Csor.00g302760 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g302760
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionRibulose bisphosphate carboxylase small subunit
LocationCsor_Chr18: 11383006 .. 11383945 (-)
RNA-Seq ExpressionCsor.00g302760
SyntenyCsor.00g302760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCATTGTCTCCTCCGCCGCCGCTGTCGCCTCCGTGAACAGGGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCCTACACTGGGCTGAAATCCACCGCCGGCTTCCCTGTCACCCGGAAGAACAACGACATCACCACTCTTGCTAGCAATGGTAGCAGAGTTCGGTGCATGAAGGTATTAAACCATTCAATTCGTTTGTTAAAATTATGGGTTGTTCTTAATTTTTTGTGGGTTTGTTTGTAAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCTTACCTGCCTGATCTTACCAGTGAACAATTGTTGAAGGAAATTGGGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAGTTGGAGGTTAGTCTATTAAGAATCACGACTCCCCACAATGGTATGCTATATAGAAAATCTCCCTCGAACAAAGTATACCATAAAGCCTCTTCTGAGGTCTATTAAGCTCTCGAACAGCCTCCTCTTAATTGAGGCTAGACTACTTTCTCACGACCCTTTACACCATTTGTTCGACATTTGATGATTCTATTAACATGGTTAAATTAAAAGCATAATTCTGATACCAGACATGACATTGGTGGCTTGGTTTTTGGCTAACAAGAATTGAGATGTATTACTTGCTTATAAACTCACGATCATATCTGAACTGGGTTTGGATAATTTTGCAGAAGGGATTTGTGTACCGTGAGAACCACAGGTCGCCGGGATACTACGACGGACGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACAGACCCAGCTCAGGTGGCGGCTGAGATCGAGGAGGCCAAGAAGGAGTACCCCAACGCATTCATCAGGGTCATTGGGTTTGACAATGTCCGCCAAGTGCAGTGCATCAGTTTCATTGTCTACAAGCCTGCATCCTACTAA

mRNA sequence

ATGGCTTCCATTGTCTCCTCCGCCGCCGCTGTCGCCTCCGTGAACAGGGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCCTACACTGGGCTGAAATCCACCGCCGGCTTCCCTGTCACCCGGAAGAACAACGACATCACCACTCTTGCTAGCAATGGTAGCAGAGTTCGGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCTTACCTGCCTGATCTTACCAGTGAACAATTGTTGAAGGAAATTGGGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAGTTGGAGAAGGGATTTGTGTACCGTGAGAACCACAGGTCGCCGGGATACTACGACGGACGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACAGACCCAGCTCAGGTGGCGGCTGAGATCGAGGAGGCCAAGAAGGAGTACCCCAACGCATTCATCAGGGTCATTGGGTTTGACAATGTCCGCCAAGTGCAGTGCATCAGTTTCATTGTCTACAAGCCTGCATCCTACTAA

Coding sequence (CDS)

ATGGCTTCCATTGTCTCCTCCGCCGCCGCTGTCGCCTCCGTGAACAGGGCTTCCCCTGCTCAAGCTAGCATGGTAGCACCCTACACTGGGCTGAAATCCACCGCCGGCTTCCCTGTCACCCGGAAGAACAACGACATCACCACTCTTGCTAGCAATGGTAGCAGAGTTCGGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTCTGTCTTACCTGCCTGATCTTACCAGTGAACAATTGTTGAAGGAAATTGGGTACCTTCTCCGCTCTGGCTGGGTTCCCTGCATCGAGTTCGAGTTGGAGAAGGGATTTGTGTACCGTGAGAACCACAGGTCGCCGGGATACTACGACGGACGGTACTGGACCATGTGGAAGCTGCCCATGTTCGGGTGCACAGACCCAGCTCAGGTGGCGGCTGAGATCGAGGAGGCCAAGAAGGAGTACCCCAACGCATTCATCAGGGTCATTGGGTTTGACAATGTCCGCCAAGTGCAGTGCATCAGTTTCATTGTCTACAAGCCTGCATCCTACTAA

Protein sequence

MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMKVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPASY
Homology
[Close]
BLAST of Csor.00g302760 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 4.9e-83
Identity = 146/179 (81.56%), Postives = 164/179 (91.62%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN-DITTLASNGSRVRCM 60
           MAS + S+AAVASVN ASPAQASMVAP+TGLKS+AGFP+TRKNN DITTLASN  +V+CM
Sbjct: 1   MASSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPPLGL+KFETLSYLPD+++EQL KE  YLLR+GWVPC+EF++  GFVYRENHRSPG+
Sbjct: 61  KVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGF 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 179
           YDGRYWTMWKLPMFGCTD +QV  EIEEAKKEYP+AFIRVIGFDNVRQVQCISFI YKP
Sbjct: 121 YDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

[Close]
BLAST of Csor.00g302760 vs. ExPASy Swiss-Prot
Match: P16032 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 OS=Mesembryanthemum crystallinum OX=3544 GN=RBCS1 PE=2 SV=2)

HSP 1 Score: 293.9 bits (751), Expect = 1.2e-78
Identity = 138/181 (76.24%), Postives = 159/181 (87.85%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS + S+AAVA+VNR +PAQASMVAP+ GLKS A FPVT+KNNDIT++A+NG RV+CM+
Sbjct: 1   MASSMVSSAAVATVNR-TPAQASMVAPFNGLKSVAAFPVTKKNNDITSVATNGGRVQCMQ 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLG KKFETLSYLP L+ E L+KE+ YLL +GWVPC+EFE   GFVYRE+  +PGYY
Sbjct: 61  VWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDP+QV AE+EEAKK YP AFIR+IGFDNVRQVQCISFI YKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKPAS 180

Query: 181 Y 182
           Y
Sbjct: 181 Y 180

[Close]
BLAST of Csor.00g302760 vs. ExPASy Swiss-Prot
Match: P24007 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifolia OX=3767 GN=RBCS PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.7e-78
Identity = 137/183 (74.86%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MASIVSSAAAVASV--NRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRC 60
           MAS + S+  VA+V  +R +PAQA MVAP+ GLKS++ FPVTRK+NDIT++ASNG RV+C
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP L+SE L KE+ YLLR  WVPC+EFELE GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD +QV  E+EEAKK YP +FIR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
           A +
Sbjct: 181 AGF 183

[Close]
BLAST of Csor.00g302760 vs. ExPASy Swiss-Prot
Match: P32764 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tuberosum OX=4113 GN=RBCS6 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 6.2e-78
Identity = 138/183 (75.41%), Postives = 160/183 (87.43%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNN--DITTLASNGSRVRC 60
           MAS + S+AAVA+  R++ AQASMVAP+TGLKS A FPVT+KNN  DIT+LASNG RVRC
Sbjct: 1   MASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPP+ +KK+ETLSYLPDL+ EQLLKE+ YLL++GWVPC+EFE E GFVYRENH+SPG
Sbjct: 61  MQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD  QV AE++EAKK YP A+IR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
             Y
Sbjct: 181 EGY 181

[Close]
BLAST of Csor.00g302760 vs. ExPASy Swiss-Prot
Match: Q02980 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3751 GN=RBCS PE=2 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 2.4e-77
Identity = 136/183 (74.32%), Postives = 158/183 (86.34%), Query Frame = 0 

Query: 1   MASIVSSAAAVASV--NRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRC 60
           MAS + S+  VA+V  +R +PAQA MVAP+TGLKS++  PVTRK+NDIT++ASNG RV+C
Sbjct: 1   MASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSNDITSIASNGGRVQC 60

Query: 61  MKVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPG 120
           M+VWPPLGLKKFETLSYLP L++E L KE+ YLLR  WVPC+EFELE GFVYRENHRSPG
Sbjct: 61  MQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPG 120

Query: 121 YYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 180
           YYDGRYWTMWKLPMFGCTD +QV  E+EEAKK YP +FIR+IGFDNVRQVQCISFI YKP
Sbjct: 121 YYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

Query: 181 ASY 182
           A +
Sbjct: 181 AGF 183

[Close]
BLAST of Csor.00g302760 vs. NCBI nr
Match: XP_022945823.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6573959.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 367 bits (941), Expect = 5.59e-128
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Csor.00g302760 vs. NCBI nr
Match: XP_023542956.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 363 bits (931), Expect = 1.87e-126
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Csor.00g302760 vs. NCBI nr
Match: XP_022968444.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 359 bits (922), Expect = 4.42e-125
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPES 180

[Close]
BLAST of Csor.00g302760 vs. NCBI nr
Match: XP_023513414.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023513481.1 ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 352 bits (903), Expect = 3.49e-122
Identity = 172/181 (95.03%), Postives = 176/181 (97.24%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTAGFPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAGFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLT EQLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTGEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Csor.00g302760 vs. NCBI nr
Match: XP_022957356.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6601287.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032075.1 Ribulose bisphosphate carboxylase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 349 bits (896), Expect = 4.08e-121
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTA FPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLTSEQLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPS 180

[Close]
BLAST of Csor.00g302760 vs. ExPASy TrEMBL
Match: A0A6J1G227 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111449952 PE=3 SV=1)

HSP 1 Score: 367 bits (941), Expect = 2.71e-128
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180

[Close]
BLAST of Csor.00g302760 vs. ExPASy TrEMBL
Match: A0A6J1HZN6 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=LOC111467689 PE=3 SV=1)

HSP 1 Score: 359 bits (922), Expect = 2.14e-125
Identity = 177/181 (97.79%), Postives = 178/181 (98.34%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPES 180

[Close]
BLAST of Csor.00g302760 vs. ExPASy TrEMBL
Match: A0A6J1GZ01 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111458779 PE=3 SV=1)

HSP 1 Score: 349 bits (896), Expect = 1.97e-121
Identity = 171/181 (94.48%), Postives = 175/181 (96.69%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTA FPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDLTSEQLLKEI YLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP S
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPPS 180

[Close]
BLAST of Csor.00g302760 vs. ExPASy TrEMBL
Match: A0A6J1JHU0 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=LOC111484459 PE=3 SV=1)

HSP 1 Score: 347 bits (890), Expect = 1.62e-120
Identity = 169/181 (93.37%), Postives = 175/181 (96.69%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60
           MAS + S+AAVASVNRASPAQASMVAP+ GLKSTA FPVTRKNNDITTLASNGSRV+CMK
Sbjct: 1   MASSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+  QLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLSDAQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 180
           DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA+
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAT 180

[Close]
BLAST of Csor.00g302760 vs. ExPASy TrEMBL
Match: A0A6J1D9J4 (Ribulose bisphosphate carboxylase small subunit OS=Momordica charantia OX=3673 GN=LOC111018606 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 5.33e-108
Identity = 153/179 (85.47%), Postives = 165/179 (92.18%), Query Frame = 0 

Query: 3   SIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMKVW 62
           SIVSSAA VASVNRASPAQASMVAP+TGLKS A FPVTRK NDITTLA+NG RV+CMKVW
Sbjct: 5   SIVSSAA-VASVNRASPAQASMVAPFTGLKSAAAFPVTRKTNDITTLANNGGRVQCMKVW 64

Query: 63  PPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122
           PPLG KKFETLSYLPD+T  QLLKEI YL+RSGW+PCIEFELE GFVYRE+H+SPGYYDG
Sbjct: 65  PPLGKKKFETLSYLPDMTETQLLKEIDYLIRSGWIPCIEFELEHGFVYREHHKSPGYYDG 124

Query: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPASY 181
           RYWTMWKLPM+GCTD +QV  EIEEAKKEYP+AFIRVIGFDN RQVQCISFIVYKP+SY
Sbjct: 125 RYWTMWKLPMYGCTDASQVVKEIEEAKKEYPSAFIRVIGFDNKRQVQCISFIVYKPSSY 182

[Close]
BLAST of Csor.00g302760 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 280.0 bits (715), Expect = 1.3e-75
Identity = 133/182 (73.08%), Postives = 153/182 (84.07%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+AAV +    SPAQA+MVAP+TGLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDLT  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Csor.00g302760 vs. TAIR 10
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A )

HSP 1 Score: 278.1 bits (710), Expect = 5.0e-75
Identity = 130/181 (71.82%), Postives = 151/181 (83.43%), Query Frame = 0 

Query: 2   ASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCMK 61
           +S++SSA  V     ASPAQA+MVAP+ GLKS+A FP TRK NNDIT++ SNG RV CM+
Sbjct: 3   SSMLSSATMV-----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQ 62

Query: 62  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 121
           VWPP+G KKFETLSYLPDLT  +L KE+ YL+R+ W+PC+EFELE GFVYRE+  SPGYY
Sbjct: 63  VWPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYY 122

Query: 122 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPAS 181
           DGRYWTMWKLP+FGCTD AQV  E+EE KKEYPNAFIR+IGFDN RQVQCISFI YKP S
Sbjct: 123 DGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPPS 178

[Close]
BLAST of Csor.00g302760 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 277.7 bits (709), Expect = 6.6e-75
Identity = 132/182 (72.53%), Postives = 153/182 (84.07%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+AAV +    SPAQA+MVAP+TGLKS+A FPVTRK N DIT++ASNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Csor.00g302760 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-74
Identity = 131/182 (71.98%), Postives = 152/182 (83.52%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+ AV +    SPAQA+MVAP+TGLKS+A FPVTRK NNDIT++ SNG RV CM
Sbjct: 1   MASSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGY 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE GFVYRE+  +PGY
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGY 120

Query: 121 YDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPA 180
           YDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI YKP 
Sbjct: 121 YDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 178

Query: 181 SY 182
           S+
Sbjct: 181 SF 178

[Close]
BLAST of Csor.00g302760 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 271.6 bits (693), Expect = 4.7e-73
Identity = 132/187 (70.59%), Postives = 153/187 (81.82%), Query Frame = 0 

Query: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRK-NNDITTLASNGSRVRCM 60
           MAS + S+AAV +    SPAQA+MVAP+TGLKS+A FPVTRK N DIT++ASNG RV CM
Sbjct: 1   MASSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCM 60

Query: 61  KVWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELE-----KGFVYRENH 120
           KVWPP+G KKFETLSYLPDL+  +L KE+ YLLR+ W+PC+EFELE      GFVYRE+ 
Sbjct: 61  KVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHG 120

Query: 121 RSPGYYDGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFI 180
            +PGYYDGRYWTMWKLP+FGCTD AQV  E+EE KKEYP AFIR+IGFDN RQVQCISFI
Sbjct: 121 NTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFI 180

Query: 181 VYKPASY 182
            YKP S+
Sbjct: 181 AYKPPSF 183

The following BLAST results are available for this feature:
BLAST of Csor.00g302760 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P084744.9e-8381.56Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu... [more]
P160321.2e-7876.24Ribulose bisphosphate carboxylase small subunit, chloroplastic 1 OS=Mesembryanth... [more]
P240074.7e-7874.86Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifoli... [more]
P327646.2e-7875.41Ribulose bisphosphate carboxylase small subunit, chloroplastic 6 OS=Solanum tube... [more]
Q029802.4e-7774.32Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3... [more]
BLAST of Csor.00g302760 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022945823.15.59e-128100.00ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos... [more]
XP_023542956.11.87e-12698.90ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep... [more]
XP_022968444.14.42e-12597.79ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita max... [more]
XP_023513414.13.49e-12295.03ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita pep... [more]
XP_022957356.14.08e-12194.48ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos... [more]
BLAST of Csor.00g302760 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1G2272.71e-128100.00Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1HZN62.14e-12597.79Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1GZ011.97e-12194.48Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1JHU01.62e-12093.37Ribulose bisphosphate carboxylase small subunit OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1D9J45.33e-10885.47Ribulose bisphosphate carboxylase small subunit OS=Momordica charantia OX=3673 G... [more]
BLAST of Csor.00g302760 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G38430.11.3e-7573.08Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT1G67090.15.0e-7571.82ribulose bisphosphate carboxylase small chain 1A [more]
AT5G38410.16.6e-7572.53Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38420.11.1e-7471.98Ribulose bisphosphate carboxylase (small chain) family protein [more]
AT5G38410.34.7e-7370.59Ribulose bisphosphate carboxylase (small chain) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024681Ribulose bisphosphate carboxylase, small subunitPRINTSPR00152RUBISCOSMALLcoord: 21..38
score: 70.67
coord: 47..65
score: 67.23
coord: 118..147
score: 82.44
coord: 152..178
score: 82.24
coord: 68..94
score: 72.08
coord: 96..111
score: 69.56
IPR000894Ribulose bisphosphate carboxylase small subunit, domainSMARTSM00961RuBisCO_small_2_acoord: 69..178
e-value: 6.0E-41
score: 152.0
IPR000894Ribulose bisphosphate carboxylase small subunit, domainPFAMPF00101RuBisCO_smallcoord: 70..178
e-value: 1.1E-39
score: 134.3
IPR000894Ribulose bisphosphate carboxylase small subunit, domainCDDcd03527RuBisCO_smallcoord: 68..178
e-value: 5.61239E-61
score: 182.457
IPR024680Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminalPFAMPF12338RbcScoord: 3..44
e-value: 6.4E-22
score: 77.5
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilyGENE3D3.30.190.10Ribulose bisphosphate carboxylase, small subunitcoord: 59..181
e-value: 3.9E-61
score: 206.6
IPR036385Ribulose bisphosphate carboxylase, small subunit superfamilySUPERFAMILY55239RuBisCO, small subunitcoord: 59..180
NoneNo IPR availablePANTHERPTHR31262RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTICcoord: 2..181
NoneNo IPR availablePANTHERPTHR31262:SF14RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTICcoord: 2..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g302760.m01Csor.00g302760.m01mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
cellular_component GO:0009507 chloroplast
cellular_component GO:0009506 plasmodesma