Cucsat.G15670 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15670
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg2009: 5385829 .. 5387944 (+)
RNA-Seq Expression	Cucsat.G15670
Synteny	Cucsat.G15670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTAAGAACTAAAGAAAACTTACAAATATCCGTTATGCTTGCAAAGATGAAAACGTAAAGTTATCTCCACCTCGACTTGTATGTTATTTCTACATTGAGTTCCAATTGTATATATTTTAGTGTTATTGTGAATTCAGTTCTAGAACGTCAGGACACGAGTAGACTGAAAAGCTTTATTATATTTTTCTAAGTATGATTACTGACACTAACATCTAATTTTAAATTTAAATGCAGAGATGAGTCTTGAAGAAGTGATAGGATATATTGCATCTGATGAACTTATTAAGGTAGTTTATGCCAAGAATGACATTGTACTCAACTCGTAATATTCTGATGCAAAAACTATAACACACTTAATTATTGCATTGTGCCAAGACCATATTGAAAAAAAAATGCAGCAAAATAGAAAAAGAAATTTCAAGAGGTAACTTATGGAAGCTCATTCGGGACTTCGATCTCCATGGAATTACAACATTAGGTATATGTCATTTATCTTGTTTGTTAATTTCCAATTTCTTTTCTTGGGGTTTGTGGGCTACTTTGGTTGATTCCTTTCTAGCAGATCTTGATGAACTCTCTGATGAAGACAAGTTTCAGGTTTGTAACGGCGTTTTACTTCTCCATGTAAATGAAGTAATAATTTTGTTGGTTGTATGTAAGTGAAGTCTTTAATTTGTTTGATTTAGTTTAGTGGCTTTAATTTATTTTGTTAATTTGATGGCTTTATTGGTTGTAATGTTTTGCTTATTTCTTTTAGTCTCTCACTTTTAAAAAATGGTTTGTTTCATTTCCACCACTCAAGTCAGGTAAATGGATTGAGTTAAGTTACAAGACTCTACACGAATTTCTCATAATACTTAGTTATTCAGATACAAAATTTAGGATACTTGTTTTATAGTGTACTTCAGGAAGCTAATGAAGCATTTACTTTAGGAATCTCACATGTAACTTAAGAATTGAGTAATTAGTCAGTTGACTTTCTTACTTGTTGATGTTAGACTTGACATGCAAGAAGCTCATGTTTTCTCCTCTGTTGATGGTTTCTCTTAATGTTTCTATCATCGATGGTTGGCCTTATGAGATAATATATAATTTAGGCATTTAAATTTTCTTCTCTATTTACTTTATGATCAATACTTGAAAGTTCACAAGAGCAATTCATTCTATCATCTTTTACTATTTTGTTTCAAGATGGTATATTGTTTTTCATATTTGGGGACCTGTAAATTTTATCTGATTATGACATATGATTGTTGAGTAATAAAAAAAACTTATTACATTTTTGTTTTTTCAGTACTGCGGTATTCCAAAATATGGACAGCTTGATCATGGAACAGATAATGAGGTACTATGCAACTCTTTCTTCTATACCTTTCAATTTGTTTTAACAAATGGAGAATCTTACAAGGGTATACTTTGCCACGTGCCACATAGTATAATGATGGGCACTTCATTCCAGTAACAAGCTCTAGCCCTAAATTGTCGCAAGCCAGCAATGAATGGTACGTTGATATATGTATATTTTGACACGAACCCCTTTAGTTGCCCAATCATCTGCATTCCACAAACTAGTATATATTCTCATTCATTGCTTGTTAGGAAAAGCTATTCCTTGATTATCGTAGTTGCGCAAAACTCTGATTGAAGTGCAATTTGGCTAACTGCATTTCAAGCCTTTTTTTTTTCGTCATGAACCTGAGTACTTGCTATAATCTTACTCTCTGTTTTAATAATCTGAGACAATTAGTGCATAATTATTCATAGTTCATCTTTATTTGTGATGATTGCCTAATACAAACTCTTGAACTTTAAGGACTAGGAATTATCTTAGCTTTTTTGTTGTAAGGACTAGGAATAAGGATATATTTGTGATATTGGCTTTCCATTTTTCACTCTTTGATGATTTGTTATTAATCAATTTTAGTGGTTATATATACTAAAACAAACTATTGAATTGCAATGATAGGTAATGCTAAATGTTGAAATTTTCTATAAGAGTTGTACTCTCTTGTCCTATGATGGATGTTTATATTCATGTTGTCTTTGTAGGTTTAACTGGAATCGACAACTTCATGAGTTTACTTTCAAAGAACATTTTCAGAGACGAACATTCT

Coding sequence (CDS)

ATGAGTCTTGAAGAAGTGATAGGATATATTGCATCTGATGAACTTATTAAGACCATATTGAAAAAAAAATGCAGCAAAATAGAAAAAGAAATTTCAAGAGGTAACTTATGGAAGCTCATTCGGGACTTCGATCTCCATGGAATTACAACATTAGGTATATGTCATTTATCTTGTTTGTTAATTTCCAATTTCTTTTCTTGGGGTTTGTGGGCTACTTTGGTTGATTCCTTTCTAGCAGATCTTGATGAACTCTCTGATGAAGACAAGTTTCAGTACTGCGGTATTCCAAAATATGGACAGCTTGATCATGGAACAGATAATGAGGTACTATGCAACTCTTTCTTCTATACCTTTCAATTTGTTTTAACAAATGGAGAATCTTACAAGGGTATACTTTGCCACGTGCCACATAGTATAATGATGGGCACTTCATTCCAGTAA

Protein sequence

MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLGICHLSCLLISNFFSWGLWATLVDSFLADLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQFVLTNGESYKGILCHVPHSIMMGTSFQ

Homology

[Close]

BLAST of Cucsat.G15670 vs. NCBI nr
Match: XP_031739042.1 (uncharacterized protein LOC116402814 isoform X1 [Cucumis sativus])

HSP 1 Score: 305 bits (782), Expect = 6.98e-105
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLGICHLSCLL 60
           MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLGICHLSCLL
Sbjct: 1   MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLGICHLSCLL 60

Query: 61  ISNFFSWGLWATLVDSFLADLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQF 120
           ISNFFSWGLWATLVDSFLADLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQF
Sbjct: 61  ISNFFSWGLWATLVDSFLADLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQF 120

Query: 121 VLTNGESYKGILCHVPHSIMMGTSFQ 146
           VLTNGESYKGILCHVPHSIMMGTSFQ
Sbjct: 121 VLTNGESYKGILCHVPHSIMMGTSFQ 146

[Close]

BLAST of Cucsat.G15670 vs. NCBI nr
Match: XP_031739043.1 (uncharacterized protein LOC116402814 isoform X2 [Cucumis sativus])

HSP 1 Score: 232 bits (592), Expect = 2.59e-76
Identity = 118/146 (80.82%), Postives = 118/146 (80.82%), Query Frame = 0


Query: 1   MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLGICHLSCLL 60
           MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTL         
Sbjct: 1   MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTL--------- 60

Query: 61  ISNFFSWGLWATLVDSFLADLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQF 120
                              DLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQF
Sbjct: 61  -------------------DLDELSDEDKFQYCGIPKYGQLDHGTDNEVLCNSFFYTFQF 118

Query: 121 VLTNGESYKGILCHVPHSIMMGTSFQ 146
           VLTNGESYKGILCHVPHSIMMGTSFQ
Sbjct: 121 VLTNGESYKGILCHVPHSIMMGTSFQ 118

[Close]

BLAST of Cucsat.G15670 vs. NCBI nr
Match: XP_031744028.1 (uncharacterized protein LOC116404763 isoform X13 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.88e-08
Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1  MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLG 52
          MSLEE IGY+ASDELIK +               NLWKLIRDFDLHGI T G
Sbjct: 23 MSLEEAIGYVASDELIKDV---------------NLWKLIRDFDLHGIRTSG 59

[Close]

BLAST of Cucsat.G15670 vs. NCBI nr
Match: XP_031736310.1 (uncharacterized protein LOC116401824 isoform X4 [Cucumis sativus])

HSP 1 Score: 58.5 bits (140), Expect = 5.88e-08
Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 0


Query: 1  MSLEEVIGYIASDELIKTILKKKCSKIEKEISRGNLWKLIRDFDLHGITTLG 52
          MSLEE IGY+ASDELIK +               NLWKLIRDFDLHGI T G
Sbjct: 23 MSLEEAIGYVASDELIKDV---------------NLWKLIRDFDLHGIRTSG 59

[Close]

BLAST of Cucsat.G15670 vs. NCBI nr
Match: XP_031736308.1 (isovaleryl-CoA dehydrogenase, mitochondrial-like isoform X3 [Cucumis sativus] >XP_031736309.1 isovaleryl-CoA dehydrogenase, mitochondrial-like isoform X3 [Cucumis sativus])

HSP 1 Score: 55.8 bits (133), Expect = 7.29e-07
Identity = 35/65 (53.85%), Postives = 39/65 (60.00%), Query Frame = 0


Query: 1  MSLEEVIGYIASDELIKTILKKK----------CSKIEKEISRGN---LWKLIRDFDLHG 52
          MSLEE IGY+ASDELIK     K           +KI++  S  N   LWKLIRDFDLHG
Sbjct: 1  MSLEEAIGYVASDELIKFKESVKQFAQDNIAPHATKIDQPNSFPNDVNLWKLIRDFDLHG 60

The following BLAST results are available for this feature:

BLAST of Cucsat.G15670 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G15670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739042.1	6.98e-105	100.00	uncharacterized protein LOC116402814 isoform X1 [Cucumis sativus]	[more]
XP_031739043.1	2.59e-76	80.82	uncharacterized protein LOC116402814 isoform X2 [Cucumis sativus]	[more]
XP_031744028.1	5.88e-08	59.62	uncharacterized protein LOC116404763 isoform X13 [Cucumis sativus]	[more]
XP_031736310.1	5.88e-08	59.62	uncharacterized protein LOC116401824 isoform X4 [Cucumis sativus]	[more]
XP_031736308.1	7.29e-07	53.85	isovaleryl-CoA dehydrogenase, mitochondrial-like isoform X3 [Cucumis sativus] >X...	[more]

BLAST of Cucsat.G15670 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15670.T1	Cucsat.G15670.T1	mRNA