Cucsat.G11539 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11539
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	APO protein 2, chloroplastic
Location	ctg1808: 425778 .. 428832 (-)
RNA-Seq Expression	Cucsat.G11539
Synteny	Cucsat.G11539

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAATCCGACGATTTGAGATATAGAAAACATTACCAATCATTTCGTTAAAAATCCTCCCAATGCCATGAAATTCCTCCTCGCATTCTTCTCTTTACCGTCACTACAAAGATAACTATCCTTAACCAAAAATCAAAGCTTCGGCATTCCGTTTCACTACTCCATCGATTTCCTTGTAAGTTCATAGTTCTCATTCTATTTCATTTCCCCCTTTCTTCATCTCTTGTTGTTGCTGGAGTATGAATTCTGGGTTTTCAGTATACGTTTCGTTTTGAGAGGTTTACGTTAAATTTACGCCGAAATTGATTTCCAGTTGAAGCTGATGACTTAGAAGTTATTAACTTTTGGTCGCCCCCCATGTGTTTGATAAAATTTGCTTTGTGTATTTTTTATTGTCACTTCGATTAGTTGCTATTATTTGTATAATTCAGTTACTTTTATTGATTTTCCATAATCTTTTTTAGCAACAGTTGCATAATGACGCGACTGCATTGATGTTGCCTTAAGGGGATGCTTTAAAATTTATCCTACTTTTGGACTCCCTTTGTTTTGAATGATTAATAGCTTAAACTATTCGAATATTTCTCTTTATTTTGCTCAATATGATTTTCCCGGCGGCATATTAATCCTGCATTGCTTGCCCCTCTTCTTTCTTTCCCTTTTACCATTCAATTCTTTTTTGCTCATTTTGCATATTTGTAAGTCTTATAGTTATAGCTTTTCTAATTTGTTGCAAGATAGGTACTATTAATTCTCAGCATTCCTTCTTTTGATTACTTTGTAAAATTAAGTTCTTCTGGTTTCAGGATGGATTGTAGCACCTGTAACTACTCCCTTAGCATTATTTCATCTTGTTCTGTTAAATGGGTTGCATTCCCTTCAAAATTTGAGTCCCGGAGAATTTCCTTTCAGAATAAATCTGAATTTTTAAAACCGAATACATGCCCTGGTCTTAGTTTGCTGGATTCTTTGCAGGTATGAATAGTTTCTTAAGTTTTCATTTTTTGCTCTTACCTACTGTGTCTTACCTTATTTTCTTTTCCAGCATTTGAATTTTTTATTTTTATTGTGATTTGCAGCATCTTAGTAACTTCGACTTCAAAGCCCTAACCAAATCTAAGATATCATCATGGAAGATTCCTTGTTCATATTCCTGTGTTATAAAATGTGACCATCCTCAAAATGCTGATTTTCCTCGCTACTATTCCAAGAAGGAGAAGAAGCCATTTCCAGTTCCCATTGTGGAATTGAGACGAGCAGCCAGGGAGAGGATGAAAAATAGTAAAGGCCAGCCGAGAATGCGAGTACCACCTCCAAAGAATGGGTTGTTAGTTAAGAGCATGATACCAATTGCCTACAAGGTATTCAATGCAAGAATTACATTGATTAACAATCTCAAGAAGCTCTTGAAGGTGATACCTGTTCATGCTTGTGGGTAATTTTCTTTTTTAGTCTCCAATTAACTCCTTAGCTAGTAATAAGAAGTATCTTGAAGTTACTTCATGGCACGTTTGAAGTTTGGCGCTTTGAAAGAATCTTCTTACCATGTTAACTGGGTCTATTAAATATGACGATGTTGTTTCCAGTTCATTTACTGGAATTTCTTTTAATCTAACAGCTGTAGTTTATTAATGCATTATACTAATCTGAAAATTAAGTGGTGGTTGAATGTTAAGTTGCAAGTAACTTCAGCATTTTTTTTATAGGTGGTTTAACTTTATGCGGTTATTTGTGATCCCAACTTAACGAAGATTGATGGGTGCTAAAGTCCCGCATTGTTTGGTTGAAAATAGACATGATACGAACCACCATTAATAGTCTACACAGACACCTATATCTTAGAAGTCAGACATCACTGCACATAAAAAAATCATATGGATGTCATCCTGAAAAATTAACGTTTGAGCTTAATCTAATTTCCACTCATACTTACCGACTCAATTAATCACCAGTATAATTTAAAAGTCGTGGTCTGTTGGATGTGAGATATCCTGCCACATTCTTCTCAAACAGATCTTCACAACTTTGTCTAAATGTGATGAAAGTTATGCAGGTTTTGCAATGAAATCCATGTGGGACCTGTTGGACATCCATTCAAGTCATGCAGAGGGAAAAATGCTAGTCTCCGGAAGGGGCTTCATGAGTGGACGAAGGCAACTCTTGAAGACATTTTTCTGCCAGTAGAAGCATACCACCTCTACGATCGCCTTGGGAGACGTATTTCTCATCAGGAAAGATACTCAATTCCACGAATTCCTGCAGTGGTCGAGCTTTGCATTCAAGCGGGTGTTGATCTTCCTGACTATCCTGCAAAGAGAAGAAGGAAACCAGTCATCCGCATCTCAAAAAGTGAATACATTGATGCTGATGAAAGTGAACTACCAGACCCTGAACCAGAAGTACCTCTAAAACCTTTGTTAACAGAAATACCAGATTCCGATGCTGTTGCCCCGAGCGACGTAGAAGACATAGCTTGGCTTGCTGACCAAACAATTCAAGCATGGGAGCAGATGAGGAGAGGAGCCAAAAGACTGATTAAGATGTATCCAGTGAGAGTATGTGGGTATTGCCCTGAGGTACATGTTGGTAGCAGTGGGCACAAGGCACAGAACTGTGGAGCTTTCAAGCACCAACAACGAAATGGGCAACATGGTTGGCAAAGGGCCGTGCTCGACGACCTGATACCACCAAGATACGTGTGGCACGTTCCAGACGTAAATGGACCACCATTGCAGAGAGAGCTAAGAAACTTTTATGGACAGGCTCCTGCTATAGTTGAAATGTGCATTCAAGCTGGGGCTGCAATCCCAGATGAGTACAAATCAACCATGCGAATGGATGTGGGGATTCCCTTGGACATTAAAGAGGCTGAAATGGTGGTTTGAGTTTTTTCCTTCTTGTTAAGTTGTTAAGCACTAAAATATTAGTGTGTACTATCAAAATGAATAGATGGCTGTATCTTCCATTTGTAATATTAACTTAAAGAAACACGAAAAAGGTGTATGGTCTGAGTTGTAGCTTGGAAGTCTCTGATAAGTGTGAAAATTAAAAAATTAGCTCAAAAATAGTTTCTATTTTTCTCACTCTTCTAACCAATTATTTAATTGAGGTATTGTGACAAAAGTACAAACTTT

Coding sequence (CDS)

ATGGATTGTAGCACCTGTAACTACTCCCTTAGCATTATTTCATCTTGTTCTGTTAAATGGGTTGCATTCCCTTCAAAATTTGAGTCCCGGAGAATTTCCTTTCAGAATAAATCTGAATTTTTAAAACCGAATACATGCCCTGGTCTTAGTTTGCTGGATTCTTTGCAGCATCTTAGTAACTTCGACTTCAAAGCCCTAACCAAATCTAAGATATCATCATGGAAGATTCCTTGTTCATATTCCTGTGTTATAAAATGTGACCATCCTCAAAATGCTGATTTTCCTCGCTACTATTCCAAGAAGGAGAAGAAGCCATTTCCAGTTCCCATTGTGGAATTGAGACGAGCAGCCAGGGAGAGGATGAAAAATAGTAAAGGCCAGCCGAGAATGCGAGTACCACCTCCAAAGAATGGGTTGTTAGTTAAGAGCATGATACCAATTGCCTACAAGGTATTCAATGCAAGAATTACATTGATTAACAATCTCAAGAAGCTCTTGAAGGTGATACCTGTTCATGCTTGTGGGTTTTGCAATGAAATCCATGTGGGACCTGTTGGACATCCATTCAAGTCATGCAGAGGGAAAAATGCTAGTCTCCGGAAGGGGCTTCATGAGTGGACGAAGGCAACTCTTGAAGACATTTTTCTGCCAGTAGAAGCATACCACCTCTACGATCGCCTTGGGAGACGTATTTCTCATCAGGAAAGATACTCAATTCCACGAATTCCTGCAGTGGTCGAGCTTTGCATTCAAGCGGGTGTTGATCTTCCTGACTATCCTGCAAAGAGAAGAAGGAAACCAGTCATCCGCATCTCAAAAAGTGAATACATTGATGCTGATGAAAGTGAACTACCAGACCCTGAACCAGAAGTACCTCTAAAACCTTTGTTAACAGAAATACCAGATTCCGATGCTGTTGCCCCGAGCGACGTAGAAGACATAGCTTGGCTTGCTGACCAAACAATTCAAGCATGGGAGCAGATGAGGAGAGGAGCCAAAAGACTGATTAAGATGTATCCAGTGAGAGTATGTGGGTATTGCCCTGAGGTACATGTTGGTAGCAGTGGGCACAAGGCACAGAACTGTGGAGCTTTCAAGCACCAACAACGAAATGGGCAACATGGTTGGCAAAGGGCCGTGCTCGACGACCTGATACCACCAAGATACGTGTGGCACGTTCCAGACGTAAATGGACCACCATTGCAGAGAGAGCTAAGAAACTTTTATGGACAGGCTCCTGCTATAGTTGAAATGTGCATTCAAGCTGGGGCTGCAATCCCAGATGAGTACAAATCAACCATGCGAATGGATGTGGGGATTCCCTTGGACATTAAAGAGGCTGAAATGGTGGTTTGA

Protein sequence

MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSNFDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGFCNEIHVGPVGHPFKSCRGKNASLRKGLHEWTKATLEDIFLPVEAYHLYDRLGRRISHQERYSIPRIPAVVELCIQAGVDLPDYPAKRRRKPVIRISKSEYIDADESELPDPEPEVPLKPLLTEIPDSDAVAPSDVEDIAWLADQTIQAWEQMRRGAKRLIKMYPVRVCGYCPEVHVGSSGHKAQNCGAFKHQQRNGQHGWQRAVLDDLIPPRYVWHVPDVNGPPLQRELRNFYGQAPAIVEMCIQAGAAIPDEYKSTMRMDVGIPLDIKEAEMVV

Homology

[Close]

BLAST of Cucsat.G11539 vs. ExPASy Swiss-Prot
Match: Q8W4A5 (APO protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO2 PE=2 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.0e-34
Identity = 82/169 (48.52%), Postives = 111/169 (65.68%), Query Frame = 0


Query: 8   YSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSNFDFKALT 67
           YS    S  S K V F     +RR       +FL PNT        SLQ  S+ +F    
Sbjct: 5   YSAISFSGFSPKSVPFAIHSVTRR-------QFLNPNTFYRFGFSPSLQG-SSIEFSLQL 64

Query: 68  KSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARERMKNSKGQ 127
            S++   K   S   V++ D PQN D P+ Y+++EKKPFPVPIV+LRRAARER+KN+K +
Sbjct: 65  NSRVVLSKERRSLPLVVRNDRPQNEDLPKQYTRREKKPFPVPIVDLRRAARERVKNNKDK 124

Query: 128 PRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 177
           P+  +PPPKNG++VKS++P+AYKV+NARI LINNL +L+KV+ V+ACG+
Sbjct: 125 PKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNACGW 165

[Close]

BLAST of Cucsat.G11539 vs. ExPASy Swiss-Prot
Match: Q9XIR4 (APO protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO1 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.7e-11
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 90  QNADFPRYYSKKEKKPFPVPIVELRRAARERMKNSKGQPRMRVPPPKNGLLVKSMIPIAY 149
           QN D P    K +KKP+P+P  +++  AR+  K ++     ++ PPKNGLLV +++P+A 
Sbjct: 72  QNVDLPPILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLDPPKNGLLVPNLVPVAD 131

Query: 150 KVFNARITLINNLKKLLKVIPVHACGYAG 179
           +V +    LI  L +LL V+PV AC   G
Sbjct: 132 QVIDNWKLLIKGLAQLLHVVPVFACSECG 160

[Close]

BLAST of Cucsat.G11539 vs. ExPASy Swiss-Prot
Match: Q9FH50 (APO protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO3 PE=2 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 5.7e-09
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 87  DHPQNADFPR-YYSKKEKKPFPVPIVELRRAARERMKNSKGQP-RMRVPPPKNGLLVKSM 146
           + P  AD P+    K E+KP+P P+ EL R A+E  +  K QP R+   PP NGLLV  +
Sbjct: 39  EDPLYADVPKPPKDKSERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPEL 98

Query: 147 IPIAYKVFNARITLINNLKKLLKVIPVHAC 175
           + +A+ V   R  L++ L K++  +PVH C
Sbjct: 99  VDVAHCVHRCRNMLLSGLSKIIHHVPVHRC 128

[Close]

BLAST of Cucsat.G11539 vs. NCBI nr
Match: XP_004146678.1 (APO protein 2, chloroplastic isoform X1 [Cucumis sativus] >KGN65165.1 hypothetical protein Csa_019960 [Cucumis sativus])

HSP 1 Score: 358 bits (919), Expect = 5.95e-120
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN
Sbjct: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACG+
Sbjct: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. NCBI nr
Match: XP_008443853.1 (PREDICTED: APO protein 2, chloroplastic [Cucumis melo] >KAA0035092.1 APO protein 2 [Cucumis melo var. makuwa] >TYJ95986.1 APO protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 341 bits (874), Expect = 3.88e-113
Identity = 166/176 (94.32%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCS+CNYSLS ISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTC GLSLLDSLQHLSN
Sbjct: 1   MDCSSCNYSLSTISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCLGLSLLDSLQHLSN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           F+FKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FNFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MKNSKGQPR  VPPPKNGLLVKSMIPIAY VFNARITL+NNLKKLLKV+PVHACG+
Sbjct: 121 MKNSKGQPRRPVPPPKNGLLVKSMIPIAYNVFNARITLLNNLKKLLKVVPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. NCBI nr
Match: XP_038880638.1 (APO protein 2, chloroplastic [Benincasa hispida])

HSP 1 Score: 315 bits (807), Expect = 5.28e-103
Identity = 152/176 (86.36%), Postives = 161/176 (91.48%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCSTCNYSLS ISSCSVK   FPSK  SRRISFQ + EF KP+TCPGLSLLDSLQH+SN
Sbjct: 1   MDCSTCNYSLSTISSCSVKRFTFPSKLASRRISFQKRYEFFKPSTCPGLSLLDSLQHISN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKAL+K KI+SWKIPCSYSCV++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKALSKCKIASWKIPCSYSCVVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MK SKGQPR  VPPPKNGLLVKSMIPIAY VFNARITLINNLKKLL V+PVHACG+
Sbjct: 121 MKKSKGQPRRPVPPPKNGLLVKSMIPIAYNVFNARITLINNLKKLLNVVPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. NCBI nr
Match: XP_011655586.1 (APO protein 2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 309 bits (791), Expect = 7.10e-101
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN
Sbjct: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYK 150
           MKNSKGQPRMRVPPPKNGLLVKSMIPIAYK
Sbjct: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYK 150

[Close]

BLAST of Cucsat.G11539 vs. NCBI nr
Match: XP_023516533.1 (APO protein 2, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 309 bits (791), Expect = 1.38e-100
Identity = 149/176 (84.66%), Postives = 159/176 (90.34%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCS+CNYS S ISSCSVKW+ FPSK ESRRI FQ KSEF+KP   PGLSLLDSLQH+SN
Sbjct: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFVKPCVGPGLSLLDSLQHISN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKA +KS ISSWKIPCSYSC ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKAGSKSMISSWKIPCSYSCAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MK S+GQPR  VPPPKNGL VKSMIPIAY VFNARITLINNLKKLLKV+PVHACG+
Sbjct: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. ExPASy TrEMBL
Match: A0A0A0LTB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256740 PE=4 SV=1)

HSP 1 Score: 358 bits (919), Expect = 2.88e-120
Identity = 175/176 (99.43%), Postives = 176/176 (100.00%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN
Sbjct: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACG+
Sbjct: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. ExPASy TrEMBL
Match: A0A5A7SV25 (APO protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00560 PE=4 SV=1)

HSP 1 Score: 341 bits (874), Expect = 1.88e-113
Identity = 166/176 (94.32%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCS+CNYSLS ISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTC GLSLLDSLQHLSN
Sbjct: 1   MDCSSCNYSLSTISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCLGLSLLDSLQHLSN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           F+FKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FNFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MKNSKGQPR  VPPPKNGLLVKSMIPIAY VFNARITL+NNLKKLLKV+PVHACG+
Sbjct: 121 MKNSKGQPRRPVPPPKNGLLVKSMIPIAYNVFNARITLLNNLKKLLKVVPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. ExPASy TrEMBL
Match: A0A1S3B8J0 (APO protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487348 PE=4 SV=1)

HSP 1 Score: 341 bits (874), Expect = 1.88e-113
Identity = 166/176 (94.32%), Postives = 171/176 (97.16%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCS+CNYSLS ISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTC GLSLLDSLQHLSN
Sbjct: 1   MDCSSCNYSLSTISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCLGLSLLDSLQHLSN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           F+FKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FNFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MKNSKGQPR  VPPPKNGLLVKSMIPIAY VFNARITL+NNLKKLLKV+PVHACG+
Sbjct: 121 MKNSKGQPRRPVPPPKNGLLVKSMIPIAYNVFNARITLLNNLKKLLKVVPVHACGF 176

[Close]

BLAST of Cucsat.G11539 vs. ExPASy TrEMBL
Match: A0A6J1JHK9 (APO protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485776 PE=4 SV=1)

HSP 1 Score: 305 bits (780), Expect = 3.16e-99
Identity = 149/177 (84.18%), Postives = 159/177 (89.83%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTC-PGLSLLDSLQHLS 60
           MDCS+CNYS S ISSCSVKW+ FPSK ESRRI FQ KSEFLKP+   PGLSLLDSLQH+S
Sbjct: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRIFFQKKSEFLKPSVVGPGLSLLDSLQHIS 60

Query: 61  NFDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARE 120
           NFD KA +KS ISSWKIPCSYSC ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARE
Sbjct: 61  NFDSKAGSKSMISSWKIPCSYSCAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARE 120

Query: 121 RMKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           RMK S+GQPR  VPPPKNGL VKSMIPIAY VFNARITLINNLKKLLKV+PVHACG+
Sbjct: 121 RMKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGF 177

[Close]

BLAST of Cucsat.G11539 vs. ExPASy TrEMBL
Match: A0A6J1E6N3 (APO protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111429895 PE=4 SV=1)

HSP 1 Score: 304 bits (779), Expect = 4.34e-99
Identity = 148/176 (84.09%), Postives = 158/176 (89.77%), Query Frame = 0


Query: 1   MDCSTCNYSLSIISSCSVKWVAFPSKFESRRISFQNKSEFLKPNTCPGLSLLDSLQHLSN 60
           MDCS+CNYS S ISSCSVKW+ FPSK ESRRISFQ KSEF+KP   PGLSLL SLQH+SN
Sbjct: 1   MDCSSCNYSFSTISSCSVKWIEFPSKLESRRISFQKKSEFVKPCVGPGLSLLGSLQHISN 60

Query: 61  FDFKALTKSKISSWKIPCSYSCVIKCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120
           FDFKA +KS ISSWKIPCSYS  ++CDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER
Sbjct: 61  FDFKAGSKSMISSWKIPCSYSFAVRCDHPQNADFPRYYSKKEKKPFPVPIVELRRAARER 120

Query: 121 MKNSKGQPRMRVPPPKNGLLVKSMIPIAYKVFNARITLINNLKKLLKVIPVHACGY 176
           MK S+GQPR  VPPPKNGL VKSMIPIAY VFNARITLINNLKKLLKV+PVHACG+
Sbjct: 121 MKKSQGQPRKPVPPPKNGLTVKSMIPIAYNVFNARITLINNLKKLLKVVPVHACGF 176

The following BLAST results are available for this feature:

BLAST of Cucsat.G11539 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W4A5	1.0e-34	48.52	APO protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO2 PE=2 SV=1	[more]
Q9XIR4	4.7e-11	39.33	APO protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=APO1 PE=2 SV=1	[more]
Q9FH50	5.7e-09	40.00	APO protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=APO3 PE=2 SV=1	[more]

BLAST of Cucsat.G11539 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146678.1	5.95e-120	99.43	APO protein 2, chloroplastic isoform X1 [Cucumis sativus] >KGN65165.1 hypothetic...	[more]
XP_008443853.1	3.88e-113	94.32	PREDICTED: APO protein 2, chloroplastic [Cucumis melo] >KAA0035092.1 APO protein...	[more]
XP_038880638.1	5.28e-103	86.36	APO protein 2, chloroplastic [Benincasa hispida]	[more]
XP_011655586.1	7.10e-101	100.00	APO protein 2, chloroplastic isoform X2 [Cucumis sativus]	[more]
XP_023516533.1	1.38e-100	84.66	APO protein 2, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G11539 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTB5	2.88e-120	99.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G256740 PE=4 SV=1	[more]
A0A5A7SV25	1.88e-113	94.32	APO protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00560 ...	[more]
A0A1S3B8J0	1.88e-113	94.32	APO protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487348 PE=4 SV=1	[more]
A0A6J1JHK9	3.16e-99	84.18	APO protein 2, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111485776 PE=4 SV...	[more]
A0A6J1E6N3	4.34e-99	84.09	APO protein 2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111429895 PE=4 ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023342	APO domain	PFAM	PF05634	APO_RNA-bind	coord: 2..158 e-value: 1.6E-75 score: 252.9 coord: 191..315 e-value: 8.3E-28 score: 97.1
IPR023342	APO domain	PROSITE	PS51499	APO	coord: 223..308 score: 31.996925
IPR023342	APO domain	PROSITE	PS51499	APO	coord: 53..138 score: 29.477295
None	No IPR available	PANTHER	PTHR10388:SF15	APO PROTEIN 2, CHLOROPLASTIC	coord: 1..331
None	No IPR available	PANTHER	PTHR10388	EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1	coord: 1..331

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11539.T2	Cucsat.G11539.T2	mRNA
Cucsat.G11539.T10	Cucsat.G11539.T10	mRNA
Cucsat.G11539.T11	Cucsat.G11539.T11	mRNA
Cucsat.G11539.T1	Cucsat.G11539.T1	mRNA
Cucsat.G11539.T7	Cucsat.G11539.T7	mRNA
Cucsat.G11539.T9	Cucsat.G11539.T9	mRNA
Cucsat.G11539.T8	Cucsat.G11539.T8	mRNA
Cucsat.G11539.T5	Cucsat.G11539.T5	mRNA
Cucsat.G11539.T6	Cucsat.G11539.T6	mRNA
Cucsat.G11539.T3	Cucsat.G11539.T3	mRNA
Cucsat.G11539.T12	Cucsat.G11539.T12	mRNA
Cucsat.G11539.T14	Cucsat.G11539.T14	mRNA
Cucsat.G11539.T13	Cucsat.G11539.T13	mRNA
Cucsat.G11539.T4	Cucsat.G11539.T4	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding