Cucsat.G14413 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G14413
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Pentatricopeptide repeat-containing protein
Location	ctg1869: 7586762 .. 7588397 (-)
RNA-Seq Expression	Cucsat.G14413
Synteny	Cucsat.G14413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAGCCCAGCCCCTCTCAAGTTTGCACTTTGCACGCCATATCCAATCTCCTCCACGGCTACCCTGCAAAAGGAGACCACCACGACTCAGCCGTCTGGGATTCCCGAGCTCCACCGTCTCCTCAACTTCGAGTTCGACGTTGCACCCAAACCAATGAAGAAGAATCGGTAGGAAGTGGTCATCGAAAAACCCAATTTCTAGAAGTCTCCAACTGATGCTCTTCATCTTGCTATGATACAATCAACTTTCATCCGCCCAAAAATCTTAGCCAAAGCGATGTCAATATGTTACTAATTACAAAAGGAAAACTGGAAACTGTGTTAATGTCTTTGAAGCATTGGGTTACTTTGCAGAATGTGCAGCTTAGGAGCAATATTGACCAAGTATTCTCTGTGCTCTGCTCTTAGTTCTTGTGCTAAAACACATAATCTGTTTTTGGGTTTGCAAATTCATGCTCAAATCGTCAAAATCGGATTTGAAGAGAACTTATTTTTGAACAGTTCACTGGTTGATTTATACTCCAAATGTAATGCCATTGTGAATGCCAAAAGGGTCTTCTCTCAGATGAAGACTCATGACCATGTATCTTGGACTTCTATAATATCAGGGCTTTCTCAAAATGGTTGTGGTAGTGAAGCCATCCTGATGTTCAAGAATATGTTGGTAACTCAGGTTAGACCCAACTGTTTTACTTATGCCACTGTTATTAGTTCATGCCCAACTTTGAAGAATGAACTTCAGATTCATCTTGCAACTTTGCTTCATGCCCATGTTATCAAATTTGGTTTTACTTTTAGCAGTTTTGTAATTAGCTCTACTATTGATTGTTACTCTAAACTAGGAAGAATACGAGAAGCAGCTCTGCTCTTTTCTGAGTCCAGTGTGAAGGATAATATCATATTTAATTCTATGATATCAGGGTATTCTCAAAACTTGTATGGGGAAGAAGCGTTAAAACTGTTTGTAGAAATGAGAGCTAGTAATTTGAGCCCAACTGATCATACATTAACTAGTGTTTTAAATGCTTGTGGGTGTCTAACAGTACTTGAACAAGGAAGGCAAGTTCACTCTCTTGTTACAAAAATGGGATCAGAAAATAATGTGTTTGTAGTCTGTTCTTTACTTGATATGTACTCAAAGTGTGGCAGCATCGATGAGGCATTTTCAATATTCAATCAGACAGTACAAAAGAACAGTGTGCTGTCTACATCGATGATTACGGCTTTTGCTCAATGTGGTAGAGGTTTAGAAGCATTAAAGCTCTTTGAGAGTTTGTTGACTGAAGATAGTTTTGTGCCTGATCATATCTGTTTTACCGCAGTTCTAACAGCTTGCAATCATGCAGGATTACTAGATGAGGCAGTTGAATATTTCAATAAAATGAGGCGTGAATACCATTTAGATCCTCAAATTGATCATTATGCTTGTTTGATTGATCTCTATGCCAGAAATGGGAATGTAGAAAAGGCCAAGCAAATGATGGAGCAAATGCCTTACGAATCTAATTACGTAGTTTTGTGTTCCCTCTTGGGTGCTTGTAAAGTTCATGCAGAGGTCGAGCTTGGGAGGGAGGTGGCACATCGACTCATTGAGATGGATCCAAGTAATGCTGCACCATATTTGACGCTTGCCCATATCTCTGCGAAAGCTGGTTTATGGACACAGGTGGGTGAGATTAGAAAAGAGATGCAACAAAAAAGGGTAAGGAAAAGTGCAGGGTGGAGTTGGATTGAGATAGATAAGAAAACTCATGTATTCTCAGTTGGTGATGCTGCTCATCCGAAATCATGTGAGATTTATTCAAAACTTGATCAACTGAATTTGGATATGAAAGCAGCTGAACAATCATCAAAAGCACTTGAGTATGACGTTGAGTGTTAATGTCAGTGATGGAATAGAGTTATTGTTTGAAGTTCTAATAGCAGACTAGTTGGAAATGAGAATCCAGGGGATTCACCTTTGCAGTGAATTCTTGGATGAGCAATACTCATATTTGTTTAGGATGGTTGGATTAGAAAAAATGGCGGAGACTACCAGGGTGTGGCAATCGATTGCAACCCATAGGTCTGTTTATGACAATAAAACACCAAAGTTAAGATTAATCAAATTGGAAGATGGGATCGTTGGCATTTTTGTTCCAGTAGGGTTACTGTGTTCCAATTGCAGGAAGGAAAAGAAAATGCCACTAGAAATCAAAGTAAGCAATCATGAATTAATAGAGAGAATTGGGTAGATGAAGATAGTGAAGAACATGGAATTGCAAAAGAGAAGCCTGAAAGGGGAAAAATGAACTATTCGGCCATGTTGATGAAGACCTTGGTTCAAGTAGCAAGAGCGAGAGCGAGGTTAAGAATTGAGAAACAACATAGAAGTGAAAGCTGATAATTGAGATGAAGAGAGTGAGTATCTAGGCCAACACGCTTGATTCAATTGGTCATTTATATAATTTCATGGATTGATGATGATGTGAAAAAAAATCAAAAGAACTTAGATTTTCAAAAAGGCAGATCAAATTTCATTTGGACATCTCGAAAATAGATAGATTGGTATAAAGATGTAGTCAAAACTCAGGAACCACTCCCATGGACACTTGTGCTTTCCTTTTTCAAGTTGTGTTTGAATTATGTCTTTGTAGTTCTTTTGATATTATAAATGAA

Coding sequence (CDS)

ATGAGGCGTGAATACCATTTAGATCCTCAAATTGATCATTATGCTTGTTTGATTGATCTCTATGCCAGAAATGGGAATGTAGAAAAGGCCAAGCAAATGATGGAGCAAATGCCTTACGAATCTAATTACGTAGTTTTGTGTTCCCTCTTGGGTGCTTGTAAAGTTCATGCAGAGGTCGAGCTTGGGAGGGAGGTGGCACATCGACTCATTGAGATGGATCCAAGTAATGCTGCACCATATTTGACGCTTGCCCATATCTCTGCGAAAGCTGGTTTATGGACACAGGTGGGTGAGATTAGAAAAGAGATGCAACAAAAAAGGGTAAGGAAAAGTGCAGGGTGGAGTTGGATTGAGATAGATAAGAAAACTCATGTATTCTCAGTTGGTGATGCTGCTCATCCGAAATCATGTGAGATTTATTCAAAACTTGATCAACTGAATTTGGATATGAAAGCAGCTGAACAATCATCAAAAGCACTTGAGTATGACGTTGAGTGTTAA

Protein sequence

MRREYHLDPQIDHYACLIDLYARNGNVEKAKQMMEQMPYESNYVVLCSLLGACKVHAEVELGREVAHRLIEMDPSNAAPYLTLAHISAKAGLWTQVGEIRKEMQQKRVRKSAGWSWIEIDKKTHVFSVGDAAHPKSCEIYSKLDQLNLDMKAAEQSSKALEYDVEC

Homology

[Close]

BLAST of Cucsat.G14413 vs. ExPASy Swiss-Prot
Match: Q9SI53 (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.1e-16
Identity = 43/98 (43.88%), Postives = 67/98 (68.37%), Query Frame = 0


Query: 5   GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNA 64
           G I  + +L S L +C     L LG+Q H  IVK  ++++L LN++LVD+Y KC ++ +A
Sbjct: 255 GFIAEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDA 314

Query: 65  KRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM 103
            RVF+QMK  D ++W+++ISGL+QNG   EA+ +F+ M
Sbjct: 315 LRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERM 350

[Close]

BLAST of Cucsat.G14413 vs. ExPASy Swiss-Prot
Match: O80647 (Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E33 PE=3 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.7e-16
Identity = 38/93 (40.86%), Postives = 65/93 (69.89%), Query Frame = 0


Query: 10  KYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFS 69
           KYS   AL +CA + +   GL+IH  I ++G E ++++ ++LV++Y K   +V+A++VF 
Sbjct: 100 KYSFTFALKACAGSMDFKKGLRIHDLIAEMGLESDVYIGTALVEMYCKARDLVSARQVFD 159

Query: 70  QMKTHDHVSWTSIISGLSQNGCGSEAILMFKNM 103
           +M   D V+W +++SGL+QNGC S A+L+F +M
Sbjct: 160 KMHVKDVVTWNTMVSGLAQNGCSSAALLLFHDM 192

[Close]

BLAST of Cucsat.G14413 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 3.5e-16
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 11  YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQ 70
           +++ S LS+CAK   L LG ++H  ++K+G   NL  ++ L+DLY++C  +  AK +F +
Sbjct: 223 FTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDE 282

Query: 71  MKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 107
           M   + VSWTS+I GL+ NG G EAI +FK M  T+
Sbjct: 283 MVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTE 318

[Close]

BLAST of Cucsat.G14413 vs. ExPASy Swiss-Prot
Match: Q9SIT7 (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E76 PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-15
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 5   GAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNA 64
           G +L +YS  S LS+C+  +++  G+Q+H+ I K  F  ++++ S+LVD+YSKC  + +A
Sbjct: 147 GFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDA 206

Query: 65  KRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNML 104
           +RVF +M   + VSW S+I+   QNG   EA+ +F+ ML
Sbjct: 207 QRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMML 245

[Close]

BLAST of Cucsat.G14413 vs. ExPASy Swiss-Prot
Match: Q9LW63 (Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H32 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.0e-15
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 15  SALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNAIVNAKRVFSQMKTH 74
           S + +CA    L LG Q+H  +++ GF  N+F+ S+LVD+YSKC  I  A+++F +M   
Sbjct: 348 SVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVL 407

Query: 75  DHVSWTSIISGLSQNGCGSEAILMFKNM 103
           D VSWT+II G + +G G EA+ +F+ M
Sbjct: 408 DEVSWTAIIMGHALHGHGHEAVSLFEEM 435

[Close]

BLAST of Cucsat.G14413 vs. NCBI nr
Match: XP_011653616.1 (pentatricopeptide repeat-containing protein At2g13600 [Cucumis sativus])

HSP 1 Score: 211 bits (536), Expect = 2.60e-63
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ
Sbjct: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. NCBI nr
Match: KGN64768.2 (hypothetical protein Csa_013273 [Cucumis sativus])

HSP 1 Score: 211 bits (536), Expect = 7.28e-63
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 356 MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 415

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ
Sbjct: 416 IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 461

[Close]

BLAST of Cucsat.G14413 vs. NCBI nr
Match: XP_038896055.1 (pentatricopeptide repeat-containing protein At3g12770-like [Benincasa hispida])

HSP 1 Score: 202 bits (513), Expect = 6.77e-60
Identity = 102/106 (96.23%), Postives = 103/106 (97.17%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LTKYSLCSAL+SCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAKLTKYSLCSALNSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IVNAKRVFS MKTHD VSWTSIISGLSQNGCGSEAILMFKNMLVTQ
Sbjct: 61  IVNAKRVFSHMKTHDQVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. NCBI nr
Match: XP_008464861.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis melo] >KAA0051921.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK12241.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (505), Expect = 1.10e-58
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IVNAKRVFS+MKTHD VSWTSIISGLSQNGCGSEAILMFK MLVTQ
Sbjct: 61  IVNAKRVFSRMKTHDQVSWTSIISGLSQNGCGSEAILMFKKMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. NCBI nr
Match: XP_023521522.1 (pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo] >XP_023523312.1 pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 182 bits (462), Expect = 2.34e-52
Identity = 92/106 (86.79%), Postives = 99/106 (93.40%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS+LV+LYSKCNA
Sbjct: 1   MCSLGAKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIGFEDNLYLNSALVNLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IV+AKR+F  MKTHD VSWTSIISGLSQNG G EAILMFKNMLVTQ
Sbjct: 61  IVDAKRIFVHMKTHDQVSWTSIISGLSQNGAGREAILMFKNMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. ExPASy TrEMBL
Match: A0A5A7UEE6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00490 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 5.35e-59
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IVNAKRVFS+MKTHD VSWTSIISGLSQNGCGSEAILMFK MLVTQ
Sbjct: 61  IVNAKRVFSRMKTHDQVSWTSIISGLSQNGCGSEAILMFKKMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. ExPASy TrEMBL
Match: A0A1S3CML0 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=3656 GN=LOC103502628 PE=4 SV=1)

HSP 1 Score: 199 bits (505), Expect = 5.35e-59
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LT YSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA
Sbjct: 1   MCSLGAKLTTYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IVNAKRVFS+MKTHD VSWTSIISGLSQNGCGSEAILMFK MLVTQ
Sbjct: 61  IVNAKRVFSRMKTHDQVSWTSIISGLSQNGCGSEAILMFKKMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. ExPASy TrEMBL
Match: A0A6J1K975 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita maxima OX=3661 GN=LOC111493402 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.59e-52
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS LV+LYSKCNA
Sbjct: 1   MCSLGAKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIGFEDNLYLNSGLVNLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IV+AKR+F  MKTHD VSWTSIISGLSQNG G EAILMFKNMLVTQ
Sbjct: 61  IVDAKRIFVHMKTHDQVSWTSIISGLSQNGAGREAILMFKNMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. ExPASy TrEMBL
Match: A0A6J1GA23 (pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita moschata OX=3662 GN=LOC111452173 PE=4 SV=1)

HSP 1 Score: 182 bits (461), Expect = 1.59e-52
Identity = 92/106 (86.79%), Postives = 98/106 (92.45%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MCSLGA LTKYSLCSAL+SCAKT NLFLGLQIHAQIVKIGFE+NL+LNS LV+LYSKCNA
Sbjct: 1   MCSLGAKLTKYSLCSALNSCAKTINLFLGLQIHAQIVKIGFEDNLYLNSGLVNLYSKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IV+AKR+F  MKTHD VSWTSIISGLSQNG G EAILMFKNMLVTQ
Sbjct: 61  IVDAKRIFVHMKTHDQVSWTSIISGLSQNGAGREAILMFKNMLVTQ 106

[Close]

BLAST of Cucsat.G14413 vs. ExPASy TrEMBL
Match: A0A6J1DYD1 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111025730 PE=4 SV=1)

HSP 1 Score: 170 bits (431), Expect = 3.66e-48
Identity = 87/106 (82.08%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 1   MCSLGAILTKYSLCSALSSCAKTHNLFLGLQIHAQIVKIGFEENLFLNSSLVDLYSKCNA 60
           MC LGA LTKY+LCSAL+SCAKT NLF GLQIHAQIVKIG EENLFLNS+LVDLY+KCNA
Sbjct: 1   MCXLGAKLTKYALCSALNSCAKTLNLFNGLQIHAQIVKIGXEENLFLNSALVDLYAKCNA 60

Query: 61  IVNAKRVFSQMKTHDHVSWTSIISGLSQNGCGSEAILMFKNMLVTQ 106
           IV+AKRVF  M+THD VSWTS+ISGLS+NG GSEAI MFK MLVTQ
Sbjct: 61  IVDAKRVFFGMRTHDQVSWTSLISGLSENGRGSEAIFMFKEMLVTQ 106

The following BLAST results are available for this feature:

BLAST of Cucsat.G14413 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI53	2.1e-16	43.88	Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidop...	[more]
O80647	2.7e-16	40.86	Pentatricopeptide repeat-containing protein At2g39620 OS=Arabidopsis thaliana OX...	[more]
A8MQA3	3.5e-16	42.71	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9SIT7	1.8e-15	40.40	Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana OX...	[more]
Q9LW63	3.0e-15	43.18	Putative pentatricopeptide repeat-containing protein At3g23330 OS=Arabidopsis th...	[more]

BLAST of Cucsat.G14413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011653616.1	2.60e-63	100.00	pentatricopeptide repeat-containing protein At2g13600 [Cucumis sativus]	[more]
KGN64768.2	7.28e-63	100.00	hypothetical protein Csa_013273 [Cucumis sativus]	[more]
XP_038896055.1	6.77e-60	96.23	pentatricopeptide repeat-containing protein At3g12770-like [Benincasa hispida]	[more]
XP_008464861.1	1.10e-58	95.28	PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Cucumis m...	[more]
XP_023521522.1	2.34e-52	86.79	pentatricopeptide repeat-containing protein At2g13600-like [Cucurbita pepo subsp...	[more]

BLAST of Cucsat.G14413 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UEE6	5.35e-59	95.28	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CML0	5.35e-59	95.28	pentatricopeptide repeat-containing protein At2g13600-like OS=Cucumis melo OX=36...	[more]
A0A6J1K975	1.59e-52	86.79	pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita maxima O...	[more]
A0A6J1GA23	1.59e-52	86.79	pentatricopeptide repeat-containing protein At2g13600-like OS=Cucurbita moschata...	[more]
A0A6J1DYD1	3.66e-48	82.08	pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charanti...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 143..163
None	No IPR available	PANTHER	PTHR47925:SF70	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 1..155
None	No IPR available	PANTHER	PTHR47925	OS01G0913400 PROTEIN-RELATED	coord: 1..155
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..152 e-value: 3.6E-14 score: 54.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 14..37 e-value: 4.8E-6 score: 24.4
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 14..38 e-value: 6.3E-5 score: 23.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G14413.T2	Cucsat.G14413.T2	mRNA
Cucsat.G14413.T1	Cucsat.G14413.T1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0022857	transmembrane transporter activity