Cucsat.G16007 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G16007
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate-2, 6-diaminopimelate ligase
Location	ctg2178: 359249 .. 361388 (+)
RNA-Seq Expression	Cucsat.G16007
Synteny	Cucsat.G16007

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGAAATTTACTTCCAATTTCAATTTGTTTCTTCAAATATCTTCATAGAAACCCTAAAAGAAGAGTTGTGTTTTGATGTCGGACAGAGAGGAAACCGATTCGGACGCTCCCGAGGAGTTCACCGCCGAGCAGGTTGCTTATTTTTAACTATATGTACTTCTCTTTGCTTCTTGTCAATGGCTCCTTAACGATTTGGAACTTCTTTTTTTTTTTTCTTGTTGCAGGGAGTACAACAAGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCTAGGTGTGTATTCAATCCGCATTTCCCTTTAGTATATTGTATTTGATGTCGAATCTTGTGTTTTCGTTGTTCTTTCATTGATGATTTTACTGAGCTGTCTTTTGTAATATTTGATTATCCGTTTTGTTGGTTATATTTGAAGTTGTTTCTTTGAAGTGATTTGCCTGCTCTTAGGGTTATGAAGAATATAGAGGAGTTTCTTCTTCAATTGTCGTTTTTGTATGAAAGGATTGTTTTTGTGAAAGGTTGCGGTATGCTATTTTGTTGGTCTTTGTGGTGAGAGGAATAAGGGAGAATCAATAGAGGATTAAGGGAGTTCTTCTAGCGATATTTGGTCCCTTATTAGATTCAATGTTTCCTTTTGGGTGTTGGTAATTAGGCCTTTTTTGTAATGATTTTGTACGTCATATTTTACTAAATTGGAGCTCCTTTTTGTAGTTTGAGTATATCTCATTTGTGGGTTTTATTTCTGTATGCCATTGGATTCTACTATTTTTCTCGTGGAACCTTCAACCATTCTTAAAGAGGCAACAAGTTGTTGGCCATGGCCTGCTAATGATATGTTCATAAAATTGAAGTGGAGTGGTAATGGGGAGTAAGGTGCATACAAATTGACTTGAACATTGATTACCTTTTTTTGCTCTGCTCTTATTAGTTCATTAGTTTTATGTATTCGTTCGGCCCTTTGGTATATTTTGGCTTTGGGCAGTTCAGACGTTTCCTTAATGGGCTGCCTTCTCTTTTTTCATAGTTTGAATTAATAAGAATCAAACTTTTTGGTCACACCTGATATGATAATTTTCTTTAATTTTAAACAAACAAGGATCATGGCAAGGATCCAATGTACTGCACATTGCCAGTAGTTGGCTAGGATGGCTTATTGTGTCATGTCCATTGCTCTGGGGTGGACAATTGTTGTTCATTCTCAGAATCCAATGTACTTGGAATTCTTACCAGCTCGATATCCTAAACATTTGTGTCTGGTTATTGTGTTATTTTAACCATATGTAACCATATTTTTTTGTAGGGTTATTCGTGAAGGAAAAGAACGTCGTAGACTATGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAATCGTTGAAGATTTAGCAGAACCTCCTAGAAATGACGACAAAATTAGCAAATTGGGAACGCTTCCTAGTAATATAGTCCAACTGCTTGTAGACTGTGAGAAGTATGTCTCTTCTCCTCTATTCATGTATTGCTGTGTAGATCATGATTTTGCCAAGTGACTAATATGGTATTCTCTCCATCTATAGACAAGTTTTCTCATCAGATTCGGGCGATGAAAAGCCAGCAATTAAACCAAAACAAAAGAGGAAGAAGACCAAAAGCTCCGGGTAAGGGACCAGACCTGATTTAGAATGTCACACCTATTAATTTTAATGTACTTTCTGATTTAGAATGGTCTCTTATTTATTTTAATGCAGGATTGAAACGGTTCTTTTAAATGAAAGAACACCATCTCATTGTTTACAGAACTCCTTGGAATTTTTGAAGAAAAGGAAGATGAATGTTGCAAGATCATCAACGGTTCTCAGCAATCCTAATCAAGCGTTCCGGCTACTTTCTTCATCTGGCTTACTAACGAAGAAATAGCATTTTTGTTTCGTAGTTTACTTATTGCATCTCTGTTAGTTTCGACAGGATAATGTAAAATTGTATTCGAGAATTGGTTGGCGAGGGCTACAAAGGTTGTTGAGTTCTTATAGTGGTCATACCATAATAGAAATTTAAAATGGTGGGAGCATCTGATGTTGGTACATTAATGGTTTTCATTATCTTGGTTCGATTACTAGTGGCTTGATTTGAATATGTTTAAAAGTTTTTTAAAAACTCATTTACCTAAGAAGTTGAAATAACTAAAAGAGAAATGTATACAGTTGATGACAAGCACTTGACTTTGGTAGGCAATAGAATCATGTAATTGTGGGGAAGG

Coding sequence (CDS)

ATGTCGGACAGAGAGGAAACCGATTCGGACGCTCCCGAGGAGTTCACCGCCGAGCAGGGAGTACAACAAGATGAAGAGATTAGAAAAGTTCAAAAAGAAAGTAAGGCTAGGGTTATTCGTGAAGGAAAAGAACGTCGTAGACTATGGGCTGAAAAGAAAACACCACGCCCATCTAAAAAGGGTGAAATCGTTGAAGATTTAGCAGAACCTCCTAGAAATGACGACAAAATTAGCAAATTGGGAACGCTTCCTAGTAATATAGTCCAACTGCTTGTAGACTGTGAGAAACAAGTTTTCTCATCAGATTCGGGCGATGAAAAGCCAGCAATTAAACCAAAACAAAAGAGGAAGAAGACCAAAAGCTCCGGGATTGAAACGGTTCTTTTAAATGAAAGAACACCATCTCATTGTTTACAGAACTCCTTGGAATTTTTGAAGAAAAGGAAGATGAATGTTGCAAGATCATCAACGGTTCTCAGCAATCCTAATCAAGCGTTCCGGCTACTTTCTTCATCTGGCTTACTAACGAAGAAATAG

Protein sequence

MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKKGEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKQVFSSDSGDEKPAIKPKQKRKKTKSSGIETVLLNERTPSHCLQNSLEFLKKRKMNVARSSTVLSNPNQAFRLLSSSGLLTKK

Homology

[Close]

BLAST of Cucsat.G16007 vs. NCBI nr
Match: XP_004148046.1 (uncharacterized protein LOC101208336 [Cucumis sativus] >KGN62039.1 hypothetical protein Csa_006734 [Cucumis sativus])

HSP 1 Score: 177 bits (449), Expect = 3.03e-54
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVD EK V S
Sbjct: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. NCBI nr
Match: XP_008457855.1 (PREDICTED: uncharacterized protein LOC103497440 [Cucumis melo] >KAA0045851.1 uncharacterized protein E6C27_scaffold243G003840 [Cucumis melo var. makuwa] >TYK13737.1 uncharacterized protein E5676_scaffold299G002660 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 3.63e-53
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSDREETDSDAPEEFTAEQGVQQDEEIRKVQ ESKARVIREGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQNESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GEIVEDLAEPPRNDDK+SKLGTLPSN+VQLLVD EK V S
Sbjct: 61  GEIVEDLAEPPRNDDKVSKLGTLPSNVVQLLVDREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. NCBI nr
Match: XP_038901892.1 (uncharacterized protein LOC120088571 [Benincasa hispida])

HSP 1 Score: 160 bits (406), Expect = 1.07e-47
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSDRE+TDSDAPEEFTAEQGVQQDEEIRKVQKESKARV+REGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDREDTDSDAPEEFTAEQGVQQDEEIRKVQKESKARVVREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRND-DKISKLGTLPSNIVQLLVDCEKYVSS 100
           GE VEDLAEPPR+  D+ISKLG LPSNIVQLLVD EK V S
Sbjct: 61  GETVEDLAEPPRDHHDQISKLGMLPSNIVQLLVDREKQVFS 101

[Close]

BLAST of Cucsat.G16007 vs. NCBI nr
Match: XP_023006926.1 (uncharacterized protein LOC111499570 [Cucurbita maxima])

HSP 1 Score: 147 bits (371), Expect = 2.15e-42
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRK+QKES ARV+REGKERRR WAEKKTPRPSKK
Sbjct: 1   MSDPNDTDSDAPEEFTAEQGIQQDEEIRKLQKESSARVVREGKERRRQWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GE VED+AE PR++D++SKLG LPSN+VQLL + EK V S
Sbjct: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. NCBI nr
Match: KAG7035221.1 (hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145 bits (367), Expect = 8.69e-42
Identity = 78/100 (78.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRKVQKES ARV+REGKERRR WAEKKTPR SKK
Sbjct: 1   MSDSNDTDSDAPEEFTAEQGIQQDEEIRKVQKESSARVVREGKERRRQWAEKKTPRASKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GE VED+AE PR++D++SKLG LPSN+VQLL + EK V S
Sbjct: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. ExPASy TrEMBL
Match: A0A0A0LM07 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292200 PE=4 SV=1)

HSP 1 Score: 177 bits (449), Expect = 1.47e-54
Identity = 97/100 (97.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVD EK V S
Sbjct: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. ExPASy TrEMBL
Match: A0A5A7TWK6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002660 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 1.76e-53
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSDREETDSDAPEEFTAEQGVQQDEEIRKVQ ESKARVIREGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQNESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GEIVEDLAEPPRNDDK+SKLGTLPSN+VQLLVD EK V S
Sbjct: 61  GEIVEDLAEPPRNDDKVSKLGTLPSNVVQLLVDREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. ExPASy TrEMBL
Match: A0A1S3C749 (uncharacterized protein LOC103497440 OS=Cucumis melo OX=3656 GN=LOC103497440 PE=4 SV=1)

HSP 1 Score: 174 bits (442), Expect = 1.76e-53
Identity = 94/100 (94.00%), Postives = 96/100 (96.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSDREETDSDAPEEFTAEQGVQQDEEIRKVQ ESKARVIREGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQNESKARVIREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GEIVEDLAEPPRNDDK+SKLGTLPSN+VQLLVD EK V S
Sbjct: 61  GEIVEDLAEPPRNDDKVSKLGTLPSNVVQLLVDREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. ExPASy TrEMBL
Match: A0A6J1KZ49 (uncharacterized protein LOC111499570 OS=Cucurbita maxima OX=3661 GN=LOC111499570 PE=4 SV=1)

HSP 1 Score: 147 bits (371), Expect = 1.04e-42
Identity = 78/100 (78.00%), Postives = 89/100 (89.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSD  +TDSDAPEEFTAEQG+QQDEEIRK+QKES ARV+REGKERRR WAEKKTPRPSKK
Sbjct: 1   MSDPNDTDSDAPEEFTAEQGIQQDEEIRKLQKESSARVVREGKERRRQWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GE VED+AE PR++D++SKLG LPSN+VQLL + EK V S
Sbjct: 61  GETVEDVAETPRHNDQVSKLGMLPSNLVQLLAEREKQVFS 100

[Close]

BLAST of Cucsat.G16007 vs. ExPASy TrEMBL
Match: A0A6J1DXW1 (uncharacterized protein LOC111025162 OS=Momordica charantia OX=3673 GN=LOC111025162 PE=4 SV=1)

HSP 1 Score: 144 bits (363), Expect = 1.70e-41
Identity = 79/100 (79.00%), Postives = 87/100 (87.00%), Query Frame = 0


Query: 1   MSDREETDSDAPEEFTAEQGVQQDEEIRKVQKESKARVIREGKERRRLWAEKKTPRPSKK 60
           MSD E+TDSDAPEEFTAEQG+QQD+EI KVQ ESKARV+REGKERRRLWAEKKTPRPSKK
Sbjct: 1   MSDGEDTDSDAPEEFTAEQGIQQDQEITKVQNESKARVVREGKERRRLWAEKKTPRPSKK 60

Query: 61  GEIVEDLAEPPRNDDKISKLGTLPSNIVQLLVDCEKYVSS 100
           GE VED+AE P + D+ SKLG LPSN+VQLL D EK V S
Sbjct: 61  GETVEDVAEIPSHIDQSSKLGMLPSNLVQLLADREKQVFS 100

The following BLAST results are available for this feature:

BLAST of Cucsat.G16007 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G16007 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148046.1	3.03e-54	97.00	uncharacterized protein LOC101208336 [Cucumis sativus] >KGN62039.1 hypothetical ...	[more]
XP_008457855.1	3.63e-53	94.00	PREDICTED: uncharacterized protein LOC103497440 [Cucumis melo] >KAA0045851.1 unc...	[more]
XP_038901892.1	1.07e-47	89.11	uncharacterized protein LOC120088571 [Benincasa hispida]	[more]
XP_023006926.1	2.15e-42	78.00	uncharacterized protein LOC111499570 [Cucurbita maxima]	[more]
KAG7035221.1	8.69e-42	78.00	hypothetical protein SDJN02_02016, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Cucsat.G16007 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LM07	1.47e-54	97.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292200 PE=4 SV=1	[more]
A0A5A7TWK6	1.76e-53	94.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C749	1.76e-53	94.00	uncharacterized protein LOC103497440 OS=Cucumis melo OX=3656 GN=LOC103497440 PE=...	[more]
A0A6J1KZ49	1.04e-42	78.00	uncharacterized protein LOC111499570 OS=Cucurbita maxima OX=3661 GN=LOC111499570...	[more]
A0A6J1DXW1	1.70e-41	79.00	uncharacterized protein LOC111025162 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..76
None	No IPR available	PANTHER	PTHR36387	UDP-N-ACETYLMURAMOYL-L-ALANYL-D-GLUTAMATE-2, 6-DIAMINOPIMELATE LIGASE	coord: 4..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G16007.T1	Cucsat.G16007.T1	mRNA
Cucsat.G16007.T8	Cucsat.G16007.T8	mRNA
Cucsat.G16007.T5	Cucsat.G16007.T5	mRNA