Cucsat.G15658 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G15658
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	DNA topoisomerase 2-binding protein 1 isoform X2
Location	ctg2009: 5012627 .. 5014410 (+)
RNA-Seq Expression	Cucsat.G15658
Synteny	Cucsat.G15658

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGCCGGACTTCCATCGACACAGAAAGTAATCGAAGACACTCTCCAAATTCTGAAGCCCAAGCCATTTGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGTCGATCACGTACGAAACGTCTCATCGATTTCTTGTTCAATTTATATGGCTACTTCGGATTTGCAATGTGTTTATTGGTTGTTGATTCCTGCTTTCAGGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAGGTATAGTTAATTTGTAGTTCCAGCCTTTTCTTTCTTTCTTTTGCGGAAAAGAATTGGAGAGAAATTTTGGACTGGAGAATGAGATTAACAGGAAATTGAATGTCTCCATTAATTTGTCAAAGGTATAGTTACCGAATTGCAGCTAATATTTGTCAGTGCATGCTGCATGTACGCAGTAGCCGAGTAATATATACTTCACTGCTCTCTCTTTCCGAATAGCCAAACCTAGTTGGTTGAAATTCTCATTTCAGTTCGACGTCATGGATTTGGTGCGTCGCTGACAACTTGAATTTCTGTTGGGAAGGTCCTCAGTGCGTGATGTCATGTGCAAAAAGAGCACAAACCTCTTCCTCAACAGGGTTATACTTGCTGCCTTGCCATGGATGGTGTGAAAATCTTGGCATCCGGTTTTCAGGAAGATGAAAAGGTACGTTGCAAATGTTCTTATTAGTAATTAGTAATTTTATTTTTGTAGAACTAATGACACAAAGTTGCATTGCAGGTTGAGATAGGGAAGTTAGTTAGTGCAATGGGGGGAGTATTGCATACGAAAGCATCACTAGATGTCAGTTTTGTTATCGCGAAGAATACTTTGGCTGCGAAATACAAGGTCGTGTTGCTTGAACTTTCGATTTTCTTGACGTGATATGTATGTGTATTTAGACCATTTCATGAATATCACGTGAATCATAAGATTTGAGTCAATTAAACTCCACAAAATTCAATTTTAAATCAATTTAGACCTTTAATCACGGTTACCTTTAAATTGATCTAATTGATATAATTATAAGTTTCACACGAAATTTTTCAAAAAAGAATGTAATAGAGGGCGTAAATTGATACACTAACAAAAGCCAGGGTTTAAATTGATACAATCTCTAAGGTTTAGGGGTATAAATTGATATTCTCCCTTAATTTAATTGTTAAATGTGTAATAGACTTAATAATGGTTTTTAGTTTTATTCTACCTGAAATGTTATTGCAAAGGTTTTGACAGATACTTTCATATTATTTTCTCTGTTTTCAGTGGGCACTAAACATTTCAAAGAAACCAATCGTGTCATTTTCTTGGTTACAACAATGCTGGATTGAACATTGTGTTGTGCCTCAGGAGGGATATCGGGTCCTTCCATTTTCTGGATTGAATATTTCGGTATCTGGAATTCCTGCAGGTTGTGTTTTATAATATTTTATTTATTCTCAGAGAAAATTGTTTTCTTGTATTTCTTCTTATTTATGGTGCTCATGGGGACATCCGATGAAATTGTGTTAGTTCCATCATTTCTGGGTCTCAGGTGAGCGCAAGGAGATGTCAAAGCTTATCTTGCAAAATGGTGGAAGATATTCTGCCGATCTCACAAGAAAGTGTACACATTTGATATGTGATATACCCTTTTTTCACTTTTTTTTCTTGGCATTACTTTTGATCTTTTCACTTCTTCTTGTTTGAAGCACTCAAATTTATGTGTTGGAAAAACATCTTACTGTAGCTTAAGTTACAGAATAAATGGATAAGGATAATAAATACTACTAAAAAAATTAACTTTGAACAATATGTCTTGGGATCTTTCATAAGGGCCTCTATTTATTTTCAAGTGCTATTGTTGGCCGTATTTGACCGTAATAG

Coding sequence (CDS)

AATGTGCTACAAAAGCTCAACTTCATTTCACAAAACCCTTCCGCCATTCACACTCTCAATCTTTCTTCCCTCCAATTTCTCACAAAATCCTCTCTCGCCGGACTTCCATCGACACAGAAAGTAATCGAAGACACTCTCCAAATTCTGAAGCCCAAGCCATTTGCCGGAGCTAATGTGTTCGTCTCTCGTAATCTTGTCGCACCGGAGATGTTCGATGCTTTTCACGACACTCTCAAGCAGAATGGGGCTGAGGTTTTCCTCTGTTGCGATCCCTCTCAAAACGCCCCTAACGATTATCATGTTATCTCCTCTGTCGATCACGTACGAAACGTCTCATCGATTTCTTGTTCAATTTATATGGCTACTTCGGATTTGCAATGTGTTTATTGGTTGTTGATTCCTGCTTTCAGGCAAAGTTCGAGGATCTTCGCGCCAAGGGATGCAACTTGTTAG

Protein sequence

NVLQKLNFISQNPSAIHTLNLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDHVRNVSSISCSIYMATSDLQCVYWLLIPAFRQSSRIFAPRDATC

Homology

[Close]

BLAST of Cucsat.G15658 vs. NCBI nr
Match: XP_031745330.1 (LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus])

HSP 1 Score: 197 bits (502), Expect = 9.32e-60
Identity = 94/101 (93.07%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 12  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCD 71
           SL GLPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCD
Sbjct: 118 SLVGLPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCD 177

Query: 72  PSQNAPNDYHVISSVDHAKFEDLRAKGCNLLGPQCVMSCAK 112
           PSQNAPNDYHVISS DHAKFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 178 PSQNAPNDYHVISSADHAKFEDLRAKGCNLLGPQCVMSCAK 218

[Close]

BLAST of Cucsat.G15658 vs. NCBI nr
Match: XP_031745331.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumis sativus])

HSP 1 Score: 197 bits (502), Expect = 7.35e-56
Identity = 94/101 (93.07%), Postives = 95/101 (94.06%), Query Frame = 0


Query: 12  SLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCD 71
           SL GLPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCD
Sbjct: 27  SLVGLPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCD 86

Query: 72  PSQNAPNDYHVISSVDHAKFEDLRAKGCNLLGPQCVMSCAK 112
           PSQNAPNDYHVISS DHAKFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 87  PSQNAPNDYHVISSADHAKFEDLRAKGCNLLGPQCVMSCAK 127

[Close]

BLAST of Cucsat.G15658 vs. NCBI nr
Match: XP_031745859.1 (LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Cucumis sativus])

HSP 1 Score: 192 bits (487), Expect = 1.74e-53
Identity = 91/97 (93.81%), Postives = 92/97 (94.85%), Query Frame = 0


Query: 16  LPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQN 75
           LPSTQKVIE TLQ+LKPKPFAGANVFVSRNLVA EMFD FHD LKQNGAEVFLCCDPSQN
Sbjct: 132 LPSTQKVIEATLQLLKPKPFAGANVFVSRNLVASEMFDPFHDALKQNGAEVFLCCDPSQN 191

Query: 76  APNDYHVISSVDHAKFEDLRAKGCNLLGPQCVMSCAK 112
           APNDYHVISS DHAKFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 192 APNDYHVISSADHAKFEDLRAKGCNLLGPQCVMSCAK 228

[Close]

BLAST of Cucsat.G15658 vs. NCBI nr
Match: KAE8649617.1 (hypothetical protein Csa_011937 [Cucumis sativus])

HSP 1 Score: 173 bits (438), Expect = 5.86e-52
Identity = 80/84 (95.24%), Postives = 81/84 (96.43%), Query Frame = 0


Query: 29  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH 88
           +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPSQNAPNDYHVISS DH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSQNAPNDYHVISSADH 60

Query: 89  AKFEDLRAKGCNLLGPQCVMSCAK 112
           AKFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 61  AKFEDLRAKGCNLLGPQCVMSCAK 84

[Close]

BLAST of Cucsat.G15658 vs. NCBI nr
Match: KAE8650752.1 (hypothetical protein Csa_017612, partial [Cucumis sativus])

HSP 1 Score: 169 bits (427), Expect = 2.29e-51
Identity = 81/88 (92.05%), Postives = 83/88 (94.32%), Query Frame = 0


Query: 1   NLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLK 60
           NLSSLQFLTKSSL GLPSTQKVIE TLQILKPKPF GANVF+SRNLVAPEMFDAFHDT K
Sbjct: 23  NLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFK 82

Query: 61  QNGAEVFLCCDPSQNAPNDYHVISSVDH 88
           QNGAEVFLCCDPSQNAPNDYHVISS +H
Sbjct: 83  QNGAEVFLCCDPSQNAPNDYHVISSANH 110

[Close]

BLAST of Cucsat.G15658 vs. ExPASy TrEMBL
Match: A0A0A0LB04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G529590 PE=4 SV=1)

HSP 1 Score: 166 bits (421), Expect = 3.41e-50
Identity = 79/90 (87.78%), Postives = 84/90 (93.33%), Query Frame = 0


Query: 1   NLSSLQFLTKSSLAGLPSTQKVIEDTLQILKPKPFAGANVFVSRNLVAPEMFDAFHDTLK 60
           NLSSLQFLTKSSL GLPSTQKVIE TLQILKPKPF GANVF+SRNLVAPEMFDAFHDT K
Sbjct: 43  NLSSLQFLTKSSLVGLPSTQKVIEATLQILKPKPFVGANVFLSRNLVAPEMFDAFHDTFK 102

Query: 61  QNGAEVFLCCDPSQNAPNDYHVISSVDHAK 90
           QNGAEVFLCCDP+QNAP+DYHVISS +H +
Sbjct: 103 QNGAEVFLCCDPAQNAPDDYHVISSANHVR 132

[Close]

BLAST of Cucsat.G15658 vs. ExPASy TrEMBL
Match: A0A5A7U8G5 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold207G00240 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.87e-45
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 29  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH 88
           +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 89  AKFEDLRAKGCNLLGPQCVMSCAK 112
            KFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAK 84

[Close]

BLAST of Cucsat.G15658 vs. ExPASy TrEMBL
Match: A0A1S4DV59 (DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.88e-45
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 29  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH 88
           +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 89  AKFEDLRAKGCNLLGPQCVMSCAK 112
            KFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAK 84

[Close]

BLAST of Cucsat.G15658 vs. ExPASy TrEMBL
Match: A0A1S4DV57 (DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103487611 PE=4 SV=1)

HSP 1 Score: 168 bits (425), Expect = 1.88e-45
Identity = 77/84 (91.67%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 29  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH 88
           +LKPKPFAGANVFVSRNLVAPEMFDA HD LKQNGAEVFLCCDPS+N PNDYHVISS DH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEMFDALHDALKQNGAEVFLCCDPSRNGPNDYHVISSADH 60

Query: 89  AKFEDLRAKGCNLLGPQCVMSCAK 112
            KFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAK 84

[Close]

BLAST of Cucsat.G15658 vs. ExPASy TrEMBL
Match: A0A6J1FES7 (DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443414 PE=4 SV=1)

HSP 1 Score: 163 bits (412), Expect = 1.08e-43
Identity = 74/84 (88.10%), Postives = 78/84 (92.86%), Query Frame = 0


Query: 29  ILKPKPFAGANVFVSRNLVAPEMFDAFHDTLKQNGAEVFLCCDPSQNAPNDYHVISSVDH 88
           +LKPKPFAGANVFVSRNLVAPE+FDA HD LKQNGAEVFLCCDP++N P DYHVISS DH
Sbjct: 1   MLKPKPFAGANVFVSRNLVAPEIFDALHDALKQNGAEVFLCCDPARNGPKDYHVISSADH 60

Query: 89  AKFEDLRAKGCNLLGPQCVMSCAK 112
            KFEDLRAKGCNLLGPQCVMSCAK
Sbjct: 61  EKFEDLRAKGCNLLGPQCVMSCAK 84

The following BLAST results are available for this feature:

BLAST of Cucsat.G15658 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G15658 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031745330.1	9.32e-60	93.07	LOW QUALITY PROTEIN: protein ECT2-like [Cucumis sativus]	[more]
XP_031745331.1	7.35e-56	93.07	LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-like, partial [Cucumi...	[more]
XP_031745859.1	1.74e-53	93.81	LOW QUALITY PROTEIN: DNA topoisomerase 2-binding protein 1-A [Cucumis sativus]	[more]
KAE8649617.1	5.86e-52	95.24	hypothetical protein Csa_011937 [Cucumis sativus]	[more]
KAE8650752.1	2.29e-51	92.05	hypothetical protein Csa_017612, partial [Cucumis sativus]	[more]

BLAST of Cucsat.G15658 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB04	3.41e-50	87.78	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G529590 PE=4 SV=1	[more]
A0A5A7U8G5	1.87e-45	91.67	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo var. makuwa OX=...	[more]
A0A1S4DV59	1.88e-45	91.67	DNA topoisomerase 2-binding protein 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S4DV57	1.88e-45	91.67	DNA topoisomerase 2-binding protein 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1FES7	1.08e-43	88.10	DNA topoisomerase 2-binding protein 1-A isoform X2 OS=Cucurbita moschata OX=3662...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G15658.T4	Cucsat.G15658.T4	mRNA
Cucsat.G15658.T2	Cucsat.G15658.T2	mRNA
Cucsat.G15658.T1	Cucsat.G15658.T1	mRNA
Cucsat.G15658.T5	Cucsat.G15658.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016853	isomerase activity