Cucsat.G11516 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11516
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Unknown protein
Location	ctg1808: 227032 .. 227631 (+)
RNA-Seq Expression	Cucsat.G11516
Synteny	Cucsat.G11516

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAAAACCAACTCAATTCATGTAAAATCAAAGAAATATGGAAAGGAGGGCCTTGGGTTTCTTTAGCAGAAGTTGGCAAAGAAGGTGTTGAGGGTCTAATTGTAAATCAAGTAAATGGGATCCAATTCATCGCCAAGTCAGAAAAGGGGAGAATAGTTGATGATAGATTTTCAGCCGAGTGTTATTTCGATTTAAACCCCAAATTTGACTTGCCATGGCAATACAGTACCCTCGTGGAAAAGCAAAACCTGATTGCACAGCAAACGCACCAAGGAAACCAACTCAATTCATGTAAAATCAAAGAAATATGGAAAGGAGGGCCTTGGGCTTCTTTAGCAGAAGTTGGCAAAGAAGGTGCTGAGGGTCTAATTGTAAATCAAGCAAATGGGATCCAATTCATCGCCAAGTCAGAAAAGGGGAGAAAAGTTGATGATAGATTTTCAGCCGAGTGTTATTTCGATTTAAACCCAAAATCTGACTTGCCATGGCAATACAGTACCCTCGTGGAAAAGCAAAACCTGATTGCACAGCAAACGCACCAAGAAAGAGAAGCCAAAGAGAAAGAAGACAGTCTAGTAGAAGAGCATGGGTACGGCGAAG

Coding sequence (CDS)

GAAAACCAACTCAATTCATGTAAAATCAAAGAAATATGGAAAGGAGGGCCTTGGGTTTCTTTAGCAGAAGTTGGCAAAGAAGGTGCTGAGGGTCTAATTGTAAATCAAGCAAATGGGATCCAATTCATCGCCAAGTCAGAAAAGGGGAGAAAAGTTGATGATAGATTTTCAGCCGAGTGTTATTTCGATTTAAACCCAAAATCTGACTTGCCATGGCAATACAGTACCCTCGTGGAAAAGCAAAACCTGATTGCACAGCAAACGCACCAAGAAAGAGAAGCCAAAGAGAAAGAAGACAGTCTAGTAGAAGAGCATGGGTACGGCGAA

Protein sequence

ENQLNSCKIKEIWKGGPWVSLAEVGKEGAEGLIVNQANGIQFIAKSEKGRKVDDRFSAECYFDLNPKSDLPWQYSTLVEKQNLIAQQTHQEREAKEKEDSLVEEHGYGE

Homology

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BLAST of Cucsat.G11516 vs. NCBI nr
Match: KAE8653046.1 (hypothetical protein Csa_020077 [Cucumis sativus])

HSP 1 Score: 218 bits (555), Expect = 2.53e-69
Identity = 107/108 (99.07%), Postives = 107/108 (99.07%), Query Frame = 0


Query: 2   NQLNSCKIKEIWKGGPWVSLAEVGKEGAEGLIVNQANGIQFIAKSEKGRKVDDRFSAECY 61
           NQLNSCKIKEIWKGGPW SLAEVGKEGAEGLIVNQANGIQFIAKSEKGRKVDDRFSAECY
Sbjct: 141 NQLNSCKIKEIWKGGPWASLAEVGKEGAEGLIVNQANGIQFIAKSEKGRKVDDRFSAECY 200

Query: 62  FDLNPKSDLPWQYSTLVEKQNLIAQQTHQEREAKEKEDSLVEEHGYGE 109
           FDLNPKSDLPWQYSTLVEKQNLIAQQTHQEREAKEKEDSLVEEHGYGE
Sbjct: 201 FDLNPKSDLPWQYSTLVEKQNLIAQQTHQEREAKEKEDSLVEEHGYGE 248

The following BLAST results are available for this feature:

BLAST of Cucsat.G11516 vs.


Match Name	E-value	Identity	Description

BLAST of Cucsat.G11516 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8653046.1	2.53e-69	99.07	hypothetical protein Csa_020077 [Cucumis sativus]	[more]

BLAST of Cucsat.G11516 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11516.T1	Cucsat.G11516.T1	mRNA