Cucsat.G10167 (gene) Cucumber (B10) v3

Overview


Name	Cucsat.G10167
Type	gene
Organism	Cucumis sativus L. var. sativus cv B10 (Cucumber (B10) v3)
Description	Pentatricopeptide repeat-containing protein
Location	ctg1673: 6643013 .. 6646990 (+)
RNA-Seq Expression	Cucsat.G10167
Synteny	Cucsat.G10167

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTCGTTGCCACTGCGTCTTCTTCTTCTTTACATTGCGACCAGGAAAAAGGCATTCTTCAAATTATATATATGAATCGAATTTTATTTCTTTCACTTAGTAAACTCACAGATGAAGTCTGATTTATAAACACCTTCACATTCTCACTCTTTGGGAGGCGTCTAAAGTTGTATAAAGATGGACTTCCAATACTCAATTGTGGGGTAGTTGGCTTATTTAATTGTATTCGGAGACAACTTTCTTCCTCCCATTCTACGATTGCTCTTTAACAAAATGGTGCAACCCAACACTGTTCGTCTCAGTAACCATCGTCTCGTGGACCAAATCTTGGTCGCAATGCTTAAAAACCGACCATTCGACACCCACGTCCATTCTGCAGCTTCTACTTCCACCACACATCAGTTATGGAGTTCCGACTCCGTTTCCGACGTTCTAAGATCGGTCCCTCGGTTCTTTTTTCAATCAGCCCGATCTATTGGCACCCAAAAGGGTTTTCGGCATCGTACTCCTCTTAAGCAGAGGAAATTGAAAGAGGAGGCTTACAAGTTCCGTAACAACGTGCTTGTTCTCGGCCCTGGTGCTCACAGGGACCCTTTCAAGGCTAAGCTTGGATTGAATAAAGCGTTGGAGTTTTTCTATTGGGTCGAAACCCATTTTGGGTTTCAACACGACGAGATTACTTGCAGAGAGATGGCTTGCGTATTGGCTCGAGGGAATACATTGATGGGTCTTTGGGACTTTTTGAAGGAAATGTCCAGGCGGGAAAACGGTGGGCTTGTTACTACGGCGACCATCACGTGTTTGATAAAAGTTCTAGGAGAGGAAGGTCTGGTGAATGAAGCTCTGACTGCATTTTATAGGATGAAGCAGTTTCATTGTAAGCCTGATGTTTATGCTTATAATACTGTTATCAATGTTTTATGTAGGATTGGGAATTTCAAGAAGGCTAGGTTTTTGTTGGAACAGATGGAGTTGCCTGGATTTAGATGCCCACCTGACATTTTCACATATACAATTCTAATTAGTTCTTATTGTAAATATAGCTTGCAAACTGGCTGCAGAAAGGCCATTCGAAGGAGGTTGTGGGAAGCCAATCACTTGTTTAGAATCATGTTGTTTAAGGGATTTTCACCAGATGTTGTGACCTACAATTCTTTGATTGATGGATGTTGTAAAACGTACAGAATCCAGCGGGCATTGGAATTGTTTGAGGATATGAGCAAAAGGGGCTGCACTCCTAATCGGCTTACTTACAATTCTTTCATCAGATACTACAGTGCTGTGAACGAGATTGACCAAGCAATCAAAATGTTAAGAATGATGCAGAAGATGAACCATGGAATTGCTACATCCAGTTCTTATACTCCTATTATTCATGCTCTATGTGAAGGAGGAAAGGTAATTGAGGCCCGTGATTTCCTTCTTGAGTTGCTTGAGGAAGGCTCTGTGCCTAGAGAGTATACCTATCAGTTGGTATGTAATCTGCTGAACTCAGCAGGCAAAGCAAGTTTACTAGATGAAAACGTGCACGAAAGAATAAGACATGGAATAGAAAATAGGTATAGGGAAGTAAAGAAAGTCAAGCTAATTATGTCAAGGAAAGGATACTGATGCCTGTAATGAACGAAGACAGTAGCCAGACTTTTCACGGTGAGGTAAAGAGGGGTGGATGAAACCATGTTTGACAATTTATTATCTCCACATCCACTCTCAGCAGCCCATTGTGACAATTGTCTTGTGGTTTTAACCAAGGTAAGTCTCCTCCTCAAAGATAATATATGTTTGCAGGGGGGATTTTTGTTTTTTATCTTTGTTCATCAATATATGCTTTTGTCTGTTTCTTATCATGCGAAAAAAAAAAGTCTAAAATTTTTGTGTCTATCTAGTTCCATTTATGGTCCGATCTTTTTCTCTTAACTCATGGTCGCTCTGCTGATGACTTGTTTTGTTTCTGTCCTTATTTGGTGCTATAGGCTCAAAGGAAATCATCATTGGTTACAAATGATTTTCAGGGGGGTTGAATGCAAGGTATGCTATAAGTAGAATTTTCAATTAAAAAGATGTAATATGTGAATTGGCATTTTGGTTTATATATTGGTGCTCCTAAATTTGTGGGTGTGTAAAATGGTTGTAAACTATATGCTGTGAAAGTATGGTCCCTCTTATAATTTTGAGTTCTAGGATATGTCCTGTTTCTCAGTTTCCCATCCACTTTTTTCTTCACAATAATAGATGCTATCTGGAAGTTTTTATTTGAAATAGGTTCTAATTTTCGGTGTAAATATGCTTGGGTAGTTGTTCTTTTTGTAGGTTACTATCTTTTCCTGATTTGTTTGGATCCTTAAACTTTGTGTAAAGCAATTTTAGATCTTAGATGTAAAACAACTTTCCCTAATTTTAGATGTAAAACAACTGAATTTATTTAAGCTATCTCCTCATTGAAACACTTAAACAAAGTACAACAGTTGTAGCGTGAGGATTGAACCTCTGACCTCAAGGGATGGAATCAACTCAATATCATAAAGCTAAACTCAATTTGATTAGTCATTGAAACATTTAAAGATCGAATAAAGCACTGTTTCCAAGCATAAGTCATCCTAGGTTTTGTTTGTCAGAACCATATTCATCTAGATTTTCATTGTTCCCTATGAACTTGGGTATTTGGATTCACCTTCATTCTGTTAATTTGGAGTAGATTCCTCCATACTTCCTATCAGTTCTCTAAATCCTAGGCTCTAATCCTATTAGGTTGGAGATATAGGTAAAAAATTTATGCAGAGTGGGGGAGATTATTAGGTTGGTCGTGTTAGATCTTTGATGGGGGATATGGATGTTTGGAGATTGGGAATTCATCTTTGAATAATGGAGCACCCTTTGCAAAGTGGTCGAGGTGGTTTCAGATGGCTAACTTAACGATTTTTAGCATAAGGTTGTAAGCAGGTGTATTGTTCACCTTTATTGGTCGAGATACTATAGTAGATACTAATGACGCGACTCATGGCTTTGTCACATTTCTTCAGTTTTGTTAACTACGTTATTAAGGATGAGATTCGTATTTAGTTCTCGAAGGACGATTATATAGTCAACAATGCCTCCTTTTGTTCTCTTTCTCGTCTCTTTAGTTTGACAACTCTGGCCTTTACAATGTTATTTATTTAGCCATTGTGTTTTTACTGTGAGTTGTCTTCTCTTAATTTTTTCCATTAGGAGTGATCCAATGTAAAGGGCTTAATGATTTGGCTCCTCTTTTAACCGTTATCCCAAGTTAAAAGATGGTCAATTTTAACTCTTTTTGGTTGACAGGTGCAATTTTAACTCTTCTATAGCTAAAGATAAAGCTCCTTTTTGGGTCTTACTCATCGTCTTTTTGGGAGCTATCATTGAGAAATTGAGAAATTGAGAGGTGTCTTGACAGGGAGGTAGGCTCACTTTGATCCAACATCCAAGCCACGTTTACCAACCTATCCACGTACTTCCTTCCTCTTTTTAAGATATCATCCATGACGAGTTATGGGATTGAGGAGCTATACAGAAAATTCAATTGGAGAGGGCACAATGACAAAAGAAACATACACTCTATCAATTGACATCAAGTTCAACTTCCTATTCGAAGAGGGACCTGGAGCCAACTTTGAGAAAAAGAAACAAATGCCTATTGGCAAAATGGATTTAGAGATACCGGCTTGAGACAGGTGCTCTGTGGAGGCGCCATATTGATGCTAAGTACGACTCACCCCTCCATTCAGAAAGCATATCCTTCAATCTTTATAAAGACTAGTAGAATTATATTGCTAAGATGCTGGTTTGATTCATGATAACATTGAGAATGTGATTGGAAATGGTGAGAAAACATCATTTTTGAATTAACTACGAAGTTGGAACGGAAAGAATGCAAATCATGCAAGCTGAAGCAAACATCAATTTGAAGGATTAAACATGTTTGATCTTGAAATGAAAAATAGAGTTTTATAAACATACCTTGATGTAGTTCCAAATTGAAGCAATACTGTTGCTGTCTTTGATCACGAACACTTTGTGAACCAAGATTTAGAACGGTTGTGGAAACCAAATTTGTGATGAATTTGAAGGGAATTTGAAGTTTATGAGATTTTGTGTTAAAAAGAGATTTTTAACATGAATCA

Coding sequence (CDS)

ATGGTGCAACCCAACACTGTTCGTCTCAGTAACCATCGTCTCGTGGACCAAATCTTGGTCGCAATGCTTAAAAACCGACCATTCGACACCCACGTCCATTCTGCAGCTTCTACTTCCACCACACATCAGTTATGGAGTTCCGACTCCGTTTCCGACGTTCTAAGATCGGTCCCTCGGTTCTTTTTTCAATCAGCCCGATCTATTGGCACCCAAAAGGGTTTTCGGCATCGTACTCCTCTTAAGCAGAGGAAATTGAAAGAGGAGGCTTACAAGTTCCGTAACAACGTGCTTGTTCTCGGCCCTGGTGCTCACAGGGACCCTTTCAAGGCTAAGCTTGGATTGAATAAAGCGTTGGAGTTTTTCTATTGGGTCGAAACCCATTTTGGGTTTCAACACGACGAGATTACTTGCAGAGAGATGGCTTGCGTATTGGCTCGAGGGAATACATTGATGGGTCTTTGGGACTTTTTGAAGGAAATGTCCAGGCGGGAAAACGGTGGGCTTGTTACTACGGCGACCATCACGTGTTTGATAAAAGTTCTAGGAGAGGAAGGTCTGGTGAATGAAGCTCTGACTGCATTTTATAGGATGAAGCAGTTTCATTGTAAGCCTGATGTTTATGCTTATAATACTGTTATCAATGTTTTATGTAGGATTGGGAATTTCAAGAAGGCTAGGTTTTTGTTGGAACAGATGGAGTTGCCTGGATTTAGATGCCCACCTGACATTTTCACATATACAATTCTAATTAGTTCTTATTGTAAATATAGCTTGCAAACTGGCTGCAGAAAGGCCATTCGAAGGAGGTTGTGGGAAGCCAATCACTTGTTTAGAATCATGTTGTTTAAGGGATTTTCACCAGATGTTGTGACCTACAATTCTTTGATTGATGGATGTTGTAAAACGTACAGAATCCAGCGGGCATTGGAATTGTTTGAGGATATGAGCAAAAGGGGCTGCACTCCTAATCGGCTTACTTACAATTCTTTCATCAGATACTACAGTGCTGTGAACGAGATTGACCAAGCAATCAAAATGTTAAGAATGATGCAGAAGATGAACCATGGAATTGCTACATCCAGTTCTTATACTCCTATTATTCATGCTCTATGTGAAGGAGGAAAGGTAATTGAGGCCCGTGATTTCCTTCTTGAGTTGCTTGAGGAAGGCTCTGTGCCTAGAGAGTATACCTATCAGTTGGTATGTAATCTGCTGAACTCAGCAGGCAAAGCAAGTTTACTAGATGAAAACGTGCACGAAAGAATAAGACATGGAATAGAAAATAGGTATAGGGAAGTAAAGAAAGTCAAGCTAATTATGTCAAGGAAAGGATACTGA

Protein sequence

MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVNEALTAFYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPPDIFTYTILISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFSPDVVTYNSLIDGCCKTYRIQRALELFEDMSKRGCTPNRLTYNSFIRYYSAVNEIDQAIKMLRMMQKMNHGIATSSSYTPIIHALCEGGKVIEARDFLLELLEEGSVPREYTYQLVCNLLNSAGKASLLDENVHERIRHGIENRYREVKKVKLIMSRKGY

Homology

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BLAST of Cucsat.G10167 vs. ExPASy Swiss-Prot
Match: Q1PFC5 (Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana OX=3702 GN=At1g77405 PE=2 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.3e-67
Identity = 122/194 (62.89%), Postives = 155/194 (79.90%), Query Frame = 0


Query: 12  HRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIGTQ 71
           +R+VDQ++ AM++NRPFD    +  ++ST  + W+   VSDVL S+PRFFF S RSIG Q
Sbjct: 9   NRIVDQLITAMIQNRPFD----AVLASSTVAKPWTQQLVSDVLHSIPRFFFISPRSIGRQ 68

Query: 72  KGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFGFQ 131
           KGFRHR+PLKQR L +E+ + R+ VLVLGPGA+ DP K  +GL KALEFF+W+ETHFGF 
Sbjct: 69  KGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIETHFGFD 128

Query: 132 HDEITCREMACVLARGNTLMGLWDFLKEMSRRENG-GLVTTATITCLIKVLGEEGLVNEA 191
           H+EITCR+MAC+LA+GN   GLWDFL+++SRRENG  +VTTA+ITCL+K LGEEG V EA
Sbjct: 129 HNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEEGFVKEA 188

Query: 192 LTAFYRMKQFHSCK 205
           L  FYRMK++H CK
Sbjct: 189 LATFYRMKEYH-CK 197

[Close]

BLAST of Cucsat.G10167 vs. ExPASy Swiss-Prot
Match: Q9LUJ4 (Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g22670 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 28/92 (30.43%), Postives = 48/92 (52.17%), Query Frame = 0


Query: 113 GLNKALEFFYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTA 172
           G N+A  FF W  +  G+ H   T   M  VL +      +W+ + EM++ E   LVT  
Sbjct: 145 GWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEESKLVTLD 204

Query: 173 TITCLIKVLGEEGLVNEALTAFYRMKQFHSCK 205
           T++ +++ L + G  N+A+ AF  M++ +  K
Sbjct: 205 TMSKVMRRLAKSGKYNKAVDAFLEMEKSYGVK 236

[Close]

BLAST of Cucsat.G10167 vs. NCBI nr
Match: XP_004149831.1 (pentatricopeptide repeat-containing protein At1g77405 [Cucumis sativus] >KGN51257.1 hypothetical protein Csa_008923 [Cucumis sativus])

HSP 1 Score: 408 bits (1048), Expect = 2.35e-139
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF
Sbjct: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF
Sbjct: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV
Sbjct: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGEEGLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEEGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. NCBI nr
Match: TYK05755.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 392 bits (1006), Expect = 5.54e-133
Identity = 193/204 (94.61%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           MVQPNTVRL+NHRLVDQILVAML+NRPFDTH+H AASTSTTHQLWSSDS+SDVLRSVPRF
Sbjct: 1   MVQPNTVRLTNHRLVDQILVAMLQNRPFDTHIHPAASTSTTHQLWSSDSISDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGP AHRDPFK KLGL+KALEF
Sbjct: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPAAHRDPFKVKLGLSKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHFGFQHDEITCREMACVLARGN LMGLWDFLKEMSRR NGGLVTTATITCLIKV
Sbjct: 121 FYWVETHFGFQHDEITCREMACVLARGNRLMGLWDFLKEMSRRGNGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGEEGLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEEGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. NCBI nr
Match: XP_008463528.1 (PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Cucumis melo] >XP_008463529.1 PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Cucumis melo])

HSP 1 Score: 389 bits (999), Expect = 6.39e-132
Identity = 193/204 (94.61%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           MVQPNTVRL+NHRLVDQILVAML+NRPFDTH+H AASTSTTHQLWSSDSVSDVLRSVPRF
Sbjct: 1   MVQPNTVRLTNHRLVDQILVAMLQNRPFDTHIHPAASTSTTHQLWSSDSVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGP AHRDPFK KLGL+KALEF
Sbjct: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPAAHRDPFKVKLGLSKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHF FQHDEITCREMACVLARGN LMGLWDFLKEMSRR NGGLVTTATITCLIKV
Sbjct: 121 FYWVETHFEFQHDEITCREMACVLARGNRLMGLWDFLKEMSRRGNGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGEEGLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEEGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. NCBI nr
Match: XP_038896909.1 (pentatricopeptide repeat-containing protein At1g77405 [Benincasa hispida])

HSP 1 Score: 375 bits (962), Expect = 3.49e-126
Identity = 185/204 (90.69%), Postives = 193/204 (94.61%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           M Q NT+RLSN RLVDQILVAML+NRPFDTH+HSAASTSTTH  WSS+SVSDVLRSVPRF
Sbjct: 1   MAQSNTLRLSNPRLVDQILVAMLQNRPFDTHIHSAASTSTTHHQWSSESVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHR PLKQRKLKEEAYKFRNNVLVLGP AHRDPFK +LGLNKALEF
Sbjct: 61  FFQSARSIGTQKGFRHRAPLKQRKLKEEAYKFRNNVLVLGPAAHRDPFKVELGLNKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHFGFQHDEITCREMAC+LARGN LMGLWDFLKEMSRR +GGLVTTATITCLIKV
Sbjct: 121 FYWVETHFGFQHDEITCREMACILARGNRLMGLWDFLKEMSRRGHGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGE+GLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEQGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. NCBI nr
Match: XP_022131430.1 (pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131438.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131447.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131456.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131464.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131472.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131480.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131490.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131498.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131508.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_022131516.1 pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia])

HSP 1 Score: 342 bits (876), Expect = 3.06e-113
Identity = 167/204 (81.86%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           M Q   +R SN RL+DQ+ VAML+NRPFDTH+  + ST +T+QLW+S+SVSDVLRSVPRF
Sbjct: 1   MAQLKMIRFSNSRLIDQVFVAMLQNRPFDTHIDRSTSTFSTNQLWNSESVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQS RSIG QKGFRHRTPLKQRKLKEEAYKFRNNVLVLGP AHRDP+K +LGLNKALEF
Sbjct: 61  FFQSIRSIGCQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPAAHRDPYKVELGLNKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVE HFGF H+E+TCREMACVLARGN L GLWDFLKEMS+R NGGLVTTATITCLIKV
Sbjct: 121 FYWVEIHFGFIHNEMTCREMACVLARGNRLPGLWDFLKEMSKRGNGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGE+GLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEQGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. ExPASy TrEMBL
Match: A0A0A0KS49 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505180 PE=4 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 1.14e-139
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF
Sbjct: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF
Sbjct: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV
Sbjct: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGEEGLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEEGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. ExPASy TrEMBL
Match: A0A5D3C2Y8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002440 PE=4 SV=1)

HSP 1 Score: 392 bits (1006), Expect = 2.68e-133
Identity = 193/204 (94.61%), Postives = 198/204 (97.06%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           MVQPNTVRL+NHRLVDQILVAML+NRPFDTH+H AASTSTTHQLWSSDS+SDVLRSVPRF
Sbjct: 1   MVQPNTVRLTNHRLVDQILVAMLQNRPFDTHIHPAASTSTTHQLWSSDSISDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGP AHRDPFK KLGL+KALEF
Sbjct: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPAAHRDPFKVKLGLSKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHFGFQHDEITCREMACVLARGN LMGLWDFLKEMSRR NGGLVTTATITCLIKV
Sbjct: 121 FYWVETHFGFQHDEITCREMACVLARGNRLMGLWDFLKEMSRRGNGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGEEGLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEEGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. ExPASy TrEMBL
Match: A0A1S3CL24 (pentatricopeptide repeat-containing protein At1g77405 OS=Cucumis melo OX=3656 GN=LOC103501662 PE=4 SV=1)

HSP 1 Score: 389 bits (999), Expect = 3.09e-132
Identity = 193/204 (94.61%), Postives = 197/204 (96.57%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           MVQPNTVRL+NHRLVDQILVAML+NRPFDTH+H AASTSTTHQLWSSDSVSDVLRSVPRF
Sbjct: 1   MVQPNTVRLTNHRLVDQILVAMLQNRPFDTHIHPAASTSTTHQLWSSDSVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGP AHRDPFK KLGL+KALEF
Sbjct: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPAAHRDPFKVKLGLSKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVETHF FQHDEITCREMACVLARGN LMGLWDFLKEMSRR NGGLVTTATITCLIKV
Sbjct: 121 FYWVETHFEFQHDEITCREMACVLARGNRLMGLWDFLKEMSRRGNGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGEEGLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEEGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. ExPASy TrEMBL
Match: A0A6J1BPU3 (pentatricopeptide repeat-containing protein At1g77405 OS=Momordica charantia OX=3673 GN=LOC111004642 PE=4 SV=1)

HSP 1 Score: 342 bits (876), Expect = 1.48e-113
Identity = 167/204 (81.86%), Postives = 183/204 (89.71%), Query Frame = 0


Query: 1   MVQPNTVRLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRF 60
           M Q   +R SN RL+DQ+ VAML+NRPFDTH+  + ST +T+QLW+S+SVSDVLRSVPRF
Sbjct: 1   MAQLKMIRFSNSRLIDQVFVAMLQNRPFDTHIDRSTSTFSTNQLWNSESVSDVLRSVPRF 60

Query: 61  FFQSARSIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEF 120
           FFQS RSIG QKGFRHRTPLKQRKLKEEAYKFRNNVLVLGP AHRDP+K +LGLNKALEF
Sbjct: 61  FFQSIRSIGCQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPAAHRDPYKVELGLNKALEF 120

Query: 121 FYWVETHFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKV 180
           FYWVE HFGF H+E+TCREMACVLARGN L GLWDFLKEMS+R NGGLVTTATITCLIKV
Sbjct: 121 FYWVEIHFGFIHNEMTCREMACVLARGNRLPGLWDFLKEMSKRGNGGLVTTATITCLIKV 180

Query: 181 LGEEGLVNEALTAFYRMKQFHSCK 204
           LGE+GLVNEALTAFYRMKQFH CK
Sbjct: 181 LGEQGLVNEALTAFYRMKQFH-CK 203

[Close]

BLAST of Cucsat.G10167 vs. ExPASy TrEMBL
Match: A0A6J1IV84 (pentatricopeptide repeat-containing protein At1g77405 OS=Cucurbita maxima OX=3661 GN=LOC111480274 PE=4 SV=1)

HSP 1 Score: 335 bits (858), Expect = 7.60e-111
Identity = 167/198 (84.34%), Postives = 179/198 (90.40%), Query Frame = 0


Query: 8   RLSNHRLVDQILVAMLKNRPFDTHVHSAASTSTT-HQLWSSDSVSDVLRSVPRFFFQSAR 67
           RL NHRLVDQIL AML+NRPFDTH+H AA+TS+T HQLWSS+SVSDVLRSVPR FFQ+ R
Sbjct: 10  RLRNHRLVDQILAAMLQNRPFDTHIHCAATTSSTRHQLWSSESVSDVLRSVPRLFFQTTR 69

Query: 68  SIGTQKGFRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVET 127
           SIG QKGFRHR PLKQRKLKEEAYKF+NNVLVLGP AHRDP K +LGLNKALEFFYWVET
Sbjct: 70  SIGIQKGFRHRAPLKQRKLKEEAYKFQNNVLVLGPAAHRDPLKVELGLNKALEFFYWVET 129

Query: 128 HFGFQHDEITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGL 187
           HFGFQHDE+TCREMACVLARGN  M LW+F KEMSRR   GL+TTATITCLIKVLGE+GL
Sbjct: 130 HFGFQHDEMTCREMACVLARGNRSMRLWNFFKEMSRR-GSGLITTATITCLIKVLGEQGL 189

Query: 188 VNEALTAFYRMKQFHSCK 204
           VNEALTAFYRMKQFH CK
Sbjct: 190 VNEALTAFYRMKQFH-CK 205

The following BLAST results are available for this feature:

BLAST of Cucsat.G10167 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1PFC5	1.3e-67	62.89	Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana OX...	[more]
Q9LUJ4	1.1e-07	30.43	Pentatricopeptide repeat-containing protein At3g22670, mitochondrial OS=Arabidop...	[more]

BLAST of Cucsat.G10167 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149831.1	2.35e-139	99.51	pentatricopeptide repeat-containing protein At1g77405 [Cucumis sativus] >KGN5125...	[more]
TYK05755.1	5.54e-133	94.61	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_008463528.1	6.39e-132	94.61	PREDICTED: pentatricopeptide repeat-containing protein At1g77405 [Cucumis melo] ...	[more]
XP_038896909.1	3.49e-126	90.69	pentatricopeptide repeat-containing protein At1g77405 [Benincasa hispida]	[more]
XP_022131430.1	3.06e-113	81.86	pentatricopeptide repeat-containing protein At1g77405 [Momordica charantia] >XP_...	[more]

BLAST of Cucsat.G10167 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KS49	1.14e-139	99.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G505180 PE=4 SV=1	[more]
A0A5D3C2Y8	2.68e-133	94.61	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3CL24	3.09e-132	94.61	pentatricopeptide repeat-containing protein At1g77405 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1BPU3	1.48e-113	81.86	pentatricopeptide repeat-containing protein At1g77405 OS=Momordica charantia OX=...	[more]
A0A6J1IV84	7.60e-111	84.34	pentatricopeptide repeat-containing protein At1g77405 OS=Cucurbita maxima OX=366...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (B10) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 109..209 e-value: 9.2E-11 score: 43.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 173..200 e-value: 8.8E-4 score: 17.3
None	No IPR available	PANTHER	PTHR46128:SF255	BNAANNG11840D PROTEIN	coord: 42..204
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 42..204

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsat.G10167.T1	Cucsat.G10167.T1	mRNA
Cucsat.G10167.T3	Cucsat.G10167.T3	mRNA
Cucsat.G10167.T4	Cucsat.G10167.T4	mRNA
Cucsat.G10167.T7	Cucsat.G10167.T7	mRNA
Cucsat.G10167.T9	Cucsat.G10167.T9	mRNA
Cucsat.G10167.T2	Cucsat.G10167.T2	mRNA
Cucsat.G10167.T5	Cucsat.G10167.T5	mRNA
Cucsat.G10167.T8	Cucsat.G10167.T8	mRNA
Cucsat.G10167.T6	Cucsat.G10167.T6	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding