Csor.00g301200 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g301200
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionF-box protein SKIP5-like
LocationCsor_Chr18: 10376008 .. 10379799 (+)
RNA-Seq ExpressionCsor.00g301200
SyntenyCsor.00g301200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGCAATTTTGGGCCTTCACAAACTCCTGGGCTGGGCTGGGCTACCCATTTAGAAATTGAAGGCCCAGACGAAAGCTACTACCAAAACAATCTGGTTGCCGAAGCAAATGACAGAAGCTAAGCTATGATGTGGTAATTTGTTGAGCTGAGTCCCGAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCTAAGGCCGTCATTTCGATGGTTCAGACGCCGACGATGGAAGTTAACAAGCACAGGAAGTTGATCAATAATTTGGACGATGGCTGTTTGATGCATATTTTCACCTTCCTTTCCCCCATACCAGCTATCTTTCCTTTCCCCCATGCATATTTTCAGCTTCCTTTCAGCTTCCTGCCGCAATGTGTTTCAATTTGTTATCGAATGTTTCTTCGTAAAATTTGTTTGATCTATTTGAGGATTTCTTTTTTGTTCCCTCTTAAAATTGCTTCGTTTGGATGAAATTGAAGGATTCTTCTGGTTGTGCCACAAATTAAGAGGTTTTCTGGGAGGAAGAGACTGAAAATTTTCAATTTAGGTATTTCTGGAAATGGATTGGGAGAAGAAATATAATTCTGATTTCGAATTTGACTTAAGTTGGAATTTGTTATTTCATTGCACATCTAAATCCAAAAAACTCGTTTGAAGAGATGGAATGCAAATCTTTCTTATGTTGAGTCTATCGGAGTTTTTGATTGAGACTTGTCAATATTCATTACGTGTGGTTCAAGTGAACTTCCTGAGCCTCAACAGTTCTTGATATGTGAGGTTTAAAAGAATTTCTTGTAAAGTTAGAAGTTCTTTCCTGGACTTTGGGTATGAATTGGTTGGGCTAACTAGTTGGAAAGAGATAAGAAAAATTCTGGAGGCAATAGTGAAGATCTTGATGACGTTTAACTCAATATGGTACTAATTTTGCTCTAAGAACGCCAGTTCTTTGTACTTTGTGCATTTCTTTTGCTTCTATTCCAGTGACCAAATTTTTATGATTAGCCTTGTGAAGTTGTTAGTTAGTGGATGCCGCCTGCATATTTCCCTGGAGTTTCTGCCTTTTTTTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATGACAACGCCCTCGTTTGCCACAGGTGGCGTTACTTGGCATGTCATCCGAGGCTGTGGCTGCGAGTAGAACGATCTATTAATGATTTTGTTCTTCAAAGGCCTGGGGACACCATACTAATTGCAACAGGTGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAGCCACTTTGCCTGGTATGCTCTTTTTCCCCGCCTTCTTTTGGCAGCTTGGGAGTTAAAATGTATTCTTCGTATAGGATTTAAATACCATCCAATTGCGAGGAATATCTTCTGAAATCATGTGTGGTTTTTTGAATAGTTTCGCTACCCTTTAACACGAAAAAAGTGCCTTATGTTTTATGTGCGAATAATTGTTAATAACTAAGAATTGTGATCCGTGTCTTTAATAAAATTGCTAATAAAATTGCTATATAAAGCTAGAACTTGGGTTCTGTTATTCTGCCTTTAAAAAATGTTTGCACACTTTCTTTCTTCTCTTTGTAGAGAAGCTAAGAAATTATAAGAACGAACAACCTCAACCCTATCATCGAAGTACCAGAGTCTGATAATAATATGTTGCACTATCAAAAGGAAACTACAACGTACGTAAATGCTATTAGTTCTCTCACAAAGTCTTAAAAGAAGGTTACGTTATGCCGTATTAAAGTGAACCTTTGTAGGTTTTGGCCCAGCAATTGAAATTCAGATTAAGTACTTGTTTTGAGAAGCAGTTAAATATTGGTGAAACGTAAAACGGTGGCTTCCTCATCCAGTTGTGCTCAAGTTTTGGACTATAGAGCTTTTAACTTACTTTAGCACCTTTTGTACTATGAAAGTGCCAATATGAGTCATGTAGGAAATATTAGTAGAGTAGTAGTGAGGCCACCGAGTCGAACTACTAGATGGTGCATAACCAAACCAACCTAAACCGATTAGTCAACAGTTTAGTTGGTTCATTCTGGTGCGACGTGGCTTTGTAATGTTTAAGCCTTAAAATTTTGGCATTTCAAAGGCTCAGACAACTCTCGCCCTTGGGAAGACTAGTAGCATCGAAGCCTAATTGTCCTCTTCTGCTATTTGTTGAAGTTTCAATTTTTAGTTTATGTGTACATTATCGGTTGGCTCGGGTATGAATGATCTGGTCATGCCAAACCTGAAGCTGACTGAATATTACCAATCTTTTATACATGAGAAGTTGAACTATTGAACCGAGCTGGTCTGAACCGAAACCAGCGGCAGTTTTTGGTTGGTTTAATCGGTTTTTTTGGGGGGTTTTTCGGTTTTTCCTTGCATCCCTAATAGAGGGGGTTAGTGTTCTTAGGAGGGAGAGATCATTTTCGGATTGTCCATTGTGGGGCTTGGGAGAGAGATTGCCCTCTCGAAAGGCTATTGTTATATTGTAGTTTCTTTTTCATATTGCTATATATTAGTATTTTGTATTTTTTGTGTTGGGTACATAACATATACGTCAATCTATTCCATACTTTTTTCTGGCTTAATTTACGATTGGCAGTGTACGTGTACGAACGTTCTCTTTCTCACAAATGTGAAACTCATTTCATAAATAACTTTTAAGTTTCACCATTTTCCATCATTTATCTTATCTTAATATTGTTCAGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTAGTCGTGGTTCGGAAAGGTACGTGGCATATAATGTAATTTGCAATGGTTAATCCTATACATTTTCTCTCTCTTAACCTTTTGAAAAAATGAACTTGAAAGGTCAAGGACCGAAATGCAGATTTTAGAGATCTTAAAAGTGTAGGAATGAAACCCGACGACTTAAATGGGATGAACTTGAAAGGTCAAGGACCAACATGGAGATTTTAGAGATCTTAAAAGTGTAGGAATAAAGTACAGTTTTAACACGATGACTTAAATGGGACGAACTTGAAAGGTCAAGTACCGAAATGGACATTTTAGAGATCTTAAAAATGTAGGAATAAAGGACGGTTTTAACACGATGACTTCAATGGAATGAACTTGAAAGATGAAAGACCGAAATGGACGTTTTAGAGGCCTTAAAAGTGTAGGAATGAAGGACGGTTTTAAGCTTCTCATTTTGTGACGTTTAGTGGCAACTAATTGAGGCTGAACTTTCTGTTTCTTGTTAACAGTGCTTTGGAGTTCCTCTGTACCAGTAAACTCTCTAACTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGGTTCACAGAAAGGGAAGATTAATTATTGATGGATGTGTTCTTCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGCAAGTCCCGATAGCCTATCGTCTTCCTCGGTGAAAGGCGGTTATACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTATCCTAACGAGCGAGGACCTTGCGTTACAGCACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGACGTCGAACACAAGTTGCAATAA

mRNA sequence

ATGGGCCGCAATTTTGGGCCTTCACAAACTCCTGGGCTGGGCTGGGCTACCCATTTAGAAATTGAAGGCCCAGACGAAAGCTACTACCAAAACAATCTGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCTAAGGCCGTCATTTCGATGGTTCAGACGCCGACGATGGAAGTTAACAAGCACAGGAAGTTGATCAATAATTTGGACGATGGCTTTAGAAGTTCTTTCCTGGACTTTGGGTATGAATTGGTTGGGCTAACTAGTTGGAAAGAGATAAGAAAAATTCTGGAGGCAATAGTGAAGATCTTGATGACGTTTAACTCAATATGGTGGCGTTACTTGGCATGTCATCCGAGGCTGTGGCTGCGAGTAGAACGATCTATTAATGATTTTGTTCTTCAAAGGCCTGGGGACACCATACTAATTGCAACAGGTGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAGCCACTTTGCCTGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTAGTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTCTGTACCAGTAAACTCTCTAACTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGGTTCACAGAAAGGGAAGATTAATTATTGATGGATGTGTTCTTCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGCAAGTCCCGATAGCCTATCGTCTTCCTCGGTGAAAGGCGGTTATACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTATCCTAACGAGCGAGGACCTTGCGTTACAGCACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGACGTCGAACACAAGTTGCAATAA

Coding sequence (CDS)

ATGGGCCGCAATTTTGGGCCTTCACAAACTCCTGGGCTGGGCTGGGCTACCCATTTAGAAATTGAAGGCCCAGACGAAAGCTACTACCAAAACAATCTGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCTAAGGCCGTCATTTCGATGGTTCAGACGCCGACGATGGAAGTTAACAAGCACAGGAAGTTGATCAATAATTTGGACGATGGCTTTAGAAGTTCTTTCCTGGACTTTGGGTATGAATTGGTTGGGCTAACTAGTTGGAAAGAGATAAGAAAAATTCTGGAGGCAATAGTGAAGATCTTGATGACGTTTAACTCAATATGGTGGCGTTACTTGGCATGTCATCCGAGGCTGTGGCTGCGAGTAGAACGATCTATTAATGATTTTGTTCTTCAAAGGCCTGGGGACACCATACTAATTGCAACAGGTGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAGCCACTTTGCCTGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTAGTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTCTGTACCAGTAAACTCTCTAACTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGGTTCACAGAAAGGGAAGATTAATTATTGATGGATGTGTTCTTCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGCAAGTCCCGATAGCCTATCGTCTTCCTCGGTGAAAGGCGGTTATACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTATCCTAACGAGCGAGGACCTTGCGTTACAGCACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGACGTCGAACACAAGTTGCAATAA

Protein sequence

MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Homology
BLAST of Csor.00g301200 vs. ExPASy Swiss-Prot
Match: Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 1.7e-63
Identity = 137/256 (53.52%), Postives = 164/256 (64.06%), Query Frame = 0

Query: 123 INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRV 182
           +NNLDDG     L F            +  I +     L+      WRYLACHPRLWLRV
Sbjct: 35  LNNLDDGCLMHILSF------------LSPIPDRYNTALVCHR---WRYLACHPRLWLRV 94

Query: 183 ERSINDF-------------VLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEE 242
           +R + D                 RPGDTILI  GG  +  SNIQI KPLCL+GGGE+P+E
Sbjct: 95  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGN-YRVSNIQIKKPLCLVGGGEIPDE 154

Query: 243 TTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSC 302
           TTL C+RGS+SALE L T KL+NLTVKAELGCCL+HR GRL IDGCVLQCE+NPLD+LSC
Sbjct: 155 TTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSC 214

Query: 303 PIVCTASPDS----LSSSSVKGGYT-----DGVSVSQTRIEGGAKAILTSEDLALQHVRV 357
           PIV TA  +     LS   VK   T     + V+V QTRIEGGAKA+ T  DL LQ VRV
Sbjct: 215 PIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRV 274

BLAST of Csor.00g301200 vs. NCBI nr
Match: KAG6573804.1 (F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 711 bits (1834), Expect = 3.52e-258
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0

Query: 1   MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRY 60
           MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRY
Sbjct: 1   MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRY 60

Query: 61  ELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHR 120
           ELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHR
Sbjct: 61  ELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHR 120

Query: 121 KLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWL 180
           KLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWL
Sbjct: 121 KLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWL 180

Query: 181 RVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSES 240
           RVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSES
Sbjct: 181 RVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSES 240

Query: 241 ALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSL 300
           ALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSL
Sbjct: 241 ALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSL 300

Query: 301 SSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
           SSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 301 SSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358

BLAST of Csor.00g301200 vs. NCBI nr
Match: KAG6573807.1 (F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 562 bits (1448), Expect = 1.05e-199
Identity = 305/376 (81.12%), Postives = 309/376 (82.18%), Query Frame = 0

Query: 1   MGRNFGPSQTPGLGWA-----THLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSK 60
           MGRNFGPSQTPGLGWA     THLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSK
Sbjct: 1   MGRNFGPSQTPGLGWAGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSK 60

Query: 61  LGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTME 120
           LGGRYELSGKEEPEPEPEPEP          VPVPVPVPVPVPVPVPKAVISMVQTPTME
Sbjct: 61  LGGRYELSGKEEPEPEPEPEP----------VPVPVPVPVPVPVPVPKAVISMVQTPTME 120

Query: 121 VNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACH 180
           VNKHRKLINNLDDG+R +                      A+V          WRYLACH
Sbjct: 121 VNKHRKLINNLDDGYRYN---------------------TALV-------CHRWRYLACH 180

Query: 181 PRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQITKPLCLIG 240
           PRLWLRVERSI D                 RPGDTILIATGG VHSASNIQITKPLCLIG
Sbjct: 181 PRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSASNIQITKPLCLIG 240

Query: 241 GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESN 300
           GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDGCVLQCESN
Sbjct: 241 GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN 300

Query: 301 PLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIY 358
           PLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIY
Sbjct: 301 PLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIY 337

BLAST of Csor.00g301200 vs. NCBI nr
Match: XP_022945754.1 (F-box protein SKIP5-like [Cucurbita moschata])

HSP 1 Score: 496 bits (1278), Expect = 3.21e-173
Identity = 275/338 (81.36%), Postives = 279/338 (82.54%), Query Frame = 0

Query: 34  SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPV 93
           SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEP P P P P P PVPV
Sbjct: 55  SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPEPEPEPEPEPEPVPV 114

Query: 94  PVPVPVPVPKAVISMVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKI 153
           PVPV  PVPKAVISMVQTPTMEVNKHRKLINNLDDG       F      L+      + 
Sbjct: 115 PVPV--PVPKAVISMVQTPTMEVNKHRKLINNLDDGCLMHIFTF------LSPIPFADRY 174

Query: 154 LEAIVKILMTFNSIWWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILI 213
             A+V          WRYLACHPRLWLRVERSI D                 RPGDTILI
Sbjct: 175 NTALV-------CHRWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILI 234

Query: 214 ATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 273
           ATGG VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG
Sbjct: 235 ATGG-VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 294

Query: 274 CCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 333
           CCL+HRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI
Sbjct: 295 CCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 354

Query: 334 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
           EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 355 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 376

BLAST of Csor.00g301200 vs. NCBI nr
Match: XP_023542059.1 (F-box protein SKIP5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 476 bits (1225), Expect = 3.22e-166
Identity = 262/324 (80.86%), Postives = 266/324 (82.10%), Query Frame = 0

Query: 48  LCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVIS 107
           LCGLWQSKLGGRYELSGKEEPEPEPEPEPEP P PVPVPVPVPVPVPV    PVPKAVIS
Sbjct: 5   LCGLWQSKLGGRYELSGKEEPEPEPEPEPEPEPEPVPVPVPVPVPVPV----PVPKAVIS 64

Query: 108 MVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSI 167
           MVQTPTMEVNKHRKLINNLDDG       F            +  I +     L+     
Sbjct: 65  MVQTPTMEVNKHRKLINNLDDGCLMHIFTF------------LSPIPDRYNTALVCHR-- 124

Query: 168 WWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQI 227
            WRYLACHPRLWLRVERSI D                 RPGDTILIATGG VHSASNIQI
Sbjct: 125 -WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSASNIQI 184

Query: 228 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDG 287
           TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDG
Sbjct: 185 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDG 244

Query: 288 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 347
           CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA
Sbjct: 245 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 304

Query: 348 LQHVRVIYARTALFFWFDVEHKLQ 358
           LQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 305 LQHVRVIYARTALFFWFDVEHKLQ 308

BLAST of Csor.00g301200 vs. NCBI nr
Match: XP_022966938.1 (F-box protein SKIP5 isoform X2 [Cucurbita maxima])

HSP 1 Score: 371 bits (953), Expect = 8.56e-126
Identity = 199/264 (75.38%), Postives = 205/264 (77.65%), Query Frame = 0

Query: 108 MVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSI 167
           M +TPTME NK RK INNLDDG       F            +  I +     L+     
Sbjct: 1   MAETPTMEDNKQRKWINNLDDGCLMHIFSF------------LSPIPDRYNTALVCHR-- 60

Query: 168 WWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQI 227
            WRYLACHPRLWLRVERSI D                 RPGDTILIATGG VHS SNIQI
Sbjct: 61  -WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSVSNIQI 120

Query: 228 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDG 287
           TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDG
Sbjct: 121 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDG 180

Query: 288 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 347
           CVLQCESNPLDYLSCPIVCTASPD LSSSSVKGGY DGVSVSQTRIEGGAKAILTSEDLA
Sbjct: 181 CVLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLA 240

Query: 348 LQHVRVIYARTALFFWFDVEHKLQ 358
           L+HVRVIYARTALFFWFDVEHKLQ
Sbjct: 241 LRHVRVIYARTALFFWFDVEHKLQ 248

BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match: A0A6J1G1V1 (F-box protein SKIP5-like OS=Cucurbita moschata OX=3662 GN=LOC111449901 PE=4 SV=1)

HSP 1 Score: 496 bits (1278), Expect = 1.55e-173
Identity = 275/338 (81.36%), Postives = 279/338 (82.54%), Query Frame = 0

Query: 34  SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPV 93
           SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEP P P P P P PVPV
Sbjct: 55  SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPEPEPEPEPEPEPVPV 114

Query: 94  PVPVPVPVPKAVISMVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKI 153
           PVPV  PVPKAVISMVQTPTMEVNKHRKLINNLDDG       F      L+      + 
Sbjct: 115 PVPV--PVPKAVISMVQTPTMEVNKHRKLINNLDDGCLMHIFTF------LSPIPFADRY 174

Query: 154 LEAIVKILMTFNSIWWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILI 213
             A+V          WRYLACHPRLWLRVERSI D                 RPGDTILI
Sbjct: 175 NTALV-------CHRWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILI 234

Query: 214 ATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 273
           ATGG VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG
Sbjct: 235 ATGG-VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 294

Query: 274 CCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 333
           CCL+HRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI
Sbjct: 295 CCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 354

Query: 334 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
           EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 355 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 376

BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match: A0A6J1HTP2 (F-box protein SKIP5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 371 bits (953), Expect = 4.14e-126
Identity = 199/264 (75.38%), Postives = 205/264 (77.65%), Query Frame = 0

Query: 108 MVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSI 167
           M +TPTME NK RK INNLDDG       F            +  I +     L+     
Sbjct: 1   MAETPTMEDNKQRKWINNLDDGCLMHIFSF------------LSPIPDRYNTALVCHR-- 60

Query: 168 WWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQI 227
            WRYLACHPRLWLRVERSI D                 RPGDTILIATGG VHS SNIQI
Sbjct: 61  -WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSVSNIQI 120

Query: 228 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDG 287
           TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDG
Sbjct: 121 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDG 180

Query: 288 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 347
           CVLQCESNPLDYLSCPIVCTASPD LSSSSVKGGY DGVSVSQTRIEGGAKAILTSEDLA
Sbjct: 181 CVLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLA 240

Query: 348 LQHVRVIYARTALFFWFDVEHKLQ 358
           L+HVRVIYARTALFFWFDVEHKLQ
Sbjct: 241 LRHVRVIYARTALFFWFDVEHKLQ 248

BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match: A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)

HSP 1 Score: 363 bits (931), Expect = 1.34e-122
Identity = 199/275 (72.36%), Postives = 205/275 (74.55%), Query Frame = 0

Query: 108 MVQTPTMEVNKHRKL-----------INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEA 167
           M +TPTME NK RK            INNLDDG       F            +  I + 
Sbjct: 1   MAETPTMEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSF------------LSPIPDR 60

Query: 168 IVKILMTFNSIWWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATG 227
               L+      WRYLACHPRLWLRVERSI D                 RPGDTILIATG
Sbjct: 61  YNTALVCHR---WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATG 120

Query: 228 GGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL 287
           G VHS SNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL
Sbjct: 121 G-VHSVSNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL 180

Query: 288 VHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGG 347
           +HRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPD LSSSSVKGGY DGVSVSQTRIEGG
Sbjct: 181 LHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGG 240

Query: 348 AKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
           AKAILTSEDLAL+HVRVIYARTALFFWFDVEHKLQ
Sbjct: 241 AKAILTSEDLALRHVRVIYARTALFFWFDVEHKLQ 259

BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match: A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)

HSP 1 Score: 343 bits (881), Expect = 5.98e-115
Identity = 173/202 (85.64%), Postives = 179/202 (88.61%), Query Frame = 0

Query: 169 WRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQIT 228
           WRYLACHPRLWLRVERSI D                 RPGDTILIATGG VHSASNIQIT
Sbjct: 63  WRYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGG-VHSASNIQIT 122

Query: 229 KPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGC 288
           KPLCLIGGGELPEETTLFC+RGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDGC
Sbjct: 123 KPLCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGC 182

Query: 289 VLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLAL 348
           VLQCESNPLDYLSCPIVC+A+PD L  SSVKGGYTDGVSVSQTRIEGGAKA+LTSEDLAL
Sbjct: 183 VLQCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLAL 242

Query: 349 QHVRVIYARTALFFWFDVEHKL 357
           QHVRVIYARTALFFWFDVE+ L
Sbjct: 243 QHVRVIYARTALFFWFDVEYNL 263

BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match: A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)

HSP 1 Score: 338 bits (866), Expect = 1.54e-112
Identity = 171/202 (84.65%), Postives = 176/202 (87.13%), Query Frame = 0

Query: 169 WRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQIT 228
           WRYLACHPRLWLRVERSI D                 RPGDTILIATGG VHSASNIQIT
Sbjct: 72  WRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG-VHSASNIQIT 131

Query: 229 KPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGC 288
           KPLCLIGGGELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCL+HRKGRLI+DGC
Sbjct: 132 KPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGC 191

Query: 289 VLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLAL 348
           VLQCESNPLDYLSCPIVCTASPD L  SSVKGGYT GVSVS TRIEGGAKA+LTSEDL L
Sbjct: 192 VLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTL 251

Query: 349 QHVRVIYARTALFFWFDVEHKL 357
           QHVRVIYARTALFFWFDVE+KL
Sbjct: 252 QHVRVIYARTALFFWFDVEYKL 272

BLAST of Csor.00g301200 vs. TAIR 10
Match: AT3G54480.1 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-64
Identity = 137/256 (53.52%), Postives = 164/256 (64.06%), Query Frame = 0

Query: 123 INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRV 182
           +NNLDDG     L F            +  I +     L+      WRYLACHPRLWLRV
Sbjct: 35  LNNLDDGCLMHILSF------------LSPIPDRYNTALVCHR---WRYLACHPRLWLRV 94

Query: 183 ERSINDF-------------VLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEE 242
           +R + D                 RPGDTILI  GG  +  SNIQI KPLCL+GGGE+P+E
Sbjct: 95  DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGN-YRVSNIQIKKPLCLVGGGEIPDE 154

Query: 243 TTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSC 302
           TTL C+RGS+SALE L T KL+NLTVKAELGCCL+HR GRL IDGCVLQCE+NPLD+LSC
Sbjct: 155 TTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSC 214

Query: 303 PIVCTASPDS----LSSSSVKGGYT-----DGVSVSQTRIEGGAKAILTSEDLALQHVRV 357
           PIV TA  +     LS   VK   T     + V+V QTRIEGGAKA+ T  DL LQ VRV
Sbjct: 215 PIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRV 274

BLAST of Csor.00g301200 vs. TAIR 10
Match: AT3G54480.2 (SKP1/ASK-interacting protein 5 )

HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0

Query: 123 INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRV 182
           +NNLDDG     L F            +  I +     L+      WRYLACHPRLWLRV
Sbjct: 35  LNNLDDGCLMHILSF------------LSPIPDRYNTALVCHR---WRYLACHPRLWLRV 90

Query: 183 ERSINDFVLQRPG 196
           +R + D  L +PG
Sbjct: 95  DRFVKD--LSQPG 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q94FT21.7e-6353.52F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
KAG6573804.13.52e-258100.00F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6573807.11.05e-19981.12F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022945754.13.21e-17381.36F-box protein SKIP5-like [Cucurbita moschata][more]
XP_023542059.13.22e-16680.86F-box protein SKIP5-like [Cucurbita pepo subsp. pepo][more]
XP_022966938.18.56e-12675.38F-box protein SKIP5 isoform X2 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1G1V11.55e-17381.36F-box protein SKIP5-like OS=Cucurbita moschata OX=3662 GN=LOC111449901 PE=4 SV=1[more]
A0A6J1HTP24.14e-12675.38F-box protein SKIP5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ... [more]
A0A6J1HPC31.34e-12272.36F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ... [more]
A0A6J1CBW55.98e-11585.64F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1[more]
A0A0A0KRR71.54e-11284.65F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ... [more]
Match NameE-valueIdentityDescription
AT3G54480.11.2e-6453.52SKP1/ASK-interacting protein 5 [more]
AT3G54480.22.9e-0539.73SKP1/ASK-interacting protein 5 [more]
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR045140SHC SH2 domain-binding protein 1-likePANTHERPTHR14695SHC SH2-DOMAIN BINDING PROTEIN 1-RELATEDcoord: 102..185
IPR045140SHC SH2 domain-binding protein 1-likePANTHERPTHR14695SHC SH2-DOMAIN BINDING PROTEIN 1-RELATEDcoord: 193..356
NoneNo IPR availablePANTHERPTHR14695:SF4PROTEIN NESSUN DORMAcoord: 102..185
NoneNo IPR availablePANTHERPTHR14695:SF4PROTEIN NESSUN DORMAcoord: 193..356

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g301200.m01Csor.00g301200.m01mRNA