Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ACCAGCTACTTTATGCGGCTTAAGAAGATCATTGTCGAGCTTGGCTTGTTGTTACCTTTTAGTCCTGATGTTAAAGTTCAACAAGTTCAACGAGAGAAGATGGCTGTTATGATTTTTCTGAATGGACTCTTACCTGAATTTGGAATGGCAAAGACACAGATTCTCTCTGACTCCAAGATTCCATCATTAGATGATGCCTTCACTCGAGTCCTTCGCATTGAAAGCTCTCCGACTAGTGTGTCTATTCCTCAACCCAGTAGTGCTCTCTTTAGCAAGAACAATAACCCTCGGGCACCTCAGAGGAATAGTACTGATCATCGAAAACCAGAGTCTGTAGAGATTGTTTGTAACTACTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGGAAATTGCTATATAAGAATAGTCAACGATCTCAACATGCTCAGATAGCCTCCACATGCGATATACCAGAGGCGTCAGTTACTATTTCTGCAGATGAGTTTGCTAAGTTTCAGAATTACCAAGAGTCATTACAAGCGTCATCTTCCTCTACTCCGATTGCATCCACTGTTGCCCCAGGTAATATAAAGTGTCTTCTTACATCATCTACCAAATGGGTCATAGACTCTGGTGCCACAGCTCATATGACAGGTAATTCTCACCTATTTTCTAGACCGTTGTCCCCTGCCCCTTTCCCATCTGTTACATTGGCCGATGGCTCCACATCTTCTGTTCTTGGCTCTGGCACTATTCACCTTACCCCATCCTTTTCTCTCTCTTCTGTGTTACATTTGCCTAACTTATCCTTTAATTTAATTTCTACTAGTCAACTTACTCATGACCTAAATTGTGTTGTCATGTTCTTTTCTGGTTATTGCTTGTTTCAGGATCGTGTGACGAAGAAGATTA
Coding sequence (CDS)
ACCAGCTACTTTATGCGGCTTAAGAAGATCATTGTCGAGCTTGGCTTGTTGTTACCTTTTAGTCCTGATGTTAAAGTTCAACAAGTTCAACGAGAGAAGATGGCTGTTATGATTTTTCTGAATGGACTCTTACCTGAATTTGGAATGGCAAAGACACAGATTCTCTCTGACTCCAAGATTCCATCATTAGATGATGCCTTCACTCGAGTCCTTCGCATTGAAAGCTCTCCGACTAGTGTGTCTATTCCTCAACCCAGTAGTGCTCTCTTTAGCAAGAACAATAACCCTCGGGCACCTCAGAGGAATAGTACTGATCATCGAAAACCAGAGTCTGTAGAGATTGTTTGTAACTACTGTCGTAAGCCAGGCCATATGAAACGTGATTGTCGGAAATTGCTATATAAGAATAGTCAACGATCTCAACATGCTCAGATAGCCTCCACATGCGATATACCAGAGGCGTCAGTTACTATTTCTGCAGATGAGTTTGCTAAGTTTCAGAATTACCAAGAGTCATTACAAGCGTCATCTTCCTCTACTCCGATTGCATCCACTGTTGCCCCAGGATCGTGTGACGAAGAAGAT
Protein sequence
TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGSCDEED
Homology
BLAST of Cucsat.G11514 vs. NCBI nr
Match:
XP_031744753.1 (uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus])
HSP 1 Score: 362 bits (928), Expect = 2.97e-113
Identity = 188/189 (99.47%), Postives = 188/189 (99.47%), Query Frame = 0
Query: 1 TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 60
TSYFMRLKKII ELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI
Sbjct: 130 TSYFMRLKKIIAELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 189
Query: 61 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCR 120
PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCR
Sbjct: 190 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCR 249
Query: 121 KPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSST 180
KPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSST
Sbjct: 250 KPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSST 309
Query: 181 PIASTVAPG 189
PIASTVAPG
Sbjct: 310 PIASTVAPG 318
BLAST of Cucsat.G11514 vs. NCBI nr
Match:
XP_031738595.1 (uncharacterized protein LOC116402733 isoform X2 [Cucumis sativus])
HSP 1 Score: 313 bits (803), Expect = 5.96e-107
Identity = 161/162 (99.38%), Postives = 161/162 (99.38%), Query Frame = 0
Query: 34 MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 93
M VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN
Sbjct: 1 MVVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 60
Query: 94 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 153
NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE
Sbjct: 61 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 120
Query: 154 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGSCDEED 195
ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGSCDEED
Sbjct: 121 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPGSCDEED 162
BLAST of Cucsat.G11514 vs. NCBI nr
Match:
XP_031738594.1 (uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus])
HSP 1 Score: 301 bits (771), Expect = 1.03e-101
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0
Query: 34 MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 93
M VMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN
Sbjct: 1 MVVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 60
Query: 94 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 153
NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE
Sbjct: 61 NNPRAPQRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPE 120
Query: 154 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPG 189
ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPG
Sbjct: 121 ASVTISADEFAKFQNYQESLQASSSSTPIASTVAPG 156
BLAST of Cucsat.G11514 vs. NCBI nr
Match:
KAA0033068.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 308 bits (788), Expect = 1.70e-100
Identity = 163/196 (83.16%), Postives = 169/196 (86.22%), Query Frame = 0
Query: 1 TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 60
T+YFMRLKKI L LLLPFSPDVKVQQ QREKM V IFLNGLLPEFGM K QILSDSKI
Sbjct: 63 TNYFMRLKKITAALALLLPFSPDVKVQQAQREKMVVTIFLNGLLPEFGMTKAQILSDSKI 122
Query: 61 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAP-------QRNSTDHRKPESVE 120
PSLDDAFTRVLRIESSP VSIPQ SSAL SKNNNPRAP QR S DHRKP S +
Sbjct: 123 PSLDDAFTRVLRIESSPNGVSIPQSSSALISKNNNPRAPRAMDGNVQRKSYDHRKPYSTK 182
Query: 121 IVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESL 180
IVCNYC KPGH+KRDCRKLLYKNSQ+SQHAQIASTCDIPEASVTISADE+ KFQNYQ+ L
Sbjct: 183 IVCNYCHKPGHIKRDCRKLLYKNSQQSQHAQIASTCDIPEASVTISADEYTKFQNYQDPL 242
Query: 181 QASSSSTPIASTVAPG 189
QASSSSTPIASTVAPG
Sbjct: 243 QASSSSTPIASTVAPG 258
BLAST of Cucsat.G11514 vs. NCBI nr
Match:
KAA0035572.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30964.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 243 bits (621), Expect = 5.24e-76
Identity = 131/163 (80.37%), Postives = 137/163 (84.05%), Query Frame = 0
Query: 34 MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 93
M VMIFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVLRIESS VSIPQ SSA SKN
Sbjct: 1 MTVMIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKN 60
Query: 94 NNPRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIA 153
NNPRAP QR S DHRKP+S EIVCN K GH+KRDCRKLLYKNSQ+SQHAQIA
Sbjct: 61 NNPRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYKNSQQSQHAQIA 120
Query: 154 STCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPG 189
STCDIPE VTIS DE+AKFQNYQ+SLQA SSSTP+ASTVAPG
Sbjct: 121 STCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPG 163
BLAST of Cucsat.G11514 vs. ExPASy TrEMBL
Match:
A0A5A7SR90 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00970 PE=4 SV=1)
HSP 1 Score: 308 bits (788), Expect = 8.22e-101
Identity = 163/196 (83.16%), Postives = 169/196 (86.22%), Query Frame = 0
Query: 1 TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 60
T+YFMRLKKI L LLLPFSPDVKVQQ QREKM V IFLNGLLPEFGM K QILSDSKI
Sbjct: 63 TNYFMRLKKITAALALLLPFSPDVKVQQAQREKMVVTIFLNGLLPEFGMTKAQILSDSKI 122
Query: 61 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAP-------QRNSTDHRKPESVE 120
PSLDDAFTRVLRIESSP VSIPQ SSAL SKNNNPRAP QR S DHRKP S +
Sbjct: 123 PSLDDAFTRVLRIESSPNGVSIPQSSSALISKNNNPRAPRAMDGNVQRKSYDHRKPYSTK 182
Query: 121 IVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESL 180
IVCNYC KPGH+KRDCRKLLYKNSQ+SQHAQIASTCDIPEASVTISADE+ KFQNYQ+ L
Sbjct: 183 IVCNYCHKPGHIKRDCRKLLYKNSQQSQHAQIASTCDIPEASVTISADEYTKFQNYQDPL 242
Query: 181 QASSSSTPIASTVAPG 189
QASSSSTPIASTVAPG
Sbjct: 243 QASSSSTPIASTVAPG 258
BLAST of Cucsat.G11514 vs. ExPASy TrEMBL
Match:
A0A5D3E4V8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001910 PE=4 SV=1)
HSP 1 Score: 243 bits (621), Expect = 2.54e-76
Identity = 131/163 (80.37%), Postives = 137/163 (84.05%), Query Frame = 0
Query: 34 MAVMIFLNGLLPEFGMAKTQILSDSKIPSLDDAFTRVLRIESSPTSVSIPQPSSALFSKN 93
M VMIFLNGLLPEFGMAK QILSDSKIPSLDDAFTRVLRIESS VSIPQ SSA SKN
Sbjct: 1 MTVMIFLNGLLPEFGMAKVQILSDSKIPSLDDAFTRVLRIESSLNGVSIPQSSSAFISKN 60
Query: 94 NNPRAP-------QRNSTDHRKPESVEIVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIA 153
NNPRAP QR S DHRKP+S EIVCN K GH+KRDCRKLLYKNSQ+SQHAQIA
Sbjct: 61 NNPRAPRAMDGNVQRKSYDHRKPDSTEIVCNCYPKKGHIKRDCRKLLYKNSQQSQHAQIA 120
Query: 154 STCDIPEASVTISADEFAKFQNYQESLQASSSSTPIASTVAPG 189
STCDIPE VTIS DE+AKFQNYQ+SLQA SSSTP+ASTVAPG
Sbjct: 121 STCDIPEVLVTISVDEYAKFQNYQDSLQALSSSTPVASTVAPG 163
BLAST of Cucsat.G11514 vs. ExPASy TrEMBL
Match:
A0A5D3E5M8 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00270 PE=4 SV=1)
HSP 1 Score: 242 bits (617), Expect = 8.02e-72
Identity = 135/196 (68.88%), Postives = 145/196 (73.98%), Query Frame = 0
Query: 1 TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 60
T+YFMRLKKI EL LLLPFSPDVK QILSDSKI
Sbjct: 60 TNYFMRLKKITAELALLLPFSPDVK--------------------------AQILSDSKI 119
Query: 61 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVE 120
PSLD+AFTRVLR ESSP VSIPQ S++L SKNNNPRAP+ S DHRKP+S E
Sbjct: 120 PSLDNAFTRVLRFESSPNGVSIPQSSTSLISKNNNPRAPRAMDGNVHTKSYDHRKPDSTE 179
Query: 121 IVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESL 180
IVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIASTCDIPEAS+TISA+E AK QNYQ+SL
Sbjct: 180 IVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEASITISANECAKLQNYQDSL 229
Query: 181 QASSSSTPIASTVAPG 189
QASSSSTPIASTV PG
Sbjct: 240 QASSSSTPIASTVVPG 229
BLAST of Cucsat.G11514 vs. ExPASy TrEMBL
Match:
A0A5A7T406 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 PE=4 SV=1)
HSP 1 Score: 239 bits (609), Expect = 1.82e-71
Identity = 134/196 (68.37%), Postives = 144/196 (73.47%), Query Frame = 0
Query: 1 TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 60
T+YFMRLKKI EL LLLPFSPDVK QILSDSKI
Sbjct: 60 TNYFMRLKKITAELALLLPFSPDVK--------------------------AQILSDSKI 119
Query: 61 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQR-------NSTDHRKPESVE 120
PSLD+AFTRVL ESSP VSIPQ S++L SKNNNPRAP+ S DHRKP+S E
Sbjct: 120 PSLDNAFTRVLCFESSPNGVSIPQSSTSLISKNNNPRAPRAMDGNVHTKSYDHRKPDSTE 179
Query: 121 IVCNYCRKPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESL 180
IVCNYCRKP H KRDCRKLLYKNSQ+SQHAQIASTCDIPEAS+TISA+E AK QNYQ+SL
Sbjct: 180 IVCNYCRKPSHRKRDCRKLLYKNSQQSQHAQIASTCDIPEASITISANECAKLQNYQDSL 229
Query: 181 QASSSSTPIASTVAPG 189
QASSSSTPIASTV PG
Sbjct: 240 QASSSSTPIASTVVPG 229
BLAST of Cucsat.G11514 vs. ExPASy TrEMBL
Match:
A0A5D3D1J3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1032G00260 PE=4 SV=1)
HSP 1 Score: 223 bits (567), Expect = 3.39e-70
Identity = 129/189 (68.25%), Postives = 145/189 (76.72%), Query Frame = 0
Query: 1 TSYFMRLKKIIVELGLLLPFSPDVKVQQVQREKMAVMIFLNGLLPEFGMAKTQILSDSKI 60
T+YFMRLKKI EL LLLPF+PDVKVQQ QREKMAVMI LNGLLPEFGM KTQILS+SKI
Sbjct: 49 TNYFMRLKKITAELALLLPFNPDVKVQQAQREKMAVMIILNGLLPEFGMTKTQILSNSKI 108
Query: 61 PSLDDAFTRVLRIESSPTSVSIPQPSSALFSKNNNPRAPQRNSTDHRKPESVEIVCNYCR 120
PSLDDAFTRVLRIESSP VSIPQ +S L SKNNNPRAP+
Sbjct: 109 PSLDDAFTRVLRIESSPNGVSIPQSNSTLISKNNNPRAPRAMD----------------- 168
Query: 121 KPGHMKRDCRKLLYKNSQRSQHAQIASTCDIPEASVTISADEFAKFQNYQESLQASSSST 180
G+++ RK++ ++Q Q IASTCDIPEAS+TISADE+AKFQNYQ+SLQA SSST
Sbjct: 169 --GNVQ---RKII--DNQILQRLFIASTCDIPEASITISADEYAKFQNYQDSLQALSSST 213
Query: 181 PIASTVAPG 189
P+ASTVAPG
Sbjct: 229 PVASTVAPG 213
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
XP_031744753.1 | 2.97e-113 | 99.47 | uncharacterized protein LOC101212255 isoform X1 [Cucumis sativus] | [more] |
XP_031738595.1 | 5.96e-107 | 99.38 | uncharacterized protein LOC116402733 isoform X2 [Cucumis sativus] | [more] |
XP_031738594.1 | 1.03e-101 | 99.36 | uncharacterized protein LOC116402733 isoform X1 [Cucumis sativus] | [more] |
KAA0033068.1 | 1.70e-100 | 83.16 | gag-pol polyprotein [Cucumis melo var. makuwa] >TYK03482.1 gag-pol polyprotein [... | [more] |
KAA0035572.1 | 5.24e-76 | 80.37 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK30964.1 putative m... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7SR90 | 8.22e-101 | 83.16 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G... | [more] |
A0A5D3E4V8 | 2.54e-76 | 80.37 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
A0A5D3E5M8 | 8.02e-72 | 68.88 | Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G0027... | [more] |
A0A5A7T406 | 1.82e-71 | 68.37 | Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold270G00610 ... | [more] |
A0A5D3D1J3 | 3.39e-70 | 68.25 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |