAAACATATTCTCCCAATCTCTTCCTTCTTCTAATTTCTTCATTCATGGACTTCAATCGCTCCAACACAATTTAACGCCGTCCGATTCATCCCAAAAGGTCAGTTTCCTCCCCTTTTTCCCTTCCATCTTTTTACGCCATTTTCATTCTTCTAATTTGCTTGGATTCTTGATTCTTCTTCTGTTGGTTCTTGATGAAAAATGTTACATATATATGTATAGAATTTTGTTTTTGCAGTTGGCTTTTCTTTTTAAAATATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGAGGCACAACAATTGGCGGCTGCGGTTGCGGCGAGAGAACAGGAAATGTTTAAAGCTTATGAACATAAGCAAAGCCAACAACAACAAAGGCAGCAAGAGCTATTGAGCTTTAACAACAACAACGTCAACAATCAAATGGGTGCTTCTAATTTGACATTGGGAACATTTGTGGATAATTCCTATCAACAAATTCAACAGCATGATCATCAAAATTCTTCATCACATCCACTACAAGTACAACTGTTTCTTCAACCACAACAAACACAGCAACAGCTTGAACAACAACATCATCATCATCATCAATCTCACAAGCCTGAATCTACTACACATGCTGATGATGGTAGGATTAATAACAACAATATTAACATCGGTCCATCTTGTTAGTTTTATTTTCTCTTAATTTTAGGGATTGATTTTGTTTTGTTTTTCTTTTTTTAATGATGATTATGACAAGACTGTTTTCATGGATGGGATTAGTTTTAAATGGGAGGGAGTATTAGCATGCACAGCAGGAAAGATGCTTTTTGCATTTATGAATTATCTTTTTTTTTTTTTTCATTTTGTTTTAATGT

Coding sequence (CDS)

ATGTCGTCATCAAATTCACCATGTGCGGCTTGTAAATTCCTACGAAGAAAATGCACCCAAGAATGTGTATTCGCACCGTATTTCCCACCAGATCAGCCACAGAAATTTGCCAATGTCCACAAAGTCTTCGGCGCAAGCAACGTAGCCAAACTTCTAAACGAACTCAACGCTACACAACGTGAAGACGCCGTTAATTCCTTAGCCTACGAAGCCGAATTCCGTTTACGTGATCCCGTTTACGGTTGCGTTGGTTTAATCTCCGTTCTTCAACATAAACTCAAACAAATGCAAACCGATCTCTACAATGCTAAAAAAGAATTAGCTTCTTATATTGGTCCTCAAGCGATGCTTCCTATTCTCCAACCTCAAACCACTCCTTCCCCTTACAATCATCATCTCTCCCCTATGATGGGCATTGCTCCATCCCCCTTCACCTTCCCCTTCCGTTCCCGGTTCCTCGCAACAAATGATTATTCGGGACTCCGCCGTTACCACTCCTGCTCATCATCATCATCATCATTTACAACAACAGCAACAACAATTGTTTGA

Protein sequence

MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPILQPQTTPSPYNHHLSPMMGIAPSPFTFPFRSRFLATNDYSGLRRYHSCSSSSSSFTTTATTIV

Homology

[Close]

BLAST of Cucsat.G16024 vs. ExPASy Swiss-Prot
Match: Q9FKZ3 (LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.1e-57
Identity = 114/155 (73.55%), Postives = 125/155 (80.65%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           M+SS+SPCAACKFLRRKCTQECVFAPYFPPDQPQKFA VHKVFGASNVAKLLNEL + QR
Sbjct: 1   MASSSSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSL YEAE RLRDPVYGCVGLIS+LQH+LKQ+  DL NAKKELA+Y+GPQAMLPIL
Sbjct: 61  EDAVNSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKELATYVGPQAMLPIL 120

Query: 121 QP---QTTPSP-------------YNHHLSPMMGI 140
           QP      P P             ++H+L PMM I
Sbjct: 121 QPHFMSLPPQPQRPSSSSASVLTQHHHNLLPMMAI 155

[Close]

BLAST of Cucsat.G16024 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.3e-47
Identity = 89/109 (81.65%), Postives = 99/109 (90.83%), Query Frame = 0


Query: 2   SSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQRE 61
           SS+NSPCAACKFLRRKC  ECVFAPYFPPDQPQKFANVHKVFGASNV KLLNEL+ +QRE
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query: 62  DAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY 111
           DAVNSLAYEA+ RLRDPVYGCVG+IS+LQH+L+Q+Q DL  AK EL+ Y
Sbjct: 64  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of Cucsat.G16024 vs. ExPASy Swiss-Prot
Match: Q32SG3 (LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.3e-43
Identity = 86/125 (68.80%), Postives = 97/125 (77.60%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           + SPCAACKFLRRKC  +CVFAPYFPPD PQKF +VH+VFGASNV KLLNEL+  QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQREDA 89

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY------------I 117
           VNSLAYEA+ RLRDPVYGCVG+IS+LQH L+Q+Q DL  AK EL+ Y             
Sbjct: 90  VNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPT 149

[Close]

BLAST of Cucsat.G16024 vs. ExPASy Swiss-Prot
Match: O64836 (LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 5.0e-43
Identity = 88/140 (62.86%), Postives = 104/140 (74.29%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           +++PCAACK LRRKCTQECVFAPYFPP  PQKF  VH+VFGASNV K+LN+L   QRED 
Sbjct: 2   ASTPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDT 61

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAML--PILQ 123
           VNSL YEAE R+RDP+YGCVGLIS LQ  LK++Q DL  AK+EL  Y+GP A++  P L 
Sbjct: 62  VNSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELVGYLGPDAVIPPPYLP 121

Query: 124 PQTTPSPYNHHLSPMMGIAP 142
           P     P N  +S M G+ P
Sbjct: 122 PIGNNPPPNFMMS-MEGMPP 140

[Close]

BLAST of Cucsat.G16024 vs. ExPASy Swiss-Prot
Match: A1YKY7 (Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-42
Identity = 82/125 (65.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 4   SNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQREDA 63
           + SPCAACKFLRRKC  +CVFAPYFPPD PQKF  VH+VFGASNV KL+NE++  QREDA
Sbjct: 30  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVRVHRVFGASNVTKLMNEIHPLQREDA 89

Query: 64  VNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASY------------I 117
           +NSLAYEA+ R+RDPVYGCVG+IS+LQH L+Q+Q DL  AK EL+ Y             
Sbjct: 90  MNSLAYEADMRIRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAPT 149

[Close]

BLAST of Cucsat.G16024 vs. NCBI nr
Match: XP_004148465.1 (LOB domain-containing protein 36 [Cucumis sativus] >XP_031736456.1 LOB domain-containing protein 36 [Cucumis sativus] >KGN62069.1 hypothetical protein Csa_006727 [Cucumis sativus])

HSP 1 Score: 296 bits (758), Expect = 3.53e-98
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIAPSPFTFP 147
           QPQTTPSPYNHHLSPMMGIAPSP   P
Sbjct: 121 QPQTTPSPYNHHLSPMMGIAPSPSPSP 147

[Close]

BLAST of Cucsat.G16024 vs. NCBI nr
Match: XP_008457883.1 (PREDICTED: LOB domain-containing protein 36-like [Cucumis melo] >XP_008457884.1 PREDICTED: LOB domain-containing protein 36-like [Cucumis melo] >KAA0045878.1 LOB domain-containing protein 36-like [Cucumis melo var. makuwa])

HSP 1 Score: 290 bits (742), Expect = 9.81e-96
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIA-PSPFTFP 147
           QPQTTPSPYNHHLSPMMGI  PSP   P
Sbjct: 121 QPQTTPSPYNHHLSPMMGIVGPSPSPSP 148

[Close]

BLAST of Cucsat.G16024 vs. NCBI nr
Match: XP_038902117.1 (LOB domain-containing protein 36 [Benincasa hispida])

HSP 1 Score: 263 bits (672), Expect = 8.47e-85
Identity = 130/142 (91.55%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQ DLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQNDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQT-TPSPYNHHLSPMMGIAP 141
           QPQ  TP+P  +++SPM+ I P
Sbjct: 121 QPQPPTPNPTPYNMSPMLTIPP 142

[Close]

BLAST of Cucsat.G16024 vs. NCBI nr
Match: XP_023533097.1 (LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 256 bits (654), Expect = 1.13e-82
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNV KLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKEL++YIG QAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELSTYIGSQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGI 139
           QP   P   NHH+ PM+GI
Sbjct: 121 QP---PIAGNHHMFPMLGI 136

[Close]

BLAST of Cucsat.G16024 vs. NCBI nr
Match: XP_022971742.1 (LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB domain-containing protein 36-like [Cucurbita maxima])

HSP 1 Score: 251 bits (642), Expect = 4.53e-80
Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNA+QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQ+DLYNAKKELASY+GPQAM+PIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPIL 120

Query: 121 QPQT------------TPS-----PYNHHLSPMMGIAPS 142
           QP T            +PS     PYN  +SPM GI  S
Sbjct: 121 QPSTAIMTSNPQGPVTSPSSSVLLPYN--MSPMFGIPSS 157

[Close]

BLAST of Cucsat.G16024 vs. ExPASy TrEMBL
Match: A0A0A0LM25 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G295940 PE=3 SV=1)

HSP 1 Score: 296 bits (758), Expect = 1.71e-98
Identity = 144/147 (97.96%), Postives = 144/147 (97.96%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIAPSPFTFP 147
           QPQTTPSPYNHHLSPMMGIAPSP   P
Sbjct: 121 QPQTTPSPYNHHLSPMMGIAPSPSPSP 147

[Close]

BLAST of Cucsat.G16024 vs. ExPASy TrEMBL
Match: A0A1S3C635 (LOB domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LOC103497461 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 4.75e-96
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIA-PSPFTFP 147
           QPQTTPSPYNHHLSPMMGI  PSP   P
Sbjct: 121 QPQTTPSPYNHHLSPMMGIVGPSPSPSP 148

[Close]

BLAST of Cucsat.G16024 vs. ExPASy TrEMBL
Match: A0A5A7TSN9 (LOB domain-containing protein 36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G004140 PE=3 SV=1)

HSP 1 Score: 290 bits (742), Expect = 4.75e-96
Identity = 143/148 (96.62%), Postives = 143/148 (96.62%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120

Query: 121 QPQTTPSPYNHHLSPMMGIA-PSPFTFP 147
           QPQTTPSPYNHHLSPMMGI  PSP   P
Sbjct: 121 QPQTTPSPYNHHLSPMMGIVGPSPSPSP 148

[Close]

BLAST of Cucsat.G16024 vs. ExPASy TrEMBL
Match: A0A6J1I2T4 (LOB domain-containing protein 36-like OS=Cucurbita maxima OX=3661 GN=LOC111470410 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 2.19e-80
Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNA+QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQ+DLYNAKKELASY+GPQAM+PIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPIL 120

Query: 121 QPQT------------TPS-----PYNHHLSPMMGIAPS 142
           QP T            +PS     PYN  +SPM GI  S
Sbjct: 121 QPSTAIMTSNPQGPVTSPSSSVLLPYN--MSPMFGIPSS 157

[Close]

BLAST of Cucsat.G16024 vs. ExPASy TrEMBL
Match: A0A6J1EQF1 (LOB domain-containing protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111434896 PE=3 SV=1)

HSP 1 Score: 251 bits (642), Expect = 2.48e-80
Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNATQR 60
           MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNA+QR
Sbjct: 1   MSSSNSPCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVAKLLNELNASQR 60

Query: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLYNAKKELASYIGPQAMLPIL 120
           EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQ+DLYNAKKELASY+GPQAM+PIL
Sbjct: 61  EDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQSDLYNAKKELASYVGPQAMIPIL 120

Query: 121 QPQT------------TPS-----PYNHHLSPMMGIAPS 142
           QP T            +PS     PYN  +SPM GI  S
Sbjct: 121 QPSTAIMTTNPQGPVTSPSSSVLLPYN--MSPMFGIPSS 157

The following BLAST results are available for this feature:

BLAST of Cucsat.G16024 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKZ3	2.1e-57	73.55	LOB domain-containing protein 36 OS=Arabidopsis thaliana OX=3702 GN=LBD36 PE=2 S...	[more]
O04479	3.3e-47	81.65	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
Q32SG3	1.3e-43	68.80	LOB domain-containing protein 6 OS=Zea mays OX=4577 GN=LBD6 PE=1 SV=1	[more]
O64836	5.0e-43	62.86	LOB domain-containing protein 10 OS=Arabidopsis thaliana OX=3702 GN=LBD10 PE=2 S...	[more]
A1YKY7	1.4e-42	65.60	Protein IAL1 OS=Zea mays OX=4577 PE=2 SV=1	[more]

BLAST of Cucsat.G16024 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148465.1	3.53e-98	97.96	LOB domain-containing protein 36 [Cucumis sativus] >XP_031736456.1 LOB domain-co...	[more]
XP_008457883.1	9.81e-96	96.62	PREDICTED: LOB domain-containing protein 36-like [Cucumis melo] >XP_008457884.1 ...	[more]
XP_038902117.1	8.47e-85	91.55	LOB domain-containing protein 36 [Benincasa hispida]	[more]
XP_023533097.1	1.13e-82	90.65	LOB domain-containing protein 36-like [Cucurbita pepo subsp. pepo]	[more]
XP_022971742.1	4.53e-80	81.76	LOB domain-containing protein 36-like [Cucurbita maxima] >XP_022971743.1 LOB dom...	[more]

BLAST of Cucsat.G16024 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM25	1.71e-98	97.96	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G295940 PE=3 SV...	[more]
A0A1S3C635	4.75e-96	96.62	LOB domain-containing protein 36-like OS=Cucumis melo OX=3656 GN=LOC103497461 PE...	[more]
A0A5A7TSN9	4.75e-96	96.62	LOB domain-containing protein 36-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A6J1I2T4	2.19e-80	81.76	LOB domain-containing protein 36-like OS=Cucurbita maxima OX=3661 GN=LOC11147041...	[more]
A0A6J1EQF1	2.48e-80	81.76	LOB domain-containing protein 36-like OS=Cucurbita moschata OX=3662 GN=LOC111434...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 86..106
None	No IPR available	PANTHER	PTHR31301:SF142	LOB DOMAIN-CONTAINING PROTEIN 6-RELATED	coord: 1..142
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 1..142
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 7..104 e-value: 4.8E-42 score: 142.5
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 6..107 score: 26.728626

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16024.T1	Cucsat.G16024.T1	mRNA