Csor.00g301500 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g301500
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Unknown protein
Location	Csor_Chr18: 10585799 .. 10588835 (+)
RNA-Seq Expression	Csor.00g301500
Synteny	Csor.00g301500

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATTTCTTGCTCGGCTCGAAAAGAACGTATCCATTACGCACTTTAGATCATAAAGACTCGTAATTGAGCTTTAAATATTAGCATAGCATAGAGTGTTATCAAGCATAATTAGCTTATCCATAACGAAGACTTTTATTTACTTTTTAGGTTGCATTTATTGTGACTATGGTCATAAAATGTTACAAACAACCTAAAGCCCACAACTATCAGATATTGTCTGTTTTGGTCGGTTACATATCACAGTGAGTCTCACAGTTTTAAAACACTTAGAAATAATATTTAGTAGCACAGGACTGAGCCGTTACAAATGGTATCAGAGCCAGTCATTAGACGGTACGAGACACTAGTCAAAATAGAGTTAAACCTGTATAATAGACCATTTTACAGACCCATGAATAAGAAACTGTGGCAACCATGAGCGGCGCGATTTAGAGGGCCCCACACTAAACGGTCACAATAAATGCTCTTATTTTCTCAACCAAATTTCTTTCATTTTCTATTTTTCGCTATCCTCTGCTTCACGAGCCTCACGGCTTAGAGATCCAGAAGCCAAAAATCTAGCTGCGAGGGATTTTCTTCAATCGTTGTTCATCAGGTAATCTTGTTAATCTATATATGCAAACATTTTGTTTTGATTTCTCCTGGATTGATCTGATCGCAGTGATCTTTCGCTGTTTTTTCTAGGTTTTTCTGAAGGCGTCTTAGCGGACATTGAAGGAGCTCAAGACCTTGCAGCGCGATCCTCCGTCCTATTGCAGTGCTGGTATTTTGTTTCCTTCTATGTCCTTTTTGCTTTGATGTTTGCTGCTGGTTGGAATCGGATGGTTTAATTTTGATCTGATTGAGAAAATTCTGCTTCGATTGGTGCGTTTCGATAGCCTGAATTGTGTTGCTTGCTGATCTTAGTTTCTAGAGTTGTTTCTGTGTGCTATGAATGAGATTGAGATGTTGAGGATTGTTCGGCTACTGAAATACATCTCGATCTTAAAAACTTATATCTTATGAATTCCTTTGAAAAATACATCTTCATTGTTACGAGATCTTAACGAATTCATATCTTATGAATTCCTTTTAAAGAAACTCATTTCATTTGAAACTTTTTTGTGTAAATGTATTGTTTCTGAATTATTTTCGAAGGAAGTTTTTGATTAGGAAGCCTTCTAAGTTCTTATTCACGTCACTATTTCTTACTTCAATTCCCGAAGTTTCTCCATTCATAATCGAAAATTTCCTCGATTTTAATATATATTTTAAAAATATTTATTCCAAATAAATTTTCAATACATGATTTGTATTTTCTAATATAATTTTTACTAAAAATATAAAATATTGTAATAAATAAAATAATTTCAAATAAATTTTTAATACATAATTTGTATTTTCTAATATAATTTTTACTCAAAATAGAAAATATTGTAATAAATAAAATAATTTCAAACAAATTTTTAATACATAATTTATAATTTTTAATATAATTTTTACTAAAAATATAAAATATCGTAACAAATAAAAAATATAATATGACAATTTTAATACATACGTGTGTATACATACACTTCGAGTAAATAAATAAAGTTATAAGAAATAGATATAAAGTGAGGCAGTGGAGTTGGCGTAGGAGACCACAAATATAGTTATGTTTTCCGTTCCATTTAGCTAAAGAAAAAAAATTTCTCTCAAATTCGAACATGTAGCCATAGTGGCCGATAATCAAATCGCTTGACGATATGTTCTAGTGAGCCAGATGGAGTGTTTGTTTTCCGTTTTACAAACAATTTTTTTCCTCGAGATTTATTTATTTATTATACTGTATTTGTTTTACATGGAATTTTCAGTTTTTAAACCTACATTTAATTTTTAAAATTTATAAAGATTAACTAAAAAACATTTTTTTAAATAGTATTGCAAAAAAAAAAAAAAAAAAAAAAAAACCACATCTTTTAAAATATAAGGATGAAAGTGAACAAAATCTAAATTGATATTAAAAAAATACAATTATTGAAACAAGATAAATATTAATTAAGGTAGCATTCAATTATTTATTTATTTTTTAATTGTATTTTTTAAAAATTCCTAATATCTAATGTCATAGTGGATGTCAAAAATATATATTATAATTTATTGAACTATTATTTTAATTTAAAAAAAAAACCCTATAGCTATGTTTAATTAATGAATTAATTCAATATATATATATATATAAATAAATTTTGTTTGAAAAAATGCATATCCTAAAACAAGAAGTACTAATTAATTAATTAATTTTTTTTTTTTTAAAGAAACAAACAGAAAGTGGGTAATTTACAGTAATGTGGAAAAGTTTACCTGTCCCATACGACTCGCCATCCCAGAGCGATGTGATGTGAGCCATAGTGACAGTGGACTCTCTGCGAACGATCTGCACCGTGCGTATCATCGGTCTCCACCCGAGGTAATAAGCGATCAGTTCATCCCGTTTTCTTCTCGAAATTATCAATTTCCAATTCGAATATGGTATTCTTTTTCTTCCTACATCATCTTCTTCAATCATTTTATCAATTACTTTCTACTTGATGAGCCTGTTGCCATTGTAGGTTGCTGTATGAGCTTCGTTTATTATCCAGTTGTTATTTATAGCTCAAGACTCGGATCTTTTGTTTTGCTTTAAAACATTTTGTTGCCGTACGGAATCGGTTGAGCTGAGAATTTGTTCCCGTAAAGTTTTTGTTTTGTTTTGTTTTGTTTTGTTTCACACTGAATCTTGCAATTTATTGAATCTTCTTGATCTGGATTACTTGATGCGAGTTTGATTGCATATCTTTTGGTCGTGCCTACTTGTTTGCTGAAGAAAATCATGGATTAGATTGGAAATTTGGGTTTGACTATGTTTTGTTGAGATGTAACTCGAAGCTGAAGAATGACGGAAGCAGTTTTTTAGAAAGGTTTTGTGCTTAATGTATTCGGGATAGAGTTAAATAGGATTATTCTTAACAAGTCAAATTGTGGAGGTATTGTACTGACTTCCCTTCTCTTTGTTTATGTCCAGTTGTTTAG

mRNA sequence

ATGCAATTTCTTGCTCGGCTCGAAAAGAACCTGCGAGGGATTTTCTTCAATCGTTGTTCATCAGGTTTTTCTGAAGGCGTCTTAGCGGACATTGAAGGAGCTCAAGACCTTGCAGCGCGATCCTCCGTCCTATTGCAGTGCTGGTATTTTGTTTCCTTCTATGTCCTTTTTGCTTTGATGTTTGCTGCTGGTTGGAATCGGATGTGGACTCTCTGCGAACGATCTGCACCGTGCGTATCATCGGTCTCCACCCGAGTTGTTTAG

Coding sequence (CDS)

ATGCAATTTCTTGCTCGGCTCGAAAAGAACCTGCGAGGGATTTTCTTCAATCGTTGTTCATCAGGTTTTTCTGAAGGCGTCTTAGCGGACATTGAAGGAGCTCAAGACCTTGCAGCGCGATCCTCCGTCCTATTGCAGTGCTGGTATTTTGTTTCCTTCTATGTCCTTTTTGCTTTGATGTTTGCTGCTGGTTGGAATCGGATGTGGACTCTCTGCGAACGATCTGCACCGTGCGTATCATCGGTCTCCACCCGAGTTGTTTAG

Protein sequence

MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRMWTLCERSAPCVSSVSTRVV

Homology

[Close]

BLAST of Csor.00g301500 vs. NCBI nr
Match: KAG6573834.1 (hypothetical protein SDJN03_27721, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 177 bits (450), Expect = 3.96e-56
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALM 60
          MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALM
Sbjct: 1  MQFLARLEKNLRGIFFNRCSSGFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALM 60

Query: 61 FAAGWNRMWTLCERSAPCVSSVSTRVV 87
          FAAGWNRMWTLCERSAPCVSSVSTRVV
Sbjct: 61 FAAGWNRMWTLCERSAPCVSSVSTRVV 87

[Close]

BLAST of Csor.00g301500 vs. NCBI nr
Match: KAG7012901.1 (hypothetical protein SDJN02_25654, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 1.96e-24
Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 0


Query: 22 GFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRM 68
          GFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRM
Sbjct: 38 GFSEGVLADIEGAQDLAARSSVLLQCWYFVSFYVLFALMFAAGWNRM 84

The following BLAST results are available for this feature:

BLAST of Csor.00g301500 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g301500 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573834.1	3.96e-56	100.00	hypothetical protein SDJN03_27721, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012901.1	1.96e-24	100.00	hypothetical protein SDJN02_25654, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Csor.00g301500 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Csor.00g301500 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g301500.m01	Csor.00g301500.m01	mRNA