Cucsat.G11548 (gene) Cucumber (B10) v3

Overview
NameCucsat.G11548
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description50S ribosomal protein L35
Locationctg1808: 544459 .. 547010 (-)
RNA-Seq ExpressionCucsat.G11548
SyntenyCucsat.G11548
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GCTTCACTTTATCCGAACAGCAGGCCAAGTCTGAGGCTCGTAGAGATTGGTAAGAAGAAGAGAGTCGAGACGCTTCGAAACTTCAGAAGCTATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGTCCCTCCACCACTCTCTCTTCTCTATATTTTTGTATGGTTAAATTCTGGTTGGATTCTGATTAATTTGAAGCTAATTTCAGTCTTCTAGATAGTTTGAACATATTTTGTTGTTTATTTCAAACGAATTTGTATTATAATACGAGAATGGCATGTTGAATTTTAAACCCTTTAAATCACCCAATTCTAGACGCTTACTGAATGAGCTAATAGCATTATGAATTGTTGAACAATACGCCTCTGTCTTCTCTGTTTTTACTGGGATTTTCCCTGTTCATTTTGATTTTATTGTTTTGTGTTACTGTTTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCTTCTTTATTTATTTTAATGTTCATGATTCTTTATTTGTTATGCTGCATTTCTAAACTTAGGTCCTTGAGTTTTTCTGGGAAAAGATTTATATAAATGGTCATAACTTAGCCAATGTAGCCACTACTTTCAATCCCTATGATTCTTCTCTAAGTTATCTACCAATTTCCCTCTCTTAAATGCAAGTTATCAAAGTAGTTATGTGAAGAATCTTACCGAAGTTGGAATGTACTTCCTCATTTGATTCAATCCCGATCATATTGTCAGCTAATAACGTGCATTCCAACTCAATTAACTTTGTATTGGAAGTATGATCTAATTTGAAGTTATTCATCGGTTGTCATGGTCTGTTCAGACAATAATCCCCAGAGCTATCATTGATGGTGATCTTGAAGATTTCACAAAGATCATTTAGGAAACAAGTTTTGTTTCGTTTTGTGCCCAAGACCTTGTCCAGGAACCCCAAGCACAAGAAAATATAGCTTCGAGCATACCTTTAGTTTTGGATCTTCAAAATTTTTTACACTAGCTATAGTGTTGATTGGTTTTTTATTGGTTGCTTCCGACTCCGAAATGGATAACCAATTGAGGGGGGGATATAAAGGGTACAATCTTCTTCCAACCTTGAACATTTTGAAGGGAGAGGTTCAAGAGACAAGATGACTTTTTGCCTATCACTTTCTCAGTTGATTTCTTGTAGTTGGAGTAATGGCTTACTCTGTAGATGCTTATGAGAGCATTAAAAGCAGTTCCTTATGGCCTTTTGTTCAAATCTGATTCCATCTTGATTGTTTCTGTCTGGTTTAGTCTGCTGATTTTCCCTGAGCATATAGACGTTTTGCGTTTTTATCATGTAGCATATGGTTAGTGAACTCTTAGATCAACAAAATACTTCACCTAGGAATTCCTTTTATCAACAATATTCACACATAAGATTCTGATACAAACACAAACTTCCTTGATACACAATGAACTGACCGTCCTATTCAGCCTCATCAATTGCCGAAACAAAATGAAGGTAAGAAGGTAAGAAATCCAACAAGGAAAATGATTTTGGTCACTTGTTTTGTTGAATGATGACCCCTGGAAAATTCTCATGCAGTTGTTCTATGTCTAGTTATGTTACTCAGTGTTTTCTTGATTGGTTTGTCTTAACACAGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAGAAGTGATGTTGGGATCTTGCCTGTACTTAACTTCATTTTGTAACCAAATGATTTTCAATTTTCCAGAACTCATCAAAGGGCAAAGTTTGATTGGTTAAAAATATTATTTGTTCTATTTATTCCCTCAGTTGATAATGGTACCTACTACCTTCTTTCAGTTCCCTTCCTCTATTGTTGGCTATTCTGACAGGCTACAAGATGGAGCTTATTTCTTCCGTAAATTATGAGTACCTGAGAGGGTTCAAGCCCATATGGAAAATATCTGGTTTGTTTTCTTAGTTTCGTCTCATATCATATTCATAAATATAGTAACGAAGAATTGTCAAAAATAGCAAATTTGATAAACTATTTATAACATATAGCAAAAATTTTAAATTCTATCAATAATAAACCTTGTGATAGAAGTCTTGTTAGTTTTTATCATTGGTAGAATTTAAAATTTTGCTATAACTTGTAAATATTTTACTATTTTTAAAAATATCCGTATAGTCGTCATATGTACTTAATAATGGATCTTTGAAGTTAAAATGATTTTACCCCATCGGTTATTGCTCCTTTATTATGAATGAGTTTTACACTATTTTTTTAAATAAATAAATACAGTAAATTGCCCCTTTTTCCCTTGTTTCTAAAGACAGATGCAAAGTTGTTTTGTTTCCTCTGATC

Coding sequence (CDS)

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTCTCCCCACTCTGCTCTCGCCCATCATTTCGCGTCTCTCATACTTCCGTCGGGATTGCTTCTGTCAACAAGGTCAATTCCTTGAAGCTCAGTTCCTCCCACAACATTTCCGGCTTTGGATTCAATTCCCTTCAGAAGCCATCTCACATTTCTCCCACTTCTCAAATTCGTACTCCTTTCACTGTTTTCGCTGCTAAAGGCTACAAAATGAAAACACACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATCGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTGCAAGAAAAACGCAAAGAGGAGATTACGGCTTTCCAAAATGCACCCAGTGAGCCGGAGTGACTATGATAATGTGATTGGTGCTTTGCCGTACTTGAAGGTGAATAGGCAGGCCCAGTAG

Protein sequence

MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRQAQ
Homology
[Close]
BLAST of Cucsat.G11548 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 1.8e-21
Identity = 76/128 (59.38%), Postives = 85/128 (66.41%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVS-HTSVGIASVNKVNSLKLSSSHNISGF-GFNSLQ 60
           MAS SMA S  + F       S +VS  +SV  A+        LSSSH+ISG      L+
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  KPSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAK 120
             +  SP SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RRLRLSKM 127
           R+LRLSKM
Sbjct: 121 RKLRLSKM 120

[Close]
BLAST of Cucsat.G11548 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-20
Identity = 72/138 (52.17%), Postives = 89/138 (64.49%), Query Frame = 0 

Query: 1   MASASMAVSF---GLRFSPLCSRPSFRVSHT-SVGIASVNK--VNSLKLSSSHNISGFGF 60
           MASA+  +SF    L  SP    PS R S    + +   NK   ++L LSSS +IS    
Sbjct: 3   MASATATLSFKTPSLSLSP----PSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKV 62

Query: 61  NSL----QKPSHISPTSQIRTP-FTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ 120
             +    ++ S +  +    +P FTVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQ
Sbjct: 63  QPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQ 122

Query: 121 HLLCKKNAKRRLRLSKMV 128
           HLL KKN KR+ RLSK++
Sbjct: 123 HLLAKKNTKRKNRLSKLI 136

[Close]
BLAST of Cucsat.G11548 vs. ExPASy Swiss-Prot
Match: Q31NR1 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmI PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSK 126
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQ 46

[Close]
BLAST of Cucsat.G11548 vs. ExPASy Swiss-Prot
Match: Q5N5F4 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmI PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 2.7e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSK 126
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQ 46

[Close]
BLAST of Cucsat.G11548 vs. ExPASy Swiss-Prot
Match: B2A5P0 (50S ribosomal protein L35 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) OX=457570 GN=rpmI PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 6.1e-06
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRRLRLSK 126
           KMKTHK +AKRF+ TG+GKI RR+A K H+L KK  KR+  L K
Sbjct: 3   KMKTHKGAAKRFKKTGKGKIKRRKAFKSHILTKKTPKRKRNLRK 46

[Close]
BLAST of Cucsat.G11548 vs. NCBI nr
Match: XP_004146668.1 (50S ribosomal protein L35, chloroplastic [Cucumis sativus] >KGN65186.1 hypothetical protein Csa_019888 [Cucumis sativus])

HSP 1 Score: 236 bits (602), Expect = 1.37e-77
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKM 126
           LRLSKM
Sbjct: 121 LRLSKM 126

[Close]
BLAST of Cucsat.G11548 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 221 bits (564), Expect = 8.46e-72
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKM 126
           LRLSK+
Sbjct: 121 LRLSKL 126

[Close]
BLAST of Cucsat.G11548 vs. NCBI nr
Match: KAA0035109.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa] >TYJ95970.1 50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 218 bits (554), Expect = 2.92e-70
Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKL 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKM 126
           LRLSK+
Sbjct: 121 LRLSKL 126

[Close]
BLAST of Cucsat.G11548 vs. NCBI nr
Match: XP_038878434.1 (50S ribosomal protein L35, chloroplastic [Benincasa hispida])

HSP 1 Score: 199 bits (507), Expect = 4.08e-63
Identity = 111/126 (88.10%), Postives = 114/126 (90.48%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVS GLRFSPL SRPS RVSH+SVG+AS NK NSLKLSSS+NISGFG   LQKP
Sbjct: 1   MASASMAVSCGLRFSPLYSRPSVRVSHSSVGLASFNKGNSLKLSSSNNISGFGVTFLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPT QI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KRR
Sbjct: 61  SHISPTPQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRR 120

Query: 121 LRLSKM 126
           LRLSKM
Sbjct: 121 LRLSKM 126

[Close]
BLAST of Cucsat.G11548 vs. NCBI nr
Match: XP_022135559.1 (50S ribosomal protein L35, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 182 bits (462), Expect = 2.04e-56
Identity = 103/128 (80.47%), Postives = 109/128 (85.16%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIAS-VNKVNSLKLSSSHNISGFGFNSLQK 60
           MASAS  VSFGLRFSPLCSRPS RVSH SV +AS  NKVNSL+L SS NISGFG   LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
             HI+PTSQ+ TP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKMV 127
           +LRLSKM+
Sbjct: 121 KLRLSKMI 128

[Close]
BLAST of Cucsat.G11548 vs. ExPASy TrEMBL
Match: A0A0A0LYX0 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 236 bits (602), Expect = 6.62e-78
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKM 126
           LRLSKM
Sbjct: 121 LRLSKM 126

[Close]
BLAST of Cucsat.G11548 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 221 bits (564), Expect = 4.09e-72
Identity = 119/126 (94.44%), Postives = 121/126 (96.03%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKM 126
           LRLSK+
Sbjct: 121 LRLSKL 126

[Close]
BLAST of Cucsat.G11548 vs. ExPASy TrEMBL
Match: A0A5D3B7R7 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00400 PE=3 SV=1)

HSP 1 Score: 218 bits (554), Expect = 1.41e-70
Identity = 118/126 (93.65%), Postives = 120/126 (95.24%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60
           MASASMAVSFGLRFSPLCSRPSFRVSHTSVG+AS NKVNSLKLSSSHNISGFG N LQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKL 60

Query: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120
           SHISPTSQI TPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKM 126
           LRLSK+
Sbjct: 121 LRLSKL 126

[Close]
BLAST of Cucsat.G11548 vs. ExPASy TrEMBL
Match: A0A6J1C1S3 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 182 bits (462), Expect = 9.85e-57
Identity = 103/128 (80.47%), Postives = 109/128 (85.16%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIAS-VNKVNSLKLSSSHNISGFGFNSLQK 60
           MASAS  VSFGLRFSPLCSRPS RVSH SV +AS  NKVNSL+L SS NISGFG   LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
             HI+PTSQ+ TP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKMV 127
           +LRLSKM+
Sbjct: 121 KLRLSKMI 128

[Close]
BLAST of Cucsat.G11548 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 181 bits (459), Expect = 4.14e-56
Identity = 103/127 (81.10%), Postives = 108/127 (85.04%), Query Frame = 0 

Query: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIAS-VNKVNSLKLSSSHNISGFGFNSLQK 60
           MASAS  VSFGLRFSPLCSRPS RVSH SV +AS  NKVNSL+L SS NISGFG   LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PSHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKR 120
             HI+PTSQ+ TP TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKM 126
           +LRLSKM
Sbjct: 121 KLRLSKM 127

The following BLAST results are available for this feature:
BLAST of Cucsat.G11548 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8VZ551.8e-2159.3850S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3... [more]
P233264.3e-2052.1750S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P... [more]
Q31NR12.7e-0663.6450S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80... [more]
Q5N5F42.7e-0663.6450S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S... [more]
B2A5P06.1e-0661.3650S ribosomal protein L35 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /... [more]
BLAST of Cucsat.G11548 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146668.11.37e-77100.0050S ribosomal protein L35, chloroplastic [Cucumis sativus] >KGN65186.1 hypotheti... [more]
XP_008443834.18.46e-7294.44PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo][more]
KAA0035109.12.92e-7093.6550S ribosomal protein L35 [Cucumis melo var. makuwa] >TYJ95970.1 50S ribosomal p... [more]
XP_038878434.14.08e-6388.1050S ribosomal protein L35, chloroplastic [Benincasa hispida][more]
XP_022135559.12.04e-5680.4750S ribosomal protein L35, chloroplastic isoform X2 [Momordica charantia][more]
BLAST of Cucsat.G11548 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LYX06.62e-78100.0050S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1[more]
A0A1S3B9R84.09e-7294.4450S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1[more]
A0A5D3B7R71.41e-7093.6550S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6J1C1S39.85e-5780.4750S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV... [more]
A0A6J1C5504.14e-5681.1050S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001706Ribosomal protein L35, non-mitochondrialPRINTSPR00064RIBOSOMALL35coord: 100..114
score: 48.25
coord: 82..99
score: 61.11
coord: 115..133
score: 31.83
IPR001706Ribosomal protein L35, non-mitochondrialTIGRFAMTIGR00001TIGR00001coord: 81..143
e-value: 3.2E-22
score: 76.6
IPR001706Ribosomal protein L35, non-mitochondrialPANTHERPTHR3334354S RIBOSOMAL PROTEIN BL35Mcoord: 1..150
IPR001706Ribosomal protein L35, non-mitochondrialHAMAPMF_00514Ribosomal_L35coord: 80..143
score: 15.27471
IPR021137Ribosomal protein L35PFAMPF01632Ribosomal_L35pcoord: 81..137
e-value: 5.9E-19
score: 68.3
IPR037229Ribosomal protein L35 superfamilyGENE3D4.10.410.60coord: 82..144
e-value: 9.2E-20
score: 73.0
IPR037229Ribosomal protein L35 superfamilySUPERFAMILY143034L35p-likecoord: 81..143
NoneNo IPR availablePANTHERPTHR33343:SF350S RIBOSOMAL PROTEIN L35coord: 1..150
IPR018265Ribosomal protein L35, conserved sitePROSITEPS00936RIBOSOMAL_L35coord: 84..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G11548.T1Cucsat.G11548.T1mRNA
Cucsat.G11548.T2Cucsat.G11548.T2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003729 mRNA binding
molecular_function GO:0003735 structural constituent of ribosome