Cucsat.G11484 (gene) Cucumber (B10) v3

Overview
NameCucsat.G11484
Typegene
OrganismCucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
DescriptionRetrotran_gag_3 domain-containing protein
Locationctg1808: 151473 .. 153150 (+)
RNA-Seq ExpressionCucsat.G11484
SyntenyCucsat.G11484
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGATGACAAGAGAAAAGCACACTAGCAAAGTTGGAGGAAGATATATATGTGTTAGCAAAGATCTTAGTGGCATGAGTTTTCATGACATGGAAATCTTCAATCAATTGATGCTTACTATGCATAGCCGGAGAATCTTAAAGAATCGTAGAAGCCTTCTTTCAAGACTGCTCAAAGGATATTAGAACTTGAAGACTATTAATATACTGTTAGTAAGTTAGAGAAACTAAAAACATTTGTTTTTCTCTTTACTGTTATCCTTGATAACTGATTGTACATACACCTATAAATCTCCTCATTGTTCTTCCATTCTTTGTTAATATGGTATCAGAGGTTCCTCTTCCTCCAAAAGTTTCTCTCAATCTTCTGATAAGACTCACGATTCATCACCGTCGGAATGACAACTCCAACAGTCAATACTTCACAGAACCTACCGGAAACTCAAGAAAATCACAATTCCAGTCAGTCTGATACCTCTGCCCAAACTTCTTTCAATCAGAATCAAGGATATCTAAATCCTTACTTTCTTCATCACAATGATAATACAAGTTTGGTGCTGGTTACAAAACAATTGACAGAAGAAAATTATATCTCTTGGAGCCGAGCAATGACCATTGGTCTCTCAGTGAAGAACAAGATTGGATTTGTTGACGAAACTATTGCCAAGCCAACCGGTGATCTTCTTCCAGCTTGGATCAAAAATAATAACATCGTTATCTCTTGAATACTGAATTCAGTGTCCAAACCCATACCAGCAAGCATCTTATTTTCAGACTCAGCAAGAGCAATATGGATTGACCTTAAAGAAAGATTTCAAAAGAAGAACGCGCCAAGAATTTTTCATTGAAAACGATCCCTTGCAACCTTTGAGCAAAACCAAGATACCATTGGTATGTATTATACTAAATTCAAAAATCTTATTGATGAGTTGTATACATATAGACCAGGTTGCACTTGCAGTTATGATGGTGTACGAGAAATGACGGATTTCCTTCAAATGGAATATCTCATGGACTTTCTTATGGGATTAAATGAGAACTTCTCTCAAGCACGGGGTCAACTTCTTCTCATGGATCCTCTACCATCAACTAGTCGAGCCTTTTCTCTTCTTCTCCAAGAAGAACAACAAAGGTCAATTGGATCTCTTTCTTCTACAGCACCAACAATGGCCTTTGTGGTATCCTCTAACTCATCCAAAAATGGAACCAACAATCGACAAAGGAGAGAAAAACCCATGTGCACCCACTGCAACACTCCTGGACACAGTAGATAAATGTTATAAGCTTCATGGATATCCTCTTGGATACAAGACCAAACAACAGCAACAACGAAACAGTAACGTTGTTAATTCAGTAGCTACTCGAAACAGTGAGAATATCTCTCAAGACACCACACAGAACAGTCAAATGGTGAATAATATCAGCACTGCAGAGGCATTAATCCAATGTCAAAACCTTCTCAACCAGCTTCAGTCCCAAATCAATGCCTCCAACCAAATAGCTACCTCACATATAGCAGGTACTTCTTATTCATTCCCTTTATGGATAATTGATTCTGGAGCATCCACCCATATTTCTTGTTGCAAGTCCTATTTTACATCCACTCAACCATGCTCAACAACCATTAGTTTACCAAATAAACAAGTTTTTGAAGTTAAAAGTGCTGGCACCATCAAATTAT

Coding sequence (CDS)

ATGACAACTCCAACAGTCAATACTTCACAGAACCTACCGGAAACTCAAGAAAATCACAATTCCAGTCAGTCTGATACCTCTGCCCAAACTTCTTTCAATCAGAATCAAGGATATCTAAATCCTTACTTTCTTCATCACAATGATAATACAAGTTTGGTGCTGGTTACAAAACAATTGACAGAAGAAAATTATATCTCTTGGAGCCGAGCAATGACCATTGGTCTCTCAGTGAAGAACAAGATTGGATTTGTTGACGAAACTATTGCCAAGCCAACCGGTGATCTTCTTCCAGCTTGGATCAAAAATAATAACATCGTTATCTCTTGA

Protein sequence

MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS
Homology
BLAST of Cucsat.G11484 vs. NCBI nr
Match: XP_031736906.1 (uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 4.36e-55
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLT 60
           MTTPT+N S   P+ QEN NS+QSDTSAQTSF+QNQGYLNPYFLHHNDNT+LVLVT+QLT
Sbjct: 1   MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLT 60

Query: 61  EENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS 108
           EENY+SWSRAMTIGLSVKNKIGFVD TIA+PTGDLLP WI+NNNIVIS
Sbjct: 61  EENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVIS 108

BLAST of Cucsat.G11484 vs. NCBI nr
Match: XP_031736905.1 (uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 4.48e-55
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLT 60
           MTTPT+N S   P+ QEN NS+QSDTSAQTSF+QNQGYLNPYFLHHNDNT+LVLVT+QLT
Sbjct: 41  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLT 100

Query: 61  EENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS 108
           EENY+SWSRAMTIGLSVKNKIGFVD TIA+PTGDLLP WI+NNNIVIS
Sbjct: 101 EENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVIS 148

BLAST of Cucsat.G11484 vs. NCBI nr
Match: XP_031736904.1 (uncharacterized protein LOC105434586 isoform X1 [Cucumis sativus])

HSP 1 Score: 184 bits (467), Expect = 1.22e-54
Identity = 91/108 (84.26%), Postives = 100/108 (92.59%), Query Frame = 0

Query: 1   MTTPTVNTSQNLPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLT 60
           MTTPT+N S   P+ QEN NS+QSDTSAQTSF+QNQGYLNPYFLHHNDNT+LVLVT+QLT
Sbjct: 41  MTTPTINVSHTSPKNQENPNSNQSDTSAQTSFDQNQGYLNPYFLHHNDNTNLVLVTEQLT 100

Query: 61  EENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS 108
           EENY+SWSRAMTIGLSVKNKIGFVD TIA+PTGDLLP WI+NNNIVIS
Sbjct: 101 EENYVSWSRAMTIGLSVKNKIGFVDGTIARPTGDLLPVWIRNNNIVIS 148

BLAST of Cucsat.G11484 vs. NCBI nr
Match: XP_011650144.1 (uncharacterized protein LOC105434731 [Cucumis sativus])

HSP 1 Score: 114 bits (285), Expect = 2.93e-30
Identity = 49/74 (66.22%), Postives = 63/74 (85.14%), Query Frame = 0

Query: 35  NQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGD 94
           NQGY NP+ +HHNDN+SL+LVT+ LTEENY+SWSR M IGL +KNK+GF D ++++P  D
Sbjct: 37  NQGYFNPFCIHHNDNSSLILVTEPLTEENYVSWSRGMIIGLFIKNKLGFSDGSLSRPNDD 96

Query: 95  LLPAWIKNNNIVIS 108
            LP+WI+NNNIVIS
Sbjct: 97  SLPSWIRNNNIVIS 110

BLAST of Cucsat.G11484 vs. NCBI nr
Match: XP_022154608.1 (uncharacterized protein LOC111021831 [Momordica charantia])

HSP 1 Score: 110 bits (274), Expect = 1.06e-26
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 39  LNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPA 98
           LNPY+LHH DNT LVLVT+ LTEENY SWSR+M I LS+KNK+GF+D +I++P G+LLPA
Sbjct: 39  LNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPA 98

Query: 99  WIKNNNIVIS 108
           WI NN++VI+
Sbjct: 99  WIHNNHVVIA 108

BLAST of Cucsat.G11484 vs. ExPASy TrEMBL
Match: A0A6J1DKR8 (uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021831 PE=4 SV=1)

HSP 1 Score: 110 bits (274), Expect = 5.11e-27
Identity = 48/70 (68.57%), Postives = 61/70 (87.14%), Query Frame = 0

Query: 39  LNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLPA 98
           LNPY+LHH DNT LVLVT+ LTEENY SWSR+M I LS+KNK+GF+D +I++P G+LLPA
Sbjct: 39  LNPYYLHHTDNTELVLVTQPLTEENYSSWSRSMLIALSIKNKLGFIDGSISRPIGELLPA 98

Query: 99  WIKNNNIVIS 108
           WI NN++VI+
Sbjct: 99  WIHNNHVVIA 108

BLAST of Cucsat.G11484 vs. ExPASy TrEMBL
Match: A0A6J1DW89 (uncharacterized protein LOC111023702 OS=Momordica charantia OX=3673 GN=LOC111023702 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 1.06e-25
Identity = 55/97 (56.70%), Postives = 69/97 (71.13%), Query Frame = 0

Query: 12  LPETQENHNSSQSDTSAQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAM 71
           LP T  +  SS S  S+ T  + +   LNPY+LHH DNT LV V + LTE+NY SWSR+M
Sbjct: 12  LPPTGLSPESSSSPVSSST-LSGDASVLNPYYLHHTDNTGLVFVNQLLTEDNYTSWSRSM 71

Query: 72  TIGLSVKNKIGFVDETIAKPTGDLLPAWIKNNNIVIS 108
            I LSVKNK+ F+D  I +P+GDLLPAWI NN+IVI+
Sbjct: 72  MIVLSVKNKLDFIDGFIPRPSGDLLPAWIDNNHIVIA 107

BLAST of Cucsat.G11484 vs. ExPASy TrEMBL
Match: A0A5D3CMC2 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold952G00310 PE=4 SV=1)

HSP 1 Score: 101 bits (252), Expect = 1.55e-25
Identity = 47/75 (62.67%), Postives = 58/75 (77.33%), Query Frame = 0

Query: 28  AQTSFNQNQGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDET 87
           +Q S N ++ YLNPYFLHHNDNTSLVLV + L EENY+SWSRAM   LS+KNKI  +D T
Sbjct: 40  SQISHNPSETYLNPYFLHHNDNTSLVLVNELLIEENYVSWSRAMIFELSIKNKISLMDVT 99

Query: 88  IAKPTGDLLPAWIKN 102
           + +P  D+L AWI+N
Sbjct: 100 LPRPPSDMLLAWIRN 114

BLAST of Cucsat.G11484 vs. ExPASy TrEMBL
Match: A0A6J1DIP8 (uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020399 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 7.51e-25
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 0

Query: 38  YLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDLLP 97
           Y NPYFLHH+DNTSLVLV+  LT ENY SWSR+M I L+VKNK+GFVD +I +PTGDLL 
Sbjct: 24  YTNPYFLHHSDNTSLVLVSDPLTNENYTSWSRSMLIALTVKNKVGFVDGSIVRPTGDLLH 83

Query: 98  AWIKNNNIVIS 108
           +WI  NN+VIS
Sbjct: 84  SWIICNNVVIS 94

BLAST of Cucsat.G11484 vs. ExPASy TrEMBL
Match: A0A6J1CMF8 (uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012468 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 7.50e-22
Identity = 43/73 (58.90%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 36  QGYLNPYFLHHNDNTSLVLVTKQLTEENYISWSRAMTIGLSVKNKIGFVDETIAKPTGDL 95
           + Y NPY+LHH+DNTSLVLV+  L E NY SWSR+M I L+VKNKIGFVD +I++P+G  
Sbjct: 37  ENYSNPYYLHHSDNTSLVLVSDLLNENNYTSWSRSMIIALTVKNKIGFVDGSISRPSGAQ 96

Query: 96  LPAWIKNNNIVIS 108
           + +W   NN+VI+
Sbjct: 97  INSWKICNNVVIA 109

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031736906.14.36e-5584.26uncharacterized protein LOC105434586 isoform X3 [Cucumis sativus][more]
XP_031736905.14.48e-5584.26uncharacterized protein LOC105434586 isoform X2 [Cucumis sativus][more]
XP_031736904.11.22e-5484.26uncharacterized protein LOC105434586 isoform X1 [Cucumis sativus][more]
XP_011650144.12.93e-3066.22uncharacterized protein LOC105434731 [Cucumis sativus][more]
XP_022154608.11.06e-2668.57uncharacterized protein LOC111021831 [Momordica charantia][more]
Match NameE-valueIdentityDescription
A0A6J1DKR85.11e-2768.57uncharacterized protein LOC111021831 OS=Momordica charantia OX=3673 GN=LOC111021... [more]
A0A6J1DW891.06e-2556.70uncharacterized protein LOC111023702 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A5D3CMC21.55e-2562.67Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A6J1DIP87.51e-2570.42uncharacterized protein LOC111020399 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
A0A6J1CMF87.50e-2258.90uncharacterized protein LOC111012468 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 45..91
e-value: 4.0E-20
score: 71.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availablePANTHERPTHR37610:SF53SUBFAMILY NOT NAMEDcoord: 35..108
NoneNo IPR availablePANTHERPTHR37610FAMILY NOT NAMEDcoord: 35..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsat.G11484.T1Cucsat.G11484.T1mRNA