Cucsat.G15953 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15953
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg2178: 325617 .. 326319 (-)
RNA-Seq Expression	Cucsat.G15953
Synteny	Cucsat.G15953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTAGAAAACCAGAGAAAAAAAAAAACAAAATATTTAAAAGTTCTAAATTTCTCAAATCCCAATCAAAAGTCTCAAGAACTCAAACACATATAAAGAAAAGGTAATGAAACAAAAAAAGAACAAAAGCCTTGTTAGTTATTCATATTTATTTTGTGTTAATTATCAACTTGAATCTTAGGGTTTGCTAATAACAATAATTTTATTGCTATTCTCTAATTTGTCAGATACAATGGATTATTCTTCAAATGGTTTCGCCATTGGAAAAGTAACTTCAAAGCAACAAAAATGGGCAGAAGCAGACGCAATGTTCTTGAGAAAACTAAGCTTAAACAAGAACGAGAATGAGAAGGAGAAGAAGATGAAGAAAGATGAGACATTGGGTTATTCCTCTTCAGTTTTTGGGTTTGAAAAATATAGAAGTAACGATATTATTAACTATTCAAGACAAAGGTATTTGAGAAGCTACAAATTTAACGATGATCATAAAGAAGATGATGTTGATCAGGTTCAAAAGACAAGTCCTTTTGAAAAGGTGATAAATTTTTTTAAATTAAAATCAATAGCAATGCCAATTAAGTAATAATTGCAACAATAGTTTAAGAGAGTATTAAGAGAGTATGAAAAGAGCATTTGGAAGTTCTTCTCTTTTGTTGTTGAGTTAATTGATAAAGTTTATGCTAATTAATTATAATCATAAACT

Coding sequence (CDS)

ATGGATTATTCTTCAAATGGTTTCGCCATTGGAAAAGTAACTTCAAAGCAACAAAAATGGGCAGAAGCAGACGCAATGTTCTTGAGAAAACTAAGCTTAAACAAGAACGAGAATGAGAAGGAGAAGAAGATGAAGAAAGATGAGACATTGGGTTATTCCTCTTCAGTTTTTGGGTTTGAAAAATATAGAAGTAACGATATTATTAACTATTCAAGACAAAGGTATTTGAGAAGCTACAAATTTAACGATGATCATAAAGAAGATGATGTTGATCAGGTTCAAAAGACAAGTCCTTTTGAAAAGGTGATAAATTTTTTTAAATTAAAATCAATAGCAATGCCAATTAAGTAA

Protein sequence

MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK

Homology

[Close]

BLAST of Cucsat.G15953 vs. NCBI nr
Match: KGN62030.1 (hypothetical protein Csa_006081 [Cucumis sativus])

HSP 1 Score: 229 bits (584), Expect = 1.18e-75
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60
           MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE
Sbjct: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60

Query: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 116
           KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK
Sbjct: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 116

[Close]

BLAST of Cucsat.G15953 vs. NCBI nr
Match: KAG6605255.1 (hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 5.50e-12
Identity = 46/97 (47.42%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 17  QQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYS---SSVFGFEKYRSNDIINYSRQ 76
           Q KWAEADA FL++LSLNKN  E            YS   SS+ GFE  R+N+I  YSRQ
Sbjct: 36  QNKWAEADATFLQRLSLNKNMTE---------ISSYSLHCSSLLGFETNRNNEIFKYSRQ 95

Query: 77  RYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110
           R+LRSY F+ + K        KT  F K   +F LKS
Sbjct: 96  RFLRSYTFSVEEK--------KTKRFGKARKWFNLKS 115

[Close]

BLAST of Cucsat.G15953 vs. NCBI nr
Match: XP_023006822.1 (uncharacterized protein LOC111499491 [Cucurbita maxima])

HSP 1 Score: 70.5 bits (171), Expect = 2.17e-11
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 17  QQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQRYL 76
           Q KWAEADA FL++LSLNKN  E         +  + SS+ GFE  R+N+I  YSRQR+L
Sbjct: 266 QNKWAEADATFLQRLSLNKNMTEI------SSSSSHCSSLLGFETNRNNEIFKYSRQRFL 325

Query: 77  RSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110
           RSY F+ + K        KT  F K   +F LKS
Sbjct: 326 RSYTFSVEEK--------KTKRFGKARKWFNLKS 345

[Close]

BLAST of Cucsat.G15953 vs. ExPASy TrEMBL
Match: A0A0A0LJK1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1)

HSP 1 Score: 229 bits (584), Expect = 5.74e-76
Identity = 116/116 (100.00%), Postives = 116/116 (100.00%), Query Frame = 0


Query: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60
           MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE
Sbjct: 1   MDYSSNGFAIGKVTSKQQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFE 60

Query: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 116
           KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK
Sbjct: 61  KYRSNDIINYSRQRYLRSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKSIAMPIK 116

[Close]

BLAST of Cucsat.G15953 vs. ExPASy TrEMBL
Match: A0A6J1KWW2 (uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.05e-11
Identity = 44/94 (46.81%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 17  QQKWAEADAMFLRKLSLNKNENEKEKKMKKDETLGYSSSVFGFEKYRSNDIINYSRQRYL 76
           Q KWAEADA FL++LSLNKN  E         +  + SS+ GFE  R+N+I  YSRQR+L
Sbjct: 266 QNKWAEADATFLQRLSLNKNMTEI------SSSSSHCSSLLGFETNRNNEIFKYSRQRFL 325

Query: 77  RSYKFNDDHKEDDVDQVQKTSPFEKVINFFKLKS 110
           RSY F+ + K        KT  F K   +F LKS
Sbjct: 326 RSYTFSVEEK--------KTKRFGKARKWFNLKS 345

The following BLAST results are available for this feature:

BLAST of Cucsat.G15953 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G15953 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62030.1	1.18e-75	100.00	hypothetical protein Csa_006081 [Cucumis sativus]	[more]
KAG6605255.1	5.50e-12	47.42	hypothetical protein SDJN03_02572, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023006822.1	2.17e-11	46.81	uncharacterized protein LOC111499491 [Cucurbita maxima]	[more]

BLAST of Cucsat.G15953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJK1	5.74e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287120 PE=4 SV=1	[more]
A0A6J1KWW2	1.05e-11	46.81	uncharacterized protein LOC111499491 OS=Cucurbita maxima OX=3661 GN=LOC111499491...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15953.T1	Cucsat.G15953.T1	mRNA