Cucsat.G15683 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15683
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg2009: 5759926 .. 5764502 (+)
RNA-Seq Expression	Cucsat.G15683
Synteny	Cucsat.G15683

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGGAGCCGCATCAGAAACAAACAAAAATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCCAAGGACAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGGTACGGTTTCCGAATCCCTTTTCATCTCTTTGTTTTCATAGATCTTGTAACCAATTTCCTCTGTTTTGCGTGATTTGTGTAGAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTCTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGGTCAGGAGTTTTGGCTTTTCACTTAAGTTTCTCTAGATTTCACTGTTTTGTGAATTGGGCTCTCGTTTGATTTATTGTTTCGCGAGGTTGGGCTACTTCTATTTTAGAAATCTTTATTCATCGTATCAAAAGTAATAATTAGGTTTGATCTATGCCCAATTTCAGTGTTTGGTATACTATTGATAATTTTTTTACATTGCTAGATGAATCTATATCTATGGCATGTAGGTTATGAAGGGAGAAATATTTCGGTTGTTAGAATAGTGTTTTAGCTATGATTCTATGAAGTATTAAGTTGGCCATTGATGACTTCATCGTGTCCCTTTCCTACATACTCCTTGACTTCCTTGTTTCTTAGAGGTTCTCCATGAAAATCATATTCTCCTTTCAAACAAAATTATCCTGAGAGTTTTCTTACCAATTCGTACTGTTTGCACCGTTCAATCAATAATGTAGGATATATTGAACTTTACTATTCAAGGACACAGTTGTACAACATGTTGAACAAATCCTGTTCAAGCAAGGTCTGTAAGATATATTTAACTAAACTATTCTTCTCAAAATTCTTACAATCACGAGGCGAAAACACATCTAGTCTTCTAGCTCAATCAATACCAAGCTTTAGAACGAAATTTGTTGTCCCATACCAAGCCTTATAGATTGCACGCTGTTAGCTATATAGAAGAACACTCATAGTGGGTAGTTTTGAATGAGGGAGCATTTGGAGTTCTGAATTGGTTATTATATTTTGCTGGAATAGTTTATAGGATTTAATAGTCTACCCCACCCAATTTAGGTAGGGGGCTTAAACGCCCGCTAATTGGTTGCTCAATTTACCCACTGATCTAGACTCTTACTTTAATCTTTGAACGTACGAAAGAGGGTGGAAAACCAAATTTTGTTGGGTGACGTATTTTGCTCACCTTTGCATAAGCATAATGATTGATGCATTCTACTTGATGTCTGCATGATTGTGCATTGTTTTCATTCCCTAATAACATTTGCATATATTAATTGATCAGTGTGATTGTTTGTGGATTGAACCCTTTTTGAGACATTATCTTGGGTAAATCTTTCAATTGGTTATGCCCTTCAATGTTCATTTATTGCGTGTTGAATCTGTTTTGCAGACAGCTGAGGCCACAAAAGGAGCAGGCCGGACAATATAGAAGAATGGAACTTGATCAACTATTTCAAATCCTTACCAATGTTATTATTAATTTAAAAAGCTTAATTTATTTTCTAGAGAAGTATAAAACTCCATGAATGGCTGTAACGAATTGCTAGGATTATGTCTTACTCCTGATTGATCCAGTGTCCTTGTTCATGGTCACTGGTTATTTTAGAGTATAGTGACTAAGTTTTTGCTTTATCATATGAAAGTTGGCTTCATCATTGGTATGAAAACTGTAGTTTTCCCCTCTCCTTCATCTCGTCAGGTGTCCGCAAATTGAACTAATTAACTTTGAAATGGCCAAGGAAGCCAAGATATTTTCAGTAAGGTGCGGTCGTGCACTCGAATGCACATAACATTTTTGTATAATAGATGTTTCATGTAGCATATCATTATTTTTTGGGTCAAATTTTGACTTTTGGACTAAACAGAGGTGGGACTCGTCCTTTGAACAATCTCCTGAATCTCTTCTGATGACAGGATTGATGCTGAACTGTCAAATTCCACACTCTCCAGCTGCTGGTGTAACTGGAGACAAACGAGAAACAGAAACATTAAGTCACCAATATGGGGTATATAATTAACACAACCACCTAATCAGATTGCAATTTGTTTCCCTCAAAATAGTTATCTTGTTGAAAGAGAAAACTGCAAACCTTCTCGAGAATGGCGGATTGATCATAAGAGTGTAGCTTGCGCATATGTTGCAGCATCTCCAGTTGCTGTATGAAGAGTACATTCAGTTTCCAACCACTATTCGTATTCAAAATATTTGCTTTCATGTAGTTTGACACGGCCAAGGAAATAAAGGTTGTCACCTTACCTTATCATGTAGTTTTTGTTGATTATTCATTTTTTCTGCAAAATCATCTGGTTCAAGCTCTGCTTCATCACAAGCCATCTCTTCCCTATCATATTTTTCAGCACAATTTCAATTAATCTATGAGCTCTTACTTCTACAGAGTTCAGTAAAAAGAACAAGAAGAGTTCAGAATAAATCAAAAGGAAGAAGACAAATGCACACATACAAATACGCTGGTAAAAATGAGCTCTCTCTATGCTATCATCAGATTATCAATTCATATGATGAGTTGAATGACAGTTTTCAACTTTTGCATTCGGTTATTTTATTTTTTATCCTTTTATTTGGCTAGAGAGGTTGTTCAAAACAGAAAAATGGCTTACATTGCGACGAACTTGTAGAAATGAACCATGAGCTCGTGATCATTCTCATAATATGAACTCACTTTCCCTAGACAGGATATACCAAATCCTGCATCTGTAGAAGAAACAAAGATCAACACAAGCATAAATGTTCTAGGTTATTGGATTATGAAAGATGGCCAATGGCACAACAATCCAGCACAAATAGGAATTTTAGGTATGTTTTAATTTTTTAAAAAATGCTAATGCTCACTAAAAATATTCAAATTAAACAGCACACTAGAAACAAGATGATTAAACAGAAGAGTTCAAAATTTATAGAATGACAGAGAAACCTTTCAATCAAAAGAGAATGCAGAGCCACTACCAGATAAGATGCTTCACAGGCTAGATCATGAAACTAGAACAAGCAGTTTCCACTATTCAAATGGGAAAAAAGAAAAAAAAAACAAAAAAACAAATCATGATTTCAAGGAAAGTGACAAAAGAATAGGCAAAACTTAAAAAACAGTAATGTACTACAAAAGCTGACCAACTCCCATTTCCGAAAAAATCTCCTCCTGAATTGCTGTTGTCACAGCAACGGCTTCCTGCAGGATCAACAAAAACTTCCAGAATAAGAACAACTCACTGAAGTACCAAAAACTTCTCATCATCTACAGTTACACCATTGACTTTCAGCACTACCGTACTATCACAAACTCAAATTCTTATGGTTTGAAAATTGAAAACCTTGAATTAAAGAATGAACCTAAGACCTAGGTACATAACAAGGACAAAAAGGAAATAGTACTTATGATCAAAGCAAGAACAGTGGCTGATGGAGGGGCAATAGAGATTATAAAAGAGAACCCTCACAAACCCAATTCCACCGTAAGAAACCACAAGTTTTCTGTCAACCCGATGTGGGTGAATTCGGAAATTGTCCTATGAGATTAGGCCAAATGTGCTCAAGCTGCCCTAGACACTACGAAAAAGAAACATACAAACAAACAAAACAAACCCATTTCCCCTGAATAAATGGGGGTTTGTGAAGAAAGCTTAACCTATCCATACAAATTATTCCAAGAGACAAGGAACGAAACCCCATTTTGTAATAGGCAGTGACAAGTAACAAGGAAACATCTAAATCAAAAACCATTGAAGTAGAAACGAAATTTGAAGAAGACTCACCTGATTGTCATCCCGAACAGCATCGGCGATCCGTTTCTTCACATCTGTAAGATTAAGAGGAGAAACAAAACGATGATTCAGGGGAAATGAGGAGTGGGAAAGCGGAAAGAAAAGAGTAATGCAAGATTAGAACCAGAGAGAGAAGTGAGTTGAGAAAAGCGATTAAAAAGATGAAACAACTGGTCTCTAGAAAGCATCGAAGAAAAAGGAAGGGTTTGAGGAATGCCGGAAGAAATCGCCATGGCCATGGCCGGAAGGAGAGGTGGATATGGAACCACGAAAGAAGACTGATTGATTAGATGTAATGTAGGGCCCTTTTTCCCGATTCTCAGTTGGGCCCTCGGCAGAATTTTACCATGGATTTGAAGGAACCCATTTCAAGTTTGGAGGAAACAAGAAAAGTTAATTTCAAGAAAGATTTAGTTTTTGCCACCATTAATTAATGCTCATTGCTTGGTGGTATTGAACTATTGGTATTGGAATCAAGACTTTAGGTTTAAATGTTTCTTTCTCTTCTTTTTAGATAGTCGTGATTATTATATTTGAAGTTTTGAACACTTTCTTCTTCTTCTTTTTTTCTCCACTTGTTTTTTGTAAGGTAAATGGTAGATGATACCCACTAAGTTAAGTTGACAGTTGCAACACAATTACACAACTTCCAAGTCTAACAATCCAATTCTCGAAACTTTTGCAAATGTAAAAATTACTATTTCTTGGTGTGTGTATGCTTTAACCCTTCTCACTCCT

Coding sequence (CDS)

CGGAGCCGCATCAGAAACAAACAAAAATGGACGCCATTGATTCCGTCTTCGATCCACTCCGGGAGTTCGCCAAGGACAGCGTACGTCTCGTCAAGCGCTGTCACAAACCCGATCGCAAAGAGTTCACAAAGGTCGCGGTTCGTACAGCGATTGGCTTCGTCGTCATGGGATTCGTTGGTTTCTTCGTCAAGCTCATCTTTATCCCCATCAATAACATCATCGTCGGATCTGGCTAGGATTGATGCTGAACTGTCAAATTCCACACTCTCCAGCTGCTGGTGTAACTGGAGACAAACGAGAAACAGAAACATTAAGTCACCAATATGGGGTATATAA

Protein sequence

RSRIRNKQKWTPLIPSSIHSGSSPRTAYVSSSAVTNPIAKSSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLARIDAELSNSTLSSCWCNWRQTRNRNIKSPIWGI

Homology

[Close]

BLAST of Cucsat.G15683 vs. NCBI nr
Match: XP_020262796.1 (zinc finger protein CONSTANS-LIKE 1-like [Asparagus officinalis])

HSP 1 Score: 58.5 bits (140), Expect = 1.14e-07
Identity = 41/68 (60.29%), Postives = 46/68 (67.65%), Query Frame = 0


Query: 10  WTPLIPSSIHSGSSPRTAYVSSSAVTNPIAKSSQRSRFVQRLASSSWDSLVSSSSSSLSP 69
           WT L PS I S  S RTA+ SS   T+ IA+SS++ RF  R  S  WDSL SSSSSS SP
Sbjct: 40  WTRLNPSLIPSAISRRTAFASSRDATSQIARSSRKWRFGPRSDSLLWDSLGSSSSSSSSP 99

Query: 70  SITSSSDL 77
           S TSSSDL
Sbjct: 100 STTSSSDL 107

[Close]

BLAST of Cucsat.G15683 vs. NCBI nr
Match: AQL05199.1 (Protein transport protein Sec61 subunit gamma-3, partial [Zea mays])

HSP 1 Score: 48.9 bits (115), Expect = 4.76e-05
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 24 PRTAYVSSSAVTNPIAKSSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLARIDAE 83
          PRTA  SSSA T+P A+SS R R  +R  SSSW S  SS SSS SPS TSSS  AR    
Sbjct: 1  PRTASASSSAATSPTARSSPRWRRGRRSGSSSWASSASSLSSSSSPSTTSSSVPARSTGR 60

[Close]

BLAST of Cucsat.G15683 vs. NCBI nr
Match: RZB76239.1 (hypothetical protein D0Y65_034645, partial [Glycine soja] >RZB76240.1 hypothetical protein D0Y65_034645, partial [Glycine soja])

HSP 1 Score: 46.6 bits (109), Expect = 6.44e-04
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1  RSRIRNKQKWTPLIPSSIHSGSSPRTAYVSSSAVTNPIAKSSQRSRFVQRLAS 53
          R R R +++WT LI  SI SG+SPRTA  SSS  T+PIAK+S R   V R  S
Sbjct: 35 RRRDRQRREWTLLILCSIRSGNSPRTASGSSSDATSPIAKNSPRLLCVPRSVS 87

[Close]

BLAST of Cucsat.G15683 vs. ExPASy TrEMBL
Match: A0A0A0LXS8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097740 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.76e-11
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 0


Query: 41 SSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLAR 79
          SSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLAR
Sbjct: 34 SSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLAR 72

[Close]

BLAST of Cucsat.G15683 vs. ExPASy TrEMBL
Match: A0A1D6P5H8 (Protein transport protein Sec61 subunit gamma-3 OS=Zea mays OX=4577 GN=100282298 PE=4 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.31e-05
Identity = 36/61 (59.02%), Postives = 39/61 (63.93%), Query Frame = 0


Query: 24 PRTAYVSSSAVTNPIAKSSQRSRFVQRLASSSWDSLVSSSSSSLSPSITSSSDLARIDAE 83
          PRTA  SSSA T+P A+SS R R  +R  SSSW S  SS SSS SPS TSSS  AR    
Sbjct: 1  PRTASASSSAATSPTARSSPRWRRGRRSGSSSWASSASSLSSSSSPSTTSSSVPARSTGR 60

[Close]

BLAST of Cucsat.G15683 vs. ExPASy TrEMBL
Match: A0A445HRH0 (Uncharacterized protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_034645 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 3.12e-04
Identity = 29/53 (54.72%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 1  RSRIRNKQKWTPLIPSSIHSGSSPRTAYVSSSAVTNPIAKSSQRSRFVQRLAS 53
          R R R +++WT LI  SI SG+SPRTA  SSS  T+PIAK+S R   V R  S
Sbjct: 35 RRRDRQRREWTLLILCSIRSGNSPRTASGSSSDATSPIAKNSPRLLCVPRSVS 87

The following BLAST results are available for this feature:

BLAST of Cucsat.G15683 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G15683 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_020262796.1	1.14e-07	60.29	zinc finger protein CONSTANS-LIKE 1-like [Asparagus officinalis]	[more]
AQL05199.1	4.76e-05	59.02	Protein transport protein Sec61 subunit gamma-3, partial [Zea mays]	[more]
RZB76239.1	6.44e-04	54.72	hypothetical protein D0Y65_034645, partial [Glycine soja] >RZB76240.1 hypothetic...	[more]

BLAST of Cucsat.G15683 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXS8	2.76e-11	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G097740 PE=4 SV=1	[more]
A0A1D6P5H8	2.31e-05	59.02	Protein transport protein Sec61 subunit gamma-3 OS=Zea mays OX=4577 GN=100282298...	[more]
A0A445HRH0	3.12e-04	54.72	Uncharacterized protein (Fragment) OS=Glycine soja OX=3848 GN=D0Y65_034645 PE=4 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15683.T17	Cucsat.G15683.T17	mRNA