Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTTGAAGACGACTTCAGTTTCCCCACCGCCTTCGACTCCTTCACCCGCTGCAGCATCGATTCCCCGCCTCTCTGGCGCGCCTCTCCCGCCGCATCTCCCATTTCCGATTCCAACTTCAGAGACACCACGGCCCATACTGACAGGACCGATCGCTTCGCCGCCGTCACATTTACGTCCTCCTTGCACAGGAGGAGGAAACTCGAGAGCGACGAGGAGACGGAGGCCGCGGCGGCGGAGAAGATGGATGTGCTCTGGGAGAATCTCAACGAGGACTTATCGAGGAATCGAAGATCGAGGTTGATGAAATCGGCGGAGATTGAATCGGTTGAGATACCGGAATTGGGTCCGTCGGAAACGTCGAGAAGCACCGCGACGAGGAGGAAGAAGACGACGACGGGGATTGTTAAGGTTTTGAAGAAGCTTTTCTTGATGCAGAACACTTCCCGCCGGAATCTGGAAACTCGATCAGCCTGA
mRNA sequence
ATGGCGGTTGAAGACGACTTCAGTTTCCCCACCGCCTTCGACTCCTTCACCCGCTGCAGCATCGATTCCCCGCCTCTCTGGCGCGCCTCTCCCGCCGCATCTCCCATTTCCGATTCCAACTTCAGAGACACCACGGCCCATACTGACAGGACCGATCGCTTCGCCGCCGTCACATTTACGTCCTCCTTGCACAGGAGGAGGAAACTCGAGAGCGACGAGGAGACGGAGGCCGCGGCGGCGGAGAAGATGGATGTGCTCTGGGAGAATCTCAACGAGGACTTATCGAGGAATCGAAGATCGAGGTTGATGAAATCGGCGGAGATTGAATCGGTTGAGATACCGGAATTGGGTCCGTCGGAAACGTCGAGAAGCACCGCGACGAGGAGGAAGAAGACGACGACGGGGATTGTTAAGGTTTTGAAGAAGCTTTTCTTGATGCAGAACACTTCCCGCCGGAATCTGGAAACTCGATCAGCCTGA
Coding sequence (CDS)
ATGGCGGTTGAAGACGACTTCAGTTTCCCCACCGCCTTCGACTCCTTCACCCGCTGCAGCATCGATTCCCCGCCTCTCTGGCGCGCCTCTCCCGCCGCATCTCCCATTTCCGATTCCAACTTCAGAGACACCACGGCCCATACTGACAGGACCGATCGCTTCGCCGCCGTCACATTTACGTCCTCCTTGCACAGGAGGAGGAAACTCGAGAGCGACGAGGAGACGGAGGCCGCGGCGGCGGAGAAGATGGATGTGCTCTGGGAGAATCTCAACGAGGACTTATCGAGGAATCGAAGATCGAGGTTGATGAAATCGGCGGAGATTGAATCGGTTGAGATACCGGAATTGGGTCCGTCGGAAACGTCGAGAAGCACCGCGACGAGGAGGAAGAAGACGACGACGGGGATTGTTAAGGTTTTGAAGAAGCTTTTCTTGATGCAGAACACTTCCCGCCGGAATCTGGAAACTCGATCAGCCTGA
Protein sequence
MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFTSSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA
Homology
BLAST of Csor.00g309590 vs. NCBI nr
Match:
KAG6607589.1 (hypothetical protein SDJN03_00931, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 303 bits (777), Expect = 1.08e-103
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT
Sbjct: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE
Sbjct: 61 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
Query: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA
Sbjct: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
BLAST of Csor.00g309590 vs. NCBI nr
Match:
KAG7037212.1 (hypothetical protein SDJN02_00835, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 302 bits (774), Expect = 3.09e-103
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT
Sbjct: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
SSLHRRRKLE+DEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE
Sbjct: 61 SSLHRRRKLETDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
Query: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA
Sbjct: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
BLAST of Csor.00g309590 vs. NCBI nr
Match:
XP_022932064.1 (uncharacterized protein LOC111438391 [Cucurbita moschata])
HSP 1 Score: 294 bits (753), Expect = 4.93e-100
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT
Sbjct: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
SSLHRRRKLESDEET+AAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEI +L PS+
Sbjct: 61 SSLHRRRKLESDEETDAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIADLDPSQ 120
Query: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA
Sbjct: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
BLAST of Csor.00g309590 vs. NCBI nr
Match:
XP_023521937.1 (uncharacterized protein LOC111785778 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 292 bits (747), Expect = 4.05e-99
Identity = 153/159 (96.23%), Postives = 155/159 (97.48%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDFSFPT FDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT
Sbjct: 1 MAVEDDFSFPTVFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
SSLHRRR+L SDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPEL PSE
Sbjct: 61 SSLHRRRRLGSDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELDPSE 120
Query: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
SRSTATRRKKTTTGIVKVLKKLFL+QNTSRRNLETRSA
Sbjct: 121 KSRSTATRRKKTTTGIVKVLKKLFLLQNTSRRNLETRSA 159
BLAST of Csor.00g309590 vs. NCBI nr
Match:
XP_022972924.1 (uncharacterized protein LOC111471431 [Cucurbita maxima])
HSP 1 Score: 270 bits (689), Expect = 4.70e-90
Identity = 147/162 (90.74%), Postives = 150/162 (92.59%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDF+FPTAFDSFTRCSIDSPPLWR SPAASPISDSNFRDTTAHT+R DRFA VTFT
Sbjct: 1 MAVEDDFTFPTAFDSFTRCSIDSPPLWRVSPAASPISDSNFRDTTAHTERADRFATVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAA----EKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPEL 120
SSL RRR LESDEE EAAAA EKMDVLWENLNEDLSRNRRSRLMKSAEIESVEI EL
Sbjct: 61 SSLQRRR-LESDEEEEAAAAAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIAEL 120
Query: 121 GPSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRS 158
PSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSR+NLETRS
Sbjct: 121 NPSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSRQNLETRS 161
BLAST of Csor.00g309590 vs. ExPASy TrEMBL
Match:
A0A6J1EVZ5 (uncharacterized protein LOC111438391 OS=Cucurbita moschata OX=3662 GN=LOC111438391 PE=4 SV=1)
HSP 1 Score: 294 bits (753), Expect = 2.39e-100
Identity = 154/159 (96.86%), Postives = 157/159 (98.74%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT
Sbjct: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 120
SSLHRRRKLESDEET+AAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEI +L PS+
Sbjct: 61 SSLHRRRKLESDEETDAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIADLDPSQ 120
Query: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA
Sbjct: 121 TSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRSA 159
BLAST of Csor.00g309590 vs. ExPASy TrEMBL
Match:
A0A6J1ID03 (uncharacterized protein LOC111471431 OS=Cucurbita maxima OX=3661 GN=LOC111471431 PE=4 SV=1)
HSP 1 Score: 270 bits (689), Expect = 2.27e-90
Identity = 147/162 (90.74%), Postives = 150/162 (92.59%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPISDSNFRDTTAHTDRTDRFAAVTFT 60
MAVEDDF+FPTAFDSFTRCSIDSPPLWR SPAASPISDSNFRDTTAHT+R DRFA VTFT
Sbjct: 1 MAVEDDFTFPTAFDSFTRCSIDSPPLWRVSPAASPISDSNFRDTTAHTERADRFATVTFT 60
Query: 61 SSLHRRRKLESDEETEAAAA----EKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPEL 120
SSL RRR LESDEE EAAAA EKMDVLWENLNEDLSRNRRSRLMKSAEIESVEI EL
Sbjct: 61 SSLQRRR-LESDEEEEAAAAAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIAEL 120
Query: 121 GPSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSRRNLETRS 158
PSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSR+NLETRS
Sbjct: 121 NPSETSRSTATRRKKTTTGIVKVLKKLFLMQNTSRQNLETRS 161
BLAST of Csor.00g309590 vs. ExPASy TrEMBL
Match:
A0A6J1EX19 (uncharacterized protein LOC111439032 OS=Cucurbita moschata OX=3662 GN=LOC111439032 PE=4 SV=1)
HSP 1 Score: 174 bits (441), Expect = 1.32e-52
Identity = 105/179 (58.66%), Postives = 124/179 (69.27%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPIS-------DSNFRDTTAHTDRTDR 60
MAVEDDFSFPTA + ++RC IDSPPLWR SP ASPIS + +FRD ++DR
Sbjct: 1 MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPTASPISYRQKTASNRSFRDD----QKSDR 60
Query: 61 FAAVTFTSSLHRRRKLESD------EETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAE 120
FA+V F++SL RRR+ SD EE E AAEKMDVLWEN NE+LSR+ RSRLMK+AE
Sbjct: 61 FASVRFSASLQRRRRFSSDAAMDGEEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAE 120
Query: 121 IESVEI-------PELGPSETSRSTATRRKKT-TTGIVKVLKKLFLMQNTSRRNLETRS 158
+E +EI EL SETS + ATRRK T T VK LKKLFL+ N SRRNL+TRS
Sbjct: 121 MEEIEIVKARRRMAELNLSETSSAVATRRKATGKTAFVKALKKLFLLHNKSRRNLQTRS 175
BLAST of Csor.00g309590 vs. ExPASy TrEMBL
Match:
A0A6J1INL4 (uncharacterized protein LOC111477161 OS=Cucurbita maxima OX=3661 GN=LOC111477161 PE=4 SV=1)
HSP 1 Score: 173 bits (439), Expect = 2.58e-52
Identity = 105/178 (58.99%), Postives = 124/178 (69.66%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPIS-------DSNFRDTTAHTDRTDR 60
MAVEDDFSFPTA + ++RC IDSPPLWR SPAASPIS + +FRD ++D
Sbjct: 1 MAVEDDFSFPTALEPYSRCGIDSPPLWRLSPAASPISYRQRTASNRSFRDD----QKSDG 60
Query: 61 FAAVTFTSSLHRRRKLESD-----EETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEI 120
FA+V F++SL RRR+ SD EE E AAEKMDVLWEN NE+LSR+ RSRLMK+AE+
Sbjct: 61 FASVRFSASLQRRRRFSSDAAMDGEEEEEVAAEKMDVLWENFNEELSRSGRSRLMKTAEM 120
Query: 121 ESVEI-------PELGPSETSRSTATRRKKT-TTGIVKVLKKLFLMQNTSRRNLETRS 158
E +EI EL SETS + ATRRK T T VK LKKLFL+ N SRRNL+TRS
Sbjct: 121 EEIEIVKTRRRMTELNLSETSGAVATRRKATGKTAFVKALKKLFLLHNNSRRNLQTRS 174
BLAST of Csor.00g309590 vs. ExPASy TrEMBL
Match:
A0A5A7V6B2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00190 PE=4 SV=1)
HSP 1 Score: 167 bits (424), Expect = 5.35e-50
Identity = 105/181 (58.01%), Postives = 121/181 (66.85%), Query Frame = 0
Query: 1 MAVEDDFSFPTAFDSFTRCSIDSPPLWRASPAASPIS-------DSNFRDTTAHTDRTDR 60
MAVEDDFSFPTA + F RC IDSPPLWR SP+ASPIS D NFRDT + + ++R
Sbjct: 1 MAVEDDFSFPTALEPFNRCGIDSPPLWRLSPSASPISYRQQISCDRNFRDTASDGEISNR 60
Query: 61 FAAVTFTSSLHRRRKLESD--------EETEAAAAEKMDVLWENLNEDLSRNRRSRLMKS 120
F + +F RRR+ SD EE E A AEKMDVLWEN NE+LSR+RRSRLMK+
Sbjct: 61 FPSASF----QRRRRFLSDAAVNGEEEEEEEEAVAEKMDVLWENFNEELSRSRRSRLMKT 120
Query: 121 AEIESVEI-------PELGPSETSRSTATRRKKT-TTGIVKVLKKLFLMQNTSRRNLETR 158
AE+E EI EL ETS + ATRRK T T VKVLKKLFLM + SRRNL+TR
Sbjct: 121 AELEENEIVKARQRMAELNLPETSGAMATRRKATGKTAFVKVLKKLFLMHSNSRRNLQTR 177
BLAST of Csor.00g309590 vs. TAIR 10
Match:
AT1G71910.1 (unknown protein; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 45.1 bits (105), Expect = 6.3e-05
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 5 DDFSFPT--AFDSFTRCSIDSPPLWRASPAAS-PISDSNFRDTTAHTDRT-DRFAAVTFT 64
++F+FP+ + DS +DSPPLW+ SP S D +F + D +F+
Sbjct: 9 EEFTFPSLASHDSSHHSGLDSPPLWKHSPVTSFRRKDYDFGLARLVIGKDGDHDQRKSFS 68
Query: 65 SSLHRRRKLESDEETEAAAAEKMDVLWENLNEDLSRNRRSRLMKSAEIESVEIPELGPSE 124
R R ++ EE EKMD+LWE+LNE+L +S + + L P E
Sbjct: 69 YVEMRSRWIDDKEE------EKMDMLWEDLNEELPPRSQSLRIVHGGDGGEKKTALFPDE 128
Query: 125 TS--------RSTATRRKKTTTGI---VKVLKKLFLMQNTSRRN 154
+S + + +KKT + ++VLKKL +++++S+R+
Sbjct: 129 SSAVAVGCGMKLSKKTKKKTNLNVLVLMRVLKKLIVLRSSSQRS 166
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6607589.1 | 1.08e-103 | 100.00 | hypothetical protein SDJN03_00931, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7037212.1 | 3.09e-103 | 99.37 | hypothetical protein SDJN02_00835, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022932064.1 | 4.93e-100 | 96.86 | uncharacterized protein LOC111438391 [Cucurbita moschata] | [more] |
XP_023521937.1 | 4.05e-99 | 96.23 | uncharacterized protein LOC111785778 [Cucurbita pepo subsp. pepo] | [more] |
XP_022972924.1 | 4.70e-90 | 90.74 | uncharacterized protein LOC111471431 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1EVZ5 | 2.39e-100 | 96.86 | uncharacterized protein LOC111438391 OS=Cucurbita moschata OX=3662 GN=LOC1114383... | [more] |
A0A6J1ID03 | 2.27e-90 | 90.74 | uncharacterized protein LOC111471431 OS=Cucurbita maxima OX=3661 GN=LOC111471431... | [more] |
A0A6J1EX19 | 1.32e-52 | 58.66 | uncharacterized protein LOC111439032 OS=Cucurbita moschata OX=3662 GN=LOC1114390... | [more] |
A0A6J1INL4 | 2.58e-52 | 58.99 | uncharacterized protein LOC111477161 OS=Cucurbita maxima OX=3661 GN=LOC111477161... | [more] |
A0A5A7V6B2 | 5.35e-50 | 58.01 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT1G71910.1 | 6.3e-05 | 29.27 | unknown protein; Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bac... | [more] |