Cucsat.G11236 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G11236
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	PsbP domain-containing protein
Location	ctg1780: 972361 .. 974384 (+)
RNA-Seq Expression	Cucsat.G11236
Synteny	Cucsat.G11236

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTATTAATATAAATTTTCCTATTTAAAAAAAGAAAAGAAAAAATCTTATCCTAACGATCAGAAAGAGAAGTTAGTGTTTCCCTTTCTCGAGATTCCTGAAAATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGGTAATTCTTCACAAACTGTAATCTATCTGGAACTTGTTACTTGCATTTATCGTTACCGCTATACCTTTCTAATGTATAATCAGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAACATGCTTCTACACTTATCCTTTCCTGCTTCAATTCTGTCCATTTTTCTCATTCACTTGTTCTTTATCTGCACATTTGGTTATCATATTCAAAATGTTTAGCCCAAAATGTTTAGATTTTAAAACTACAAATCATAAATCAAATGGTTGCCAAGTGAGACCGTAAGTTTCTCAACCATGGATAAATTATTAGATTTATATTCATAAGCTTAATAGATATCTTTTAAAGTGTTCAGCTCAACGAGAACAAAAGATCTCAGGTTCAAATCTCACCCCCAAGTTGTATTACAATACCTTTTAAAGTTTGATGATCCGGAAGACAAATACACAAACAAAATGAAACTTGTAATCTCTCCTTTTAAAAACCTCTTCTAATTGTCAAAACAAAAGTTCTCTTTGGTCAAGTGTAATAGTTTCACTCGAACAAACGTTTCCAGTGTTTTCAACAGCAGAAATCACTGGCCGTGAAGCTTAGTAATAAGCAACAGAAAACCAGAATGTTGTAAGAGTAGCACTTCAAAGATTGTTGTGAGCTGTGGCATTCTAGTTTTCGTTATATATGTATGTGATGAAGTTTGAAATTTCATAGTTCAATGCTTAACATTTAACATTAATAATGTAATGTCCAGATTTGGTTTATTTATTTATTTATGCTTTTTTTTTACCCTTGAAAAGTTACATTTATTTTGAAACTTATTCGAGACAAGAAATGACATTTAAACTTGAAGGGCTTAGTGCAACTTTGAATGGAACTAACCCATAGGTTATAAGTTTAAGTTAATCCTTAATATGTTGATCTCTATTTCTTCAAATATAAAGTCATATGCTAACAACAATAATCCATATATATCTTACAATTATATGATATCAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGAAATGTTTTTGAGGGTTTTCAGGTGTAATTGCTGAAACATTGTACCTTCCATCACTAAGGCAAATTGCTTCTATTCATTTTAGAGTTTGATATTGTGTCCTGTCTCACTCATTGAATATTTCTTTATCCATCGATTAAGTAAAAGGTCACCAAAGATTGACAAAGAATCAATTTCAC

Coding sequence (CDS)

ATGGCCGTAATCCTCGACTCCTTCCTACCTTCAATTCAAACACTGAGTTCTTCATTTCGCCAAAGGATTCCCAGCACTTCTTCTACGCGGTGGCCTATGAATTCATTCCCCAAATGTTGCTCTGAATCTCAATCGATTAAAGGCGTTGCAGTTCCTAGGAGGAGTGCAATGGCGTTGATGTTGTCCACTTGTATTTTCTCTAATTCTGCTTTGGCTGTGTCATCCGTTGGGTTATTGGAATACATTGACACTTTTGATGGGTATTCCTTCAAATACCCTAAGAATTGGATTCAAGTTCGAGGGGCGGGGGCTGATATATTCTTCAGGGATCCCTTTGTTCTTGATGAGAATCTTTCGGTGGAGTTCTCGTCGCCGTCTTCATCTAGGTATAACAGCGTTCAGGATTTGGGACCTCCTGAAGAAGCTGGGAAGAAAGTGCTGAAGCAGTATTTGACAGAGTTCATGTCCACAAGGCTTGGAGTTAGAAGGGAATCTAACATTCTTTCTACTTCTTCCAGAATGGCTGATGATGGCAGAACTTACTACCAAGTTGAGGTAAACATAAAGTCATATGCAAACAACAATGAATTGGCAGTAATGCCACAAGATCGGGTGGTTCGTTTGGAATGGGACAGAAGATACCTTTCAGTTCTTGGAGTCGAAAACAGTCGTCTATATGAGTTGAGACTACAAACTCCAGAAAATGTATTTGTAGAAGAAGAAAATGACTTGCGCCAAGTTATGGATTCTTTCCGAGTCAACAAAGTGAATGCATGA

Protein sequence

MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKVNA

Homology

[Close]

BLAST of Cucsat.G11236 vs. ExPASy Swiss-Prot
Match: O23403 (PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD1 PE=1 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 1.3e-84
Identity = 158/221 (71.49%), Postives = 184/221 (83.26%), Query Frame = 0


Query: 39  CCSESQSIKGVAVPRRSAMALMLSTCIFSNSALA---VSSVGLLEYIDTFDGYSFKYPKN 98
           C ++++ +  V   +   M L++S  I S + L     S+    EYIDTFDGYSFKYP+N
Sbjct: 67  CLTDAKQVCAVGRRKSMMMGLLMSGLIVSQANLPTAFASTPVFREYIDTFDGYSFKYPQN 126

Query: 99  WIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFM 158
           WIQVRGAGADIFFRDP VLDENLSVEFSSPSSS Y S++DLG PEE GK+VL+QYLTEFM
Sbjct: 127 WIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFM 186

Query: 159 STRLGVRRESNILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYL 218
           STRLGV+R++NILSTSSR+ADDG+ YYQVEVNIKSYANNNELAVMPQDRV RLEW+RRYL
Sbjct: 187 STRLGVKRQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYL 246

Query: 219 SVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
           +VLGVEN RLY +RLQTPE VF+EEE DLR+VMDSFRV K+
Sbjct: 247 AVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEKI 287

[Close]

BLAST of Cucsat.G11236 vs. ExPASy Swiss-Prot
Match: O80634 (Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PNSL1 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 1.3e-04
Identity = 37/178 (20.79%), Postives = 74/178 (41.57%), Query Frame = 0


Query: 81  YIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPE 140
           ++D  DGYS+ YP +W +      D  F+D ++  +N+ V F     +  N + ++GP E
Sbjct: 91  FVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVGPME 150

Query: 141 EAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRTYYQVEVNIKS--YANNNELA 200
           E    ++K         +     +   +       +DG+ YY  E  +++  YA  +   
Sbjct: 151 EVVYDLVKH--------KFAAPNQVATIYDMKERVEDGKNYYTFEYGLRTPIYATTS--- 210

Query: 201 VMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEEENDLRQVMDSFRVNKV 257
                            + + V N+R Y L +   E  + + +  L+ V DS ++ ++
Sbjct: 211 ----------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQI 238

[Close]

BLAST of Cucsat.G11236 vs. NCBI nr
Match: XP_004139523.1 (psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KAE8652838.1 hypothetical protein Csa_022829 [Cucumis sativus])

HSP 1 Score: 509 bits (1312), Expect = 5.60e-182
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM
Sbjct: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 258
           ENDLRQVMDSFRVNKVNA
Sbjct: 241 ENDLRQVMDSFRVNKVNA 258

[Close]

BLAST of Cucsat.G11236 vs. NCBI nr
Match: XP_008464319.1 (PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis melo] >KAA0035717.1 psbP domain-containing protein 1 [Cucumis melo var. makuwa] >TYK30829.1 psbP domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 479 bits (1234), Expect = 4.35e-170
Identity = 244/258 (94.57%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 258
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Cucsat.G11236 vs. NCBI nr
Match: XP_038894971.1 (psbP domain-containing protein 1, chloroplastic [Benincasa hispida] >XP_038894972.1 psbP domain-containing protein 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 454 bits (1168), Expect = 5.76e-160
Identity = 239/262 (91.22%), Postives = 246/262 (93.89%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTS-STRWPMNSFPKCCSESQSIK-GVAVPRRSAMA 60
           MAVIL+SFLP I TL SS RQRIP TS S RWPM+S PKC SESQSIK GVAVPRRSAMA
Sbjct: 1   MAVILNSFLPPIHTLISSIRQRIPCTSPSPRWPMDSSPKCRSESQSIKKGVAVPRRSAMA 60

Query: 61  LMLSTCIFSNSALAVSS--VGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDE 120
           LMLST IFSNSALA  S  VGLLEYIDTFDGYSFKYPKNWIQVRGAG+DIFFRDPFVLDE
Sbjct: 61  LMLSTYIFSNSALAEPSPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGSDIFFRDPFVLDE 120

Query: 121 NLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 180
           NL VEFSSPSSSRYNSVQDLGPPEEAGK+VLKQYLTEFMSTRLGVRRESNILSTSSRMAD
Sbjct: 121 NLLVEFSSPSSSRYNSVQDLGPPEEAGKRVLKQYLTEFMSTRLGVRRESNILSTSSRMAD 180

Query: 181 DGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENV 240
           DG+TYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPENV
Sbjct: 181 DGKTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPENV 240

Query: 241 FVEEENDLRQVMDSFRVNKVNA 258
           FVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 FVEEENELRQVMDSFRVNKVNA 262

[Close]

BLAST of Cucsat.G11236 vs. NCBI nr
Match: XP_022961486.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7024032.1 PsbP domain-containing protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 447 bits (1149), Expect = 4.86e-157
Identity = 233/264 (88.26%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RWP-MNSFPKC----CSESQSIKGVAVPRR 60
           MAVILDSFLP I TLSSS R+ IP+ SS+ RWP ++S PKC     SESQ IK +AVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 258
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cucsat.G11236 vs. NCBI nr
Match: XP_023515691.1 (psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 444 bits (1142), Expect = 5.67e-156
Identity = 232/264 (87.88%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RWP-MNSFPKC----CSESQSIKGVAVPRR 60
           MAVILDSFLP I TL+SS R+ IP+ SS+ RWP ++S PK      SESQ IKG+AVPRR
Sbjct: 1   MAVILDSFLPPIHTLTSSSRKWIPTASSSPRWPPIDSSPKSRFSLSSESQPIKGLAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 258
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cucsat.G11236 vs. ExPASy TrEMBL
Match: A0A5D3E4R5 (PsbP domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00220 PE=4 SV=1)

HSP 1 Score: 479 bits (1234), Expect = 2.11e-170
Identity = 244/258 (94.57%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 258
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Cucsat.G11236 vs. ExPASy TrEMBL
Match: A0A1S3CLM8 (psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103502232 PE=4 SV=1)

HSP 1 Score: 479 bits (1234), Expect = 2.11e-170
Identity = 244/258 (94.57%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSSTRWPMNSFPKCCSESQSIKGVAVPRRSAMALM 60
           MAVIL SFLPSIQTL+S  RQRIPSTSSTR P+ SFPKCCS+SQSIK VAVPRR+AMAL+
Sbjct: 1   MAVILHSFLPSIQTLTSPIRQRIPSTSSTRSPIISFPKCCSQSQSIKDVAVPRRNAMALI 60

Query: 61  LSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120
           LSTCIFSNSA AV SVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV
Sbjct: 61  LSTCIFSNSAFAVPSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVLDENLSV 120

Query: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180
           EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT
Sbjct: 121 EFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRMADDGRT 180

Query: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240
           YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE
Sbjct: 181 YYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPENVFVEE 240

Query: 241 ENDLRQVMDSFRVNKVNA 258
           EN+LRQVMDSFRVNKVNA
Sbjct: 241 ENELRQVMDSFRVNKVNA 258

[Close]

BLAST of Cucsat.G11236 vs. ExPASy TrEMBL
Match: A0A6J1HAH2 (psbP domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111462051 PE=4 SV=1)

HSP 1 Score: 447 bits (1149), Expect = 2.35e-157
Identity = 233/264 (88.26%), Postives = 245/264 (92.80%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTSST-RWP-MNSFPKC----CSESQSIKGVAVPRR 60
           MAVILDSFLP I TLSSS R+ IP+ SS+ RWP ++S PKC     SESQ IK +AVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASSSPRWPPIDSSPKCRFSLSSESQPIKALAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSALA  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSALAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 258
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

[Close]

BLAST of Cucsat.G11236 vs. ExPASy TrEMBL
Match: A0A6J1HY63 (psbP domain-containing protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111467914 PE=4 SV=1)

HSP 1 Score: 440 bits (1131), Expect = 1.30e-154
Identity = 230/264 (87.12%), Postives = 243/264 (92.05%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPSTS-STRWP-MNSFPKC----CSESQSIKGVAVPRR 60
           MAVILDSFLP I TLSSS R+ IP+ S S RWP ++S PK      SES+ IK +AVPRR
Sbjct: 1   MAVILDSFLPPIHTLSSSSRKWIPTASPSPRWPPIDSSPKSRFSLTSESKPIKALAVPRR 60

Query: 61  SAMALMLSTCIFSNSALAVSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADIFFRDPFVL 120
           SAMAL+LS+CIFSNSA+A  SVGLLEYIDTFDGYSF YPKNWIQVRGAGADIFFRDPFVL
Sbjct: 61  SAMALILSSCIFSNSAMAEQSVGLLEYIDTFDGYSFNYPKNWIQVRGAGADIFFRDPFVL 120

Query: 121 DENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180
           DEN+SVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM
Sbjct: 121 DENISVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESNILSTSSRM 180

Query: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLYELRLQTPE 240
           ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVEN+RLYELRLQTPE
Sbjct: 181 ADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENNRLYELRLQTPE 240

Query: 241 NVFVEEENDLRQVMDSFRVNKVNA 258
           NVFVEEEN+LRQVMDSFRVNKVNA
Sbjct: 241 NVFVEEENELRQVMDSFRVNKVNA 264

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BLAST of Cucsat.G11236 vs. ExPASy TrEMBL
Match: A0A6J1DTH5 (psbP domain-containing protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111023855 PE=4 SV=1)

HSP 1 Score: 427 bits (1098), Expect = 1.84e-149
Identity = 226/272 (83.09%), Postives = 242/272 (88.97%), Query Frame = 0


Query: 1   MAVILDSFLPSIQTLSSSFRQRIPST---SSTRWPMNSFPKCC------SESQSIKGVAV 60
           MAVILDS  P I +LSSS R+RIP+T    S RWP +SFPK        S+SQ+IK +AV
Sbjct: 1   MAVILDSLSPPIHSLSSSIRRRIPTTLPSPSPRWPTDSFPKSRASLISQSQSQTIKALAV 60

Query: 61  PRRSAMALMLSTCIFSNS----ALA-VSSVGLLEYIDTFDGYSFKYPKNWIQVRGAGADI 120
           PRRSAMAL+LSTCIFSN+    ALA   S GLLEYIDTFDGYSFKYPKNWIQVRGAGADI
Sbjct: 61  PRRSAMALILSTCIFSNTNTNTALADPPSPGLLEYIDTFDGYSFKYPKNWIQVRGAGADI 120

Query: 121 FFRDPFVLDENLSVEFSSPSSSRYNSVQDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180
           FFRDP+VLDENLSVEFSSPSSSRY SV+DLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN
Sbjct: 121 FFRDPYVLDENLSVEFSSPSSSRYKSVEDLGPPEEAGKKVLKQYLTEFMSTRLGVRRESN 180

Query: 181 ILSTSSRMADDGRTYYQVEVNIKSYANNNELAVMPQDRVVRLEWDRRYLSVLGVENSRLY 240
           +LSTSSR ADDG+TYYQVEVNIKSYAN+NELAVMPQDRVVRLEWDRRYLSVLGVENSRLY
Sbjct: 181 VLSTSSRTADDGKTYYQVEVNIKSYANSNELAVMPQDRVVRLEWDRRYLSVLGVENSRLY 240

Query: 241 ELRLQTPENVFVEEENDLRQVMDSFRVNKVNA 258
           ELRLQTPENVFVEEEN+LRQVMDSFRVN+VNA
Sbjct: 241 ELRLQTPENVFVEEENELRQVMDSFRVNRVNA 272

The following BLAST results are available for this feature:

BLAST of Cucsat.G11236 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23403	1.3e-84	71.49	PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]
O80634	1.3e-04	20.79	Photosynthetic NDH subunit of lumenal location 1, chloroplastic OS=Arabidopsis t...	[more]

BLAST of Cucsat.G11236 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139523.1	5.60e-182	100.00	psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis sativus] >KA...	[more]
XP_008464319.1	4.35e-170	94.57	PREDICTED: psbP domain-containing protein 1, chloroplastic isoform X1 [Cucumis m...	[more]
XP_038894971.1	5.76e-160	91.22	psbP domain-containing protein 1, chloroplastic [Benincasa hispida] >XP_03889497...	[more]
XP_022961486.1	4.86e-157	88.26	psbP domain-containing protein 1, chloroplastic [Cucurbita moschata] >KAG6590498...	[more]
XP_023515691.1	5.67e-156	87.88	psbP domain-containing protein 1, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cucsat.G11236 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E4R5	2.11e-170	94.57	PsbP domain-containing protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CLM8	2.11e-170	94.57	psbP domain-containing protein 1, chloroplastic isoform X1 OS=Cucumis melo OX=36...	[more]
A0A6J1HAH2	2.35e-157	88.26	psbP domain-containing protein 1, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1HY63	1.30e-154	87.12	psbP domain-containing protein 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1DTH5	1.84e-149	83.09	psbP domain-containing protein 1, chloroplastic OS=Momordica charantia OX=3673 G...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 72..253 e-value: 9.5E-52 score: 177.4
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 34..257
None	No IPR available	PANTHER	PTHR31407:SF15	PSBP DOMAIN-CONTAINING PROTEIN 1, CHLOROPLASTIC	coord: 34..257
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 78..253 e-value: 1.0E-48 score: 165.4
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 81..253

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G11236.T1	Cucsat.G11236.T1	mRNA
Cucsat.G11236.T6	Cucsat.G11236.T6	mRNA
Cucsat.G11236.T2	Cucsat.G11236.T2	mRNA
Cucsat.G11236.T4	Cucsat.G11236.T4	mRNA
Cucsat.G11236.T3	Cucsat.G11236.T3	mRNA
Cucsat.G11236.T5	Cucsat.G11236.T5	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0048564	photosystem I assembly
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer
molecular_function	GO:0005509	calcium ion binding