Cucsat.G1104 (gene) Cucumber (B10) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.AGGTAAAATAATACAAAAGAAGTTTCTCTAATGAAAAGCATTTAAGGAGGCAATTCCCTCCCTTAGGGCAAGGGAATGGTCCAAAGGGAGTCCAAATTTCACGTTGTTTCTCCCTTGGTATCGCGGCGAGTTTTCCCCGATTCATCTCCTCCACTGAACCCTCCGCAGGAAACAGACTGCAAGAACCGAGCGAGTAACAATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCTGGAGCCGAAGCCGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGGTTTGTAGCTTATAACCATTTTGGTTTCTAGGCCATTGGGTGGAAAAATGGACGTGCAAATAGGCTATAGTGCACCTCCAACTTCCAATCCAGAAATTGCATCAACTAACAGACACTAGTTAACCTCTAAACTGAAATCTACGGTTTCTCTCCCCGCCGCAATGGGGGTCATTTAGTTTTTCCGATGAGGAAAGGTTTAGTAATCTGAAGGAAAATGGAGTATGGAGGTTTCACTGGTGCTCCCAATGCTTATTATTGCTGAGGTTGAGGAACCGGTTTTCTCCATGATCCAGGTAGATGCAAAGCCATCTGAGGAATTCTTTTTTCGTTCCTAAAAAGGAAACGTTAATCCTTAAACTGAAATCTATGGTTTCTCTCCCCGTCGCAATGGGGTCCATTAAGTTTTTCCGACGAGGAAAAGTTCAATTATCTGAAGGACAATGGATTATGGAGGTTTCATCCATAACTGGCGCTCCCAATGCTTATTATTGCTGAGGTCGAGGAACCAGTTTTCTCCATCCAGATAGATGCACACTTTTCTGAGGAATTATTTTTTTGTTCCAAAAAAAGAAAAGTTAACCTTTGAACTGAGATCCATGGTTTCTCTCCCCGCCGCAATGGGGGCCATTAAGTTTTTTCGATGAGGAAAGGTTTAGTAATCAGAAGGAAAATGGAGTATGGAGGTTTCATCCAAAACTGGTGCTCCCAATGCTTATTGTTGCTGAGGTTGAGGAACCAGTTATCTCCATGATCCAGGTAGATGCAAAGCCATCTGAGGAATTATTTTTTCGTTCCAAAAAAAGAAAAGTTAACCTTTAAACTGAGATCTATGGTTTCTCTCCGGGCTGCAATGGGGGCCATTAAGTTTTTCCGAAGAGGAAAAGTTAATTTGAAGGAAAATGGAGTATGGAGGTTTCATCCATAACTGGCGCTCCCAATGCTTATTATTGCTGAGGTCGAGAACCACTTTTCTCCATGATCCAGGTAGATGCAAAGCCATCTGAGGAATTATATTTTCGTTCCAAAAAAAGAAAAGTTCACCTTTAAACTGAGATGGGATCTTTACGGGAAGTACTTGTTACCTTGTTGGACCTTATCTAAATTGTGTAATGGCAAACTGTGCTTGTATGGTAAATTCCCCGTGTTCTTTCTTGAACTTTGGGGGATGAAAATCAAATTTCATGAGCTCTCTTGAACCTTTAGAATTGAGAATCTTTTGGTCTCTAGATTTGGAATATCTACACGATGGACTCTTGGTGATATAAGTTGACTTCTGGGCATTGACAATCCCCTCCATTTTTTGATGAGAATGCTGAACTCTTAAAAGGTTGAAACACTTGATATAGAGATTATATTACACAGCAGGTTCAAATACTACTTTGGTCCTTGCTTGGTCATACTCGCCAAAGTATAGAGACTAGAGCAAACATTTTGAAATTATAGGTACGAAAATAAGCCACAGTCCATAGTTGAAAGTATAAAGATCGGAAGGACTCATAGTTGAATGTATAGGGTCCAAAATGAACCAAAACCAAAAAGTGTAAGGTCCAAAGTAGTATATAGTAATAGTATTACTCTATAAATTGTTGAAATTGATATTTTATTCAAGAAATATCTGGTACTGAACCCTATAATTTATTTGTGAGCTCGACAGTTAAGCCAGAGTTAACATAACTTGAAGATGTTATTCTTTTGGAATGTTCATTCATTCATGTAAAGTTAGTTGTGGATTCCTTCTGTAGGCTTATTTTTTTGTCTCTCTATTTTTGTATTCATTTGTACATTCTTTCACTCTGAGTTTCTTCCCTATGACATGAAATATTTTACTTAAAATTTCTGGTGGAACTTTATGAGCTGCACGCAATTACCCATAGTTTTCAAAGAAAAAACAAACGGCTTACGATATATTTCATTGTCGTCGCCTGCAGAATCCTGATAACAAAAGAGAGATCTACTGCGACGATAAACTTAAAGCCATATTCGAAGGAAGGGAAAAGGTTGGTTTCTTAGAGATCGGGAAATCTCTCGCACGCCATTTTGTAAAGAACTGATGCAGGTGATGAGAGATCAACTTTCAATCCCTGTTCTAACTTACTTTTTCAATCCTTTTAGTTAGCAATAGTCTTGTTTAGGTAACATTGATGAACTTCTCCCCAATGTGATGTCCAGTAAGTTTGTAAAAAGGATAAACACCAAAGTAGATGGCTTCCATTTTCTTCACAAGTTGAAGCCTTCTTTTCCCTAATCAGATTGTACATTTTGTGTTGTATGGTGCTTCCACATATTTTGTTTCAGCTCCAAATCATATTAATGGATGAAATATAAATGTAAAAAAAT ATGTCGTCTGGATTCAACAATGGCATAAGGGTTTTCAGAGCCTGTAGAGCTCTCTTAGCTCCGTCCAAATCCTCTGCTACCGTTCCCGCCACCGCTCCCAAATCCAAGACGACCTCGAAGCTGGAGCCGAAGCCGAAGCTGCCCAAGGTGAAGACTCCTCCGAGCTCCGTTGCTGCTGGTGTTGCAGCCACGCCCGAGCCGAAAATAAAAAAGGAAATGTCTCGACCGTCGGGGATTCTGAAGGTCACTCAGGTTTCTCCAGCGTTGAGCAACTTCTTGGGTGTATCGGAGGCTTCTCGCAGCGATGCCGTCACGCAGATCTGGTCTTACATAAAGCTCCACAACCTTCAGGTTTGTAGCTTATAA MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAGVAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQVCSL Homology
BLAST of Cucsat.G1104 vs. NCBI nr
Match: XP_004133931.1 (upstream activation factor subunit spp27 [Cucumis sativus] >KGN56620.1 hypothetical protein Csa_011434 [Cucumis sativus]) HSP 1 Score: 219 bits (558), Expect = 5.19e-71 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Cucsat.G1104 vs. NCBI nr
Match: XP_008438197.1 (PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo] >XP_008438198.1 PREDICTED: upstream activation factor subunit UAF30-like [Cucumis melo]) HSP 1 Score: 193 bits (491), Expect = 8.09e-61 Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of Cucsat.G1104 vs. NCBI nr
Match: XP_038877222.1 (upstream activation factor subunit UAF30 [Benincasa hispida] >XP_038877226.1 upstream activation factor subunit UAF30 [Benincasa hispida]) HSP 1 Score: 171 bits (434), Expect = 3.61e-52 Identity = 97/117 (82.91%), Postives = 105/117 (89.74%), Query Frame = 0
BLAST of Cucsat.G1104 vs. NCBI nr
Match: XP_022980440.1 (protein TRI1-like [Cucurbita maxima]) HSP 1 Score: 152 bits (383), Expect = 2.00e-44 Identity = 86/117 (73.50%), Postives = 95/117 (81.20%), Query Frame = 0
BLAST of Cucsat.G1104 vs. NCBI nr
Match: XP_022924718.1 (upstream activation factor subunit spp27-like [Cucurbita moschata]) HSP 1 Score: 147 bits (372), Expect = 9.37e-43 Identity = 84/117 (71.79%), Postives = 94/117 (80.34%), Query Frame = 0
BLAST of Cucsat.G1104 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1) HSP 1 Score: 219 bits (558), Expect = 2.51e-71 Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0
BLAST of Cucsat.G1104 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1) HSP 1 Score: 193 bits (491), Expect = 3.92e-61 Identity = 108/118 (91.53%), Postives = 111/118 (94.07%), Query Frame = 0
BLAST of Cucsat.G1104 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1) HSP 1 Score: 152 bits (383), Expect = 9.66e-45 Identity = 86/117 (73.50%), Postives = 95/117 (81.20%), Query Frame = 0
BLAST of Cucsat.G1104 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1) HSP 1 Score: 147 bits (372), Expect = 4.54e-43 Identity = 84/117 (71.79%), Postives = 94/117 (80.34%), Query Frame = 0
BLAST of Cucsat.G1104 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1) HSP 1 Score: 143 bits (360), Expect = 3.11e-41 Identity = 87/118 (73.73%), Postives = 95/118 (80.51%), Query Frame = 0
BLAST of Cucsat.G1104 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 65.9 bits (159), Expect = 2.6e-11 Identity = 47/116 (40.52%), Postives = 56/116 (48.28%), Query Frame = 0
BLAST of Cucsat.G1104 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 53.1 bits (126), Expect = 1.8e-07 Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 0
BLAST of Cucsat.G1104 vs. TAIR 10
Match: AT1G49520.1 (SWIB complex BAF60b domain-containing protein ) HSP 1 Score: 47.4 bits (111), Expect = 9.7e-06 Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 0
BLAST of Cucsat.G1104 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 45.8 bits (107), Expect = 2.8e-05 Identity = 33/98 (33.67%), Postives = 48/98 (48.98%), Query Frame = 0
BLAST of Cucsat.G1104 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein ) HSP 1 Score: 44.7 bits (104), Expect = 6.3e-05 Identity = 19/40 (47.50%), Postives = 26/40 (65.00%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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