Csor.00g303260 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g303260
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	importin-9
Location	Csor_Chr18: 11690863 .. 11691383 (-)
RNA-Seq Expression	Csor.00g303260
Synteny	Csor.00g303260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAATGTGATTGATCAAGATCAACAGTGGCTTCTCAATTGCTTGTCCGCCACTCTTGACCCCAACCAGGAGGTTCGCTCATTCGCTGAAACCTCGCTAAATCAGGCATCTCTCCAACCAGGTTCTTGCCGTCACCGTAATTCTCAGCTAATTGTTATCTGTACTATCGAGTGTCTTCCCATATGGAATCATTTTTCTATGTTACCCGAACAGTAAATGAATCGCATTCCCGCCTCGTTGGCGTGGATATGCGATTGTGTTAGGCAGGATTGATATGTCATATACATACGTTTCTGTACTGTAGGAAGATCAGGAACAGATTAAGTTTTCTGGTTCGTTCTGTCTTTCACTATCTGATTAACTTATTCTACTACTGGATTTAATTGTGATACTTCATTCATCTTAAAGGTTTTGGGGTTGCATTATCCAAAGTCACTGCGAACAGGGAGCTGCCAGTAGGATTGCGCCAGATATCCTTTGTTGTCGTTGCAATTGAGATTCTTAATTTTTCTGCGTGA

mRNA sequence

ATGGCCAATGTGATTGATCAAGATCAACAGTGGCTTCTCAATTGCTTGTCCGCCACTCTTGACCCCAACCAGGAGGTTCGCTCATTCGCTGAAACCTCGCTAAATCAGGCATCTCTCCAACCAGGTTTTGGGGTTGCATTATCCAAAGTCACTGCGAACAGGGAGCTGCCAGTAGGATTGCGCCAGATATCCTTTGTTGTCGTTGCAATTGAGATTCTTAATTTTTCTGCGTGA

Coding sequence (CDS)

ATGGCCAATGTGATTGATCAAGATCAACAGTGGCTTCTCAATTGCTTGTCCGCCACTCTTGACCCCAACCAGGAGGTTCGCTCATTCGCTGAAACCTCGCTAAATCAGGCATCTCTCCAACCAGGTTTTGGGGTTGCATTATCCAAAGTCACTGCGAACAGGGAGCTGCCAGTAGGATTGCGCCAGATATCCTTTGTTGTCGTTGCAATTGAGATTCTTAATTTTTCTGCGTGA

Protein sequence

MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGLRQISFVVVAIEILNFSA

Homology

[Close]

BLAST of Csor.00g303260 vs. NCBI nr
Match: KAG6574009.1 (hypothetical protein SDJN03_27896, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150 bits (378), Expect = 1.89e-45
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL
Sbjct: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60

Query: 61 RQISFVVVAIEILNFSA 77
          RQISFVVVAIEILNFSA
Sbjct: 61 RQISFVVVAIEILNFSA 77

[Close]

BLAST of Csor.00g303260 vs. NCBI nr
Match: KAG6601339.1 (Importin-9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133 bits (334), Expect = 5.72e-34
Identity = 68/76 (89.47%), Postives = 70/76 (92.11%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWL+N LSATLDPN EVRSFAE SLNQASLQPGFGVALSKV ANRELPVGL
Sbjct: 1  MANVIDQDQQWLINALSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGL 60

Query: 61 RQISFVVVAIEILNFS 76
          RQISFVV AI+IL FS
Sbjct: 61 RQISFVVTAIKILRFS 76

[Close]

BLAST of Csor.00g303260 vs. NCBI nr
Match: KAF3950435.1 (hypothetical protein CMV_023812, partial [Castanea mollissima])

HSP 1 Score: 117 bits (294), Expect = 1.96e-32
Identity = 58/66 (87.88%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWLLNCLSATLDPN EVRSFAE SLNQASLQPGFG ALSKV ANRELP+GL
Sbjct: 1  MANVIDQDQQWLLNCLSATLDPNHEVRSFAEASLNQASLQPGFGSALSKVAANRELPLGL 60

Query: 61 RQISFV 66
          RQ++ V
Sbjct: 61 RQLAAV 66

[Close]

BLAST of Csor.00g303260 vs. NCBI nr
Match: TYK09061.1 (importin-9 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 126 bits (317), Expect = 1.13e-31
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPGFGVALSKV ANRELPVGL
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGL 60

Query: 61 RQISFVVVAIE 71
          RQISFV+  + 
Sbjct: 61 RQISFVIAVLN 71

[Close]

BLAST of Csor.00g303260 vs. NCBI nr
Match: KAG7032125.1 (Importin-9, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 121 bits (303), Expect = 3.92e-31
Identity = 69/101 (68.32%), Postives = 71/101 (70.30%), Query Frame = 0


Query: 1   MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPG------------------ 60
           MANVIDQDQQWL+N LSATLDPN EVRSFAE SLNQASLQPG                  
Sbjct: 1   MANVIDQDQQWLINALSATLDPNHEVRSFAEASLNQASLQPGSCFRYNSQLTVLPIDFRL 60

Query: 61  ------FGVALSKVTANRELPVGLRQISFVVVAIEILNFSA 77
                 FGVALSKV ANRELPVGLRQISFVV AI+IL FSA
Sbjct: 61  FSCTIGFGVALSKVAANRELPVGLRQISFVVTAIKILRFSA 101

[Close]

BLAST of Csor.00g303260 vs. ExPASy TrEMBL
Match: A0A5D3CB26 (Importin-9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00500 PE=4 SV=1)

HSP 1 Score: 126 bits (317), Expect = 5.45e-32
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPGFGVALSKV ANRELPVGL
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGL 60

Query: 61 RQISFVVVAIE 71
          RQISFV+  + 
Sbjct: 61 RQISFVIAVLN 71

[Close]

BLAST of Csor.00g303260 vs. ExPASy TrEMBL
Match: A0A1S3BFX2 (importin-9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 7.85e-30
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPGFGVALSKV ANRELPVGL
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGL 60

Query: 61 RQISFV 66
          RQ++ V
Sbjct: 61 RQLAAV 66

[Close]

BLAST of Csor.00g303260 vs. ExPASy TrEMBL
Match: A0A0A0KQZ8 (Importin N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G608130 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 7.88e-30
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPGFGVALSKV ANRELPVGL
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGL 60

Query: 61 RQISFV 66
          RQ++ V
Sbjct: 61 RQLAAV 66

[Close]

BLAST of Csor.00g303260 vs. ExPASy TrEMBL
Match: A0A1S3BF85 (importin-9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1)

HSP 1 Score: 120 bits (301), Expect = 7.88e-30
Identity = 59/66 (89.39%), Postives = 62/66 (93.94%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWL+NCLSATLDPN EVRSFAE SLNQASLQPGFGVALSKV ANRELPVGL
Sbjct: 1  MANVIDQDQQWLINCLSATLDPNHEVRSFAEASLNQASLQPGFGVALSKVAANRELPVGL 60

Query: 61 RQISFV 66
          RQ++ V
Sbjct: 61 RQLAAV 66

[Close]

BLAST of Csor.00g303260 vs. ExPASy TrEMBL
Match: A0A6J1D5R8 (importin-9 OS=Momordica charantia OX=3673 GN=LOC111017537 PE=4 SV=1)

HSP 1 Score: 120 bits (300), Expect = 1.08e-29
Identity = 58/66 (87.88%), Postives = 63/66 (95.45%), Query Frame = 0


Query: 1  MANVIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGL 60
          MANVIDQDQQWLLNCLSATLDPN EVRS+AE SLNQASLQPGFGVALSK++ANRELPVGL
Sbjct: 1  MANVIDQDQQWLLNCLSATLDPNHEVRSYAEASLNQASLQPGFGVALSKISANRELPVGL 60

Query: 61 RQISFV 66
          RQ++ V
Sbjct: 61 RQLAAV 66

[Close]

BLAST of Csor.00g303260 vs. TAIR 10
Match: AT1G26170.1 (ARM repeat superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 3.6e-22
Identity = 48/65 (73.85%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 4  VIDQDQQWLLNCLSATLDPNQEVRSFAETSLNQASLQPGFGVALSKVTANRELPVGLRQI 63
          V+DQDQQWLL CLSA+LDPNQ VRSFAETSLNQASLQPGFG AL +V AN++L +GLRQ+
Sbjct: 2  VVDQDQQWLLGCLSASLDPNQNVRSFAETSLNQASLQPGFGSALCRVAANKDLSLGLRQL 61

Query: 64 SFVVV 69
          + V++
Sbjct: 62 AAVLL 66

The following BLAST results are available for this feature:

BLAST of Csor.00g303260 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g303260 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6574009.1	1.89e-45	100.00	hypothetical protein SDJN03_27896, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6601339.1	5.72e-34	89.47	Importin-9, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAF3950435.1	1.96e-32	87.88	hypothetical protein CMV_023812, partial [Castanea mollissima]	[more]
TYK09061.1	1.13e-31	87.32	importin-9 isoform X1 [Cucumis melo var. makuwa]	[more]
KAG7032125.1	3.92e-31	68.32	Importin-9, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Csor.00g303260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CB26	5.45e-32	87.32	Importin-9 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold47...	[more]
A0A1S3BFX2	7.85e-30	89.39	importin-9 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1	[more]
A0A0A0KQZ8	7.88e-30	89.39	Importin N-terminal domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]
A0A1S3BF85	7.88e-30	89.39	importin-9 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489226 PE=4 SV=1	[more]
A0A6J1D5R8	1.08e-29	87.88	importin-9 OS=Momordica charantia OX=3673 GN=LOC111017537 PE=4 SV=1	[more]

BLAST of Csor.00g303260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26170.1	3.6e-22	73.85	ARM repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001494	Importin-beta, N-terminal domain	PFAM	PF03810	IBN_N	coord: 30..66 e-value: 8.0E-6 score: 25.7
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 6..73 e-value: 5.6E-13 score: 50.6
None	No IPR available	PANTHER	PTHR10997	IMPORTIN-7, 8, 11	coord: 6..65
None	No IPR available	PANTHER	PTHR10997:SF9	IMPORTIN-9	coord: 6..65
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 7..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g303260.m01	Csor.00g303260.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005635	nuclear envelope
molecular_function	GO:0031267	small GTPase binding