Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSstart_codoninitialpolypeptideintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCGCAATTTTGGGCCTTCACAAACTCCTGGGCTGGGCTGGGCTACCCATTTAGAAATTGAAGGCCCAGACGAAAGCTACTACCAAAACAATCTGGTTGCCGAAGCAAATGACAGAAGCTAAGCTATGATGTGGTAATTTGTTGAGCTGAGTCCCGAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCTAAGGCCGTCATTTCGATGGTTCAGACGCCGACGATGGAAGTTAACAAGCACAGGAAGTTGATCAATAATTTGGACGATGGCTGTTTGATGCATATTTTCACCTTCCTTTCCCCCATACCAGCTATCTTTCCTTTCCCCCATGCATATTTTCAGCTTCCTTTCAGCTTCCTGCCGCAATGTGTTTCAATTTGTTATCGAATGTTTCTTCGTAAAATTTGTTTGATCTATTTGAGGATTTCTTTTTTGTTCCCTCTTAAAATTGCTTCGTTTGGATGAAATTGAAGGATTCTTCTGGTTGTGCCACAAATTAAGAGGTTTTCTGGGAGGAAGAGACTGAAAATTTTCAATTTAGGTATTTCTGGAAATGGATTGGGAGAAGAAATATAATTCTGATTTCGAATTTGACTTAAGTTGGAATTTGTTATTTCATTGCACATCTAAATCCAAAAAACTCGTTTGAAGAGATGGAATGCAAATCTTTCTTATGTTGAGTCTATCGGAGTTTTTGATTGAGACTTGTCAATATTCATTACGTGTGGTTCAAGTGAACTTCCTGAGCCTCAACAGTTCTTGATATGTGAGGTTTAAAAGAATTTCTTGTAAAGTTAGAAGTTCTTTCCTGGACTTTGGGTATGAATTGGTTGGGCTAACTAGTTGGAAAGAGATAAGAAAAATTCTGGAGGCAATAGTGAAGATCTTGATGACGTTTAACTCAATATGGTACTAATTTTGCTCTAAGAACGCCAGTTCTTTGTACTTTGTGCATTTCTTTTGCTTCTATTCCAGTGACCAAATTTTTATGATTAGCCTTGTGAAGTTGTTAGTTAGTGGATGCCGCCTGCATATTTCCCTGGAGTTTCTGCCTTTTTTTGTCACTTTTGCCATTGAGTTTGCAGATCGGTATGACAACGCCCTCGTTTGCCACAGGTGGCGTTACTTGGCATGTCATCCGAGGCTGTGGCTGCGAGTAGAACGATCTATTAATGATTTTGTTCTTCAAAGGCCTGGGGACACCATACTAATTGCAACAGGTGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAGCCACTTTGCCTGGTATGCTCTTTTTCCCCGCCTTCTTTTGGCAGCTTGGGAGTTAAAATGTATTCTTCGTATAGGATTTAAATACCATCCAATTGCGAGGAATATCTTCTGAAATCATGTGTGGTTTTTTGAATAGTTTCGCTACCCTTTAACACGAAAAAAGTGCCTTATGTTTTATGTGCGAATAATTGTTAATAACTAAGAATTGTGATCCGTGTCTTTAATAAAATTGCTAATAAAATTGCTATATAAAGCTAGAACTTGGGTTCTGTTATTCTGCCTTTAAAAAATGTTTGCACACTTTCTTTCTTCTCTTTGTAGAGAAGCTAAGAAATTATAAGAACGAACAACCTCAACCCTATCATCGAAGTACCAGAGTCTGATAATAATATGTTGCACTATCAAAAGGAAACTACAACGTACGTAAATGCTATTAGTTCTCTCACAAAGTCTTAAAAGAAGGTTACGTTATGCCGTATTAAAGTGAACCTTTGTAGGTTTTGGCCCAGCAATTGAAATTCAGATTAAGTACTTGTTTTGAGAAGCAGTTAAATATTGGTGAAACGTAAAACGGTGGCTTCCTCATCCAGTTGTGCTCAAGTTTTGGACTATAGAGCTTTTAACTTACTTTAGCACCTTTTGTACTATGAAAGTGCCAATATGAGTCATGTAGGAAATATTAGTAGAGTAGTAGTGAGGCCACCGAGTCGAACTACTAGATGGTGCATAACCAAACCAACCTAAACCGATTAGTCAACAGTTTAGTTGGTTCATTCTGGTGCGACGTGGCTTTGTAATGTTTAAGCCTTAAAATTTTGGCATTTCAAAGGCTCAGACAACTCTCGCCCTTGGGAAGACTAGTAGCATCGAAGCCTAATTGTCCTCTTCTGCTATTTGTTGAAGTTTCAATTTTTAGTTTATGTGTACATTATCGGTTGGCTCGGGTATGAATGATCTGGTCATGCCAAACCTGAAGCTGACTGAATATTACCAATCTTTTATACATGAGAAGTTGAACTATTGAACCGAGCTGGTCTGAACCGAAACCAGCGGCAGTTTTTGGTTGGTTTAATCGGTTTTTTTGGGGGGTTTTTCGGTTTTTCCTTGCATCCCTAATAGAGGGGGTTAGTGTTCTTAGGAGGGAGAGATCATTTTCGGATTGTCCATTGTGGGGCTTGGGAGAGAGATTGCCCTCTCGAAAGGCTATTGTTATATTGTAGTTTCTTTTTCATATTGCTATATATTAGTATTTTGTATTTTTTGTGTTGGGTACATAACATATACGTCAATCTATTCCATACTTTTTTCTGGCTTAATTTACGATTGGCAGTGTACGTGTACGAACGTTCTCTTTCTCACAAATGTGAAACTCATTTCATAAATAACTTTTAAGTTTCACCATTTTCCATCATTTATCTTATCTTAATATTGTTCAGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTAGTCGTGGTTCGGAAAGGTACGTGGCATATAATGTAATTTGCAATGGTTAATCCTATACATTTTCTCTCTCTTAACCTTTTGAAAAAATGAACTTGAAAGGTCAAGGACCGAAATGCAGATTTTAGAGATCTTAAAAGTGTAGGAATGAAACCCGACGACTTAAATGGGATGAACTTGAAAGGTCAAGGACCAACATGGAGATTTTAGAGATCTTAAAAGTGTAGGAATAAAGTACAGTTTTAACACGATGACTTAAATGGGACGAACTTGAAAGGTCAAGTACCGAAATGGACATTTTAGAGATCTTAAAAATGTAGGAATAAAGGACGGTTTTAACACGATGACTTCAATGGAATGAACTTGAAAGATGAAAGACCGAAATGGACGTTTTAGAGGCCTTAAAAGTGTAGGAATGAAGGACGGTTTTAAGCTTCTCATTTTGTGACGTTTAGTGGCAACTAATTGAGGCTGAACTTTCTGTTTCTTGTTAACAGTGCTTTGGAGTTCCTCTGTACCAGTAAACTCTCTAACTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGGTTCACAGAAAGGGAAGATTAATTATTGATGGATGTGTTCTTCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGCAAGTCCCGATAGCCTATCGTCTTCCTCGGTGAAAGGCGGTTATACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTATCCTAACGAGCGAGGACCTTGCGTTACAGCACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGACGTCGAACACAAGTTGCAATAA
mRNA sequence
ATGGGCCGCAATTTTGGGCCTTCACAAACTCCTGGGCTGGGCTGGGCTACCCATTTAGAAATTGAAGGCCCAGACGAAAGCTACTACCAAAACAATCTGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCTAAGGCCGTCATTTCGATGGTTCAGACGCCGACGATGGAAGTTAACAAGCACAGGAAGTTGATCAATAATTTGGACGATGGCTTTAGAAGTTCTTTCCTGGACTTTGGGTATGAATTGGTTGGGCTAACTAGTTGGAAAGAGATAAGAAAAATTCTGGAGGCAATAGTGAAGATCTTGATGACGTTTAACTCAATATGGTGGCGTTACTTGGCATGTCATCCGAGGCTGTGGCTGCGAGTAGAACGATCTATTAATGATTTTGTTCTTCAAAGGCCTGGGGACACCATACTAATTGCAACAGGTGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAGCCACTTTGCCTGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTAGTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTCTGTACCAGTAAACTCTCTAACTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGGTTCACAGAAAGGGAAGATTAATTATTGATGGATGTGTTCTTCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGCAAGTCCCGATAGCCTATCGTCTTCCTCGGTGAAAGGCGGTTATACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTATCCTAACGAGCGAGGACCTTGCGTTACAGCACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGACGTCGAACACAAGTTGCAATAA
Coding sequence (CDS)
ATGGGCCGCAATTTTGGGCCTTCACAAACTCCTGGGCTGGGCTGGGCTACCCATTTAGAAATTGAAGGCCCAGACGAAAGCTACTACCAAAACAATCTGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGCTTTGTGTGGGCTATGGCAGTCAAAGCTCGGAGGCCGGTATGAGTTGAGTGGTAAAGAAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGAGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCAGTGCCTAAGGCCGTCATTTCGATGGTTCAGACGCCGACGATGGAAGTTAACAAGCACAGGAAGTTGATCAATAATTTGGACGATGGCTTTAGAAGTTCTTTCCTGGACTTTGGGTATGAATTGGTTGGGCTAACTAGTTGGAAAGAGATAAGAAAAATTCTGGAGGCAATAGTGAAGATCTTGATGACGTTTAACTCAATATGGTGGCGTTACTTGGCATGTCATCCGAGGCTGTGGCTGCGAGTAGAACGATCTATTAATGATTTTGTTCTTCAAAGGCCTGGGGACACCATACTAATTGCAACAGGTGGTGGAGTTCATTCTGCCTCTAACATTCAAATTACAAAGCCACTTTGCCTGATTGGTGGAGGTGAACTTCCTGAGGAGACAACACTTTTCTGTAGTCGTGGTTCGGAAAGTGCTTTGGAGTTCCTCTGTACCAGTAAACTCTCTAACTTAACAGTGAAGGCAGAACTTGGTTGCTGCTTGGTTCACAGAAAGGGAAGATTAATTATTGATGGATGTGTTCTTCAATGTGAGTCAAACCCTTTGGACTACCTATCATGCCCCATTGTTTGTACTGCAAGTCCCGATAGCCTATCGTCTTCCTCGGTGAAAGGCGGTTATACAGATGGCGTTTCTGTTTCACAAACCCGCATCGAGGGTGGTGCCAAAGCTATCCTAACGAGCGAGGACCTTGCGTTACAGCACGTTCGAGTTATTTATGCTCGAACAGCTTTGTTCTTTTGGTTTGACGTCGAACACAAGTTGCAATAA
Protein sequence
MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Homology
BLAST of Csor.00g301200 vs. ExPASy Swiss-Prot
Match:
Q94FT2 (F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1)
HSP 1 Score: 244.6 bits (623), Expect = 1.7e-63
Identity = 137/256 (53.52%), Postives = 164/256 (64.06%), Query Frame = 0
Query: 123 INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRV 182
+NNLDDG L F + I + L+ WRYLACHPRLWLRV
Sbjct: 35 LNNLDDGCLMHILSF------------LSPIPDRYNTALVCHR---WRYLACHPRLWLRV 94
Query: 183 ERSINDF-------------VLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEE 242
+R + D RPGDTILI GG + SNIQI KPLCL+GGGE+P+E
Sbjct: 95 DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGN-YRVSNIQIKKPLCLVGGGEIPDE 154
Query: 243 TTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSC 302
TTL C+RGS+SALE L T KL+NLTVKAELGCCL+HR GRL IDGCVLQCE+NPLD+LSC
Sbjct: 155 TTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSC 214
Query: 303 PIVCTASPDS----LSSSSVKGGYT-----DGVSVSQTRIEGGAKAILTSEDLALQHVRV 357
PIV TA + LS VK T + V+V QTRIEGGAKA+ T DL LQ VRV
Sbjct: 215 PIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRV 274
BLAST of Csor.00g301200 vs. NCBI nr
Match:
KAG6573804.1 (F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 711 bits (1834), Expect = 3.52e-258
Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 0
Query: 1 MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRY 60
MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRY
Sbjct: 1 MGRNFGPSQTPGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSKLGGRY 60
Query: 61 ELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHR 120
ELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHR
Sbjct: 61 ELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTMEVNKHR 120
Query: 121 KLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWL 180
KLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWL
Sbjct: 121 KLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWL 180
Query: 181 RVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSES 240
RVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSES
Sbjct: 181 RVERSINDFVLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSES 240
Query: 241 ALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSL 300
ALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSL
Sbjct: 241 ALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSL 300
Query: 301 SSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
SSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 301 SSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
BLAST of Csor.00g301200 vs. NCBI nr
Match:
KAG6573807.1 (F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 562 bits (1448), Expect = 1.05e-199
Identity = 305/376 (81.12%), Postives = 309/376 (82.18%), Query Frame = 0
Query: 1 MGRNFGPSQTPGLGWA-----THLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSK 60
MGRNFGPSQTPGLGWA THLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSK
Sbjct: 1 MGRNFGPSQTPGLGWAGLGWATHLEIEGPDESYYQNNLSKLGGRYELSGKEALCGLWQSK 60
Query: 61 LGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVISMVQTPTME 120
LGGRYELSGKEEPEPEPEPEP VPVPVPVPVPVPVPVPKAVISMVQTPTME
Sbjct: 61 LGGRYELSGKEEPEPEPEPEP----------VPVPVPVPVPVPVPVPKAVISMVQTPTME 120
Query: 121 VNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACH 180
VNKHRKLINNLDDG+R + A+V WRYLACH
Sbjct: 121 VNKHRKLINNLDDGYRYN---------------------TALV-------CHRWRYLACH 180
Query: 181 PRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQITKPLCLIG 240
PRLWLRVERSI D RPGDTILIATGG VHSASNIQITKPLCLIG
Sbjct: 181 PRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSASNIQITKPLCLIG 240
Query: 241 GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESN 300
GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDGCVLQCESN
Sbjct: 241 GGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGCVLQCESN 300
Query: 301 PLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIY 358
PLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIY
Sbjct: 301 PLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLALQHVRVIY 337
BLAST of Csor.00g301200 vs. NCBI nr
Match:
XP_022945754.1 (F-box protein SKIP5-like [Cucurbita moschata])
HSP 1 Score: 496 bits (1278), Expect = 3.21e-173
Identity = 275/338 (81.36%), Postives = 279/338 (82.54%), Query Frame = 0
Query: 34 SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPV 93
SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEP P P P P P PVPV
Sbjct: 55 SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPEPEPEPEPEPEPVPV 114
Query: 94 PVPVPVPVPKAVISMVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKI 153
PVPV PVPKAVISMVQTPTMEVNKHRKLINNLDDG F L+ +
Sbjct: 115 PVPV--PVPKAVISMVQTPTMEVNKHRKLINNLDDGCLMHIFTF------LSPIPFADRY 174
Query: 154 LEAIVKILMTFNSIWWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILI 213
A+V WRYLACHPRLWLRVERSI D RPGDTILI
Sbjct: 175 NTALV-------CHRWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILI 234
Query: 214 ATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 273
ATGG VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG
Sbjct: 235 ATGG-VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 294
Query: 274 CCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 333
CCL+HRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI
Sbjct: 295 CCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 354
Query: 334 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 355 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 376
BLAST of Csor.00g301200 vs. NCBI nr
Match:
XP_023542059.1 (F-box protein SKIP5-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 476 bits (1225), Expect = 3.22e-166
Identity = 262/324 (80.86%), Postives = 266/324 (82.10%), Query Frame = 0
Query: 48 LCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPVPVPVPVPVPKAVIS 107
LCGLWQSKLGGRYELSGKEEPEPEPEPEPEP P PVPVPVPVPVPVPV PVPKAVIS
Sbjct: 5 LCGLWQSKLGGRYELSGKEEPEPEPEPEPEPEPEPVPVPVPVPVPVPV----PVPKAVIS 64
Query: 108 MVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSI 167
MVQTPTMEVNKHRKLINNLDDG F + I + L+
Sbjct: 65 MVQTPTMEVNKHRKLINNLDDGCLMHIFTF------------LSPIPDRYNTALVCHR-- 124
Query: 168 WWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQI 227
WRYLACHPRLWLRVERSI D RPGDTILIATGG VHSASNIQI
Sbjct: 125 -WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSASNIQI 184
Query: 228 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDG 287
TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDG
Sbjct: 185 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDG 244
Query: 288 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 347
CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA
Sbjct: 245 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 304
Query: 348 LQHVRVIYARTALFFWFDVEHKLQ 358
LQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 305 LQHVRVIYARTALFFWFDVEHKLQ 308
BLAST of Csor.00g301200 vs. NCBI nr
Match:
XP_022966938.1 (F-box protein SKIP5 isoform X2 [Cucurbita maxima])
HSP 1 Score: 371 bits (953), Expect = 8.56e-126
Identity = 199/264 (75.38%), Postives = 205/264 (77.65%), Query Frame = 0
Query: 108 MVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSI 167
M +TPTME NK RK INNLDDG F + I + L+
Sbjct: 1 MAETPTMEDNKQRKWINNLDDGCLMHIFSF------------LSPIPDRYNTALVCHR-- 60
Query: 168 WWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQI 227
WRYLACHPRLWLRVERSI D RPGDTILIATGG VHS SNIQI
Sbjct: 61 -WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSVSNIQI 120
Query: 228 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDG 287
TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDG
Sbjct: 121 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDG 180
Query: 288 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 347
CVLQCESNPLDYLSCPIVCTASPD LSSSSVKGGY DGVSVSQTRIEGGAKAILTSEDLA
Sbjct: 181 CVLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLA 240
Query: 348 LQHVRVIYARTALFFWFDVEHKLQ 358
L+HVRVIYARTALFFWFDVEHKLQ
Sbjct: 241 LRHVRVIYARTALFFWFDVEHKLQ 248
BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match:
A0A6J1G1V1 (F-box protein SKIP5-like OS=Cucurbita moschata OX=3662 GN=LOC111449901 PE=4 SV=1)
HSP 1 Score: 496 bits (1278), Expect = 1.55e-173
Identity = 275/338 (81.36%), Postives = 279/338 (82.54%), Query Frame = 0
Query: 34 SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPVPVPVPVPVPVPVPV 93
SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEP P P P P P PVPV
Sbjct: 55 SKLGGRYELSGKEALCGLWQSKLGGRYELSGKEEPEPEPEPEPEPEPEPEPEPEPEPVPV 114
Query: 94 PVPVPVPVPKAVISMVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKI 153
PVPV PVPKAVISMVQTPTMEVNKHRKLINNLDDG F L+ +
Sbjct: 115 PVPV--PVPKAVISMVQTPTMEVNKHRKLINNLDDGCLMHIFTF------LSPIPFADRY 174
Query: 154 LEAIVKILMTFNSIWWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILI 213
A+V WRYLACHPRLWLRVERSI D RPGDTILI
Sbjct: 175 NTALV-------CHRWRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILI 234
Query: 214 ATGGGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 273
ATGG VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG
Sbjct: 235 ATGG-VHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELG 294
Query: 274 CCLVHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 333
CCL+HRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI
Sbjct: 295 CCLLHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRI 354
Query: 334 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ
Sbjct: 355 EGGAKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 376
BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match:
A0A6J1HTP2 (F-box protein SKIP5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)
HSP 1 Score: 371 bits (953), Expect = 4.14e-126
Identity = 199/264 (75.38%), Postives = 205/264 (77.65%), Query Frame = 0
Query: 108 MVQTPTMEVNKHRKLINNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSI 167
M +TPTME NK RK INNLDDG F + I + L+
Sbjct: 1 MAETPTMEDNKQRKWINNLDDGCLMHIFSF------------LSPIPDRYNTALVCHR-- 60
Query: 168 WWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQI 227
WRYLACHPRLWLRVERSI D RPGDTILIATGG VHS SNIQI
Sbjct: 61 -WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATGG-VHSVSNIQI 120
Query: 228 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDG 287
TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDG
Sbjct: 121 TKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDG 180
Query: 288 CVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLA 347
CVLQCESNPLDYLSCPIVCTASPD LSSSSVKGGY DGVSVSQTRIEGGAKAILTSEDLA
Sbjct: 181 CVLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGGAKAILTSEDLA 240
Query: 348 LQHVRVIYARTALFFWFDVEHKLQ 358
L+HVRVIYARTALFFWFDVEHKLQ
Sbjct: 241 LRHVRVIYARTALFFWFDVEHKLQ 248
BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match:
A0A6J1HPC3 (F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 SV=1)
HSP 1 Score: 363 bits (931), Expect = 1.34e-122
Identity = 199/275 (72.36%), Postives = 205/275 (74.55%), Query Frame = 0
Query: 108 MVQTPTMEVNKHRKL-----------INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEA 167
M +TPTME NK RK INNLDDG F + I +
Sbjct: 1 MAETPTMEDNKQRKWKRKGTPSSSARINNLDDGCLMHIFSF------------LSPIPDR 60
Query: 168 IVKILMTFNSIWWRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATG 227
L+ WRYLACHPRLWLRVERSI D RPGDTILIATG
Sbjct: 61 YNTALVCHR---WRYLACHPRLWLRVERSIKDLSESGVFPTVEAAVAAARPGDTILIATG 120
Query: 228 GGVHSASNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL 287
G VHS SNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL
Sbjct: 121 G-VHSVSNIQITKPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCL 180
Query: 288 VHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGG 347
+HRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPD LSSSSVKGGY DGVSVSQTRIEGG
Sbjct: 181 LHRKGRLIIDGCVLQCESNPLDYLSCPIVCTASPDKLSSSSVKGGYADGVSVSQTRIEGG 240
Query: 348 AKAILTSEDLALQHVRVIYARTALFFWFDVEHKLQ 358
AKAILTSEDLAL+HVRVIYARTALFFWFDVEHKLQ
Sbjct: 241 AKAILTSEDLALRHVRVIYARTALFFWFDVEHKLQ 259
BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match:
A0A6J1CBW5 (F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1)
HSP 1 Score: 343 bits (881), Expect = 5.98e-115
Identity = 173/202 (85.64%), Postives = 179/202 (88.61%), Query Frame = 0
Query: 169 WRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQIT 228
WRYLACHPRLWLRVERSI D RPGDTILIATGG VHSASNIQIT
Sbjct: 63 WRYLACHPRLWLRVERSIKDLSESGVFPTIEAAVAAARPGDTILIATGG-VHSASNIQIT 122
Query: 229 KPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGC 288
KPLCLIGGGELPEETTLFC+RGSESALEFLCTSKLSNLTVKAELGCCL+HRKGRLIIDGC
Sbjct: 123 KPLCLIGGGELPEETTLFCTRGSESALEFLCTSKLSNLTVKAELGCCLLHRKGRLIIDGC 182
Query: 289 VLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLAL 348
VLQCESNPLDYLSCPIVC+A+PD L SSVKGGYTDGVSVSQTRIEGGAKA+LTSEDLAL
Sbjct: 183 VLQCESNPLDYLSCPIVCSANPDKLLPSSVKGGYTDGVSVSQTRIEGGAKAVLTSEDLAL 242
Query: 349 QHVRVIYARTALFFWFDVEHKL 357
QHVRVIYARTALFFWFDVE+ L
Sbjct: 243 QHVRVIYARTALFFWFDVEYNL 263
BLAST of Csor.00g301200 vs. ExPASy TrEMBL
Match:
A0A0A0KRR7 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 SV=1)
HSP 1 Score: 338 bits (866), Expect = 1.54e-112
Identity = 171/202 (84.65%), Postives = 176/202 (87.13%), Query Frame = 0
Query: 169 WRYLACHPRLWLRVERSINDF-------------VLQRPGDTILIATGGGVHSASNIQIT 228
WRYLACHPRLWLRVERSI D RPGDTILIATGG VHSASNIQIT
Sbjct: 72 WRYLACHPRLWLRVERSIKDLSEPGVFPTIEAAVAAARPGDTILIATGG-VHSASNIQIT 131
Query: 229 KPLCLIGGGELPEETTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGC 288
KPLCLIGGGELPEETTLFC+RGSESALEFL TSKLSNLTVKAELGCCL+HRKGRLI+DGC
Sbjct: 132 KPLCLIGGGELPEETTLFCTRGSESALEFLSTSKLSNLTVKAELGCCLLHRKGRLIVDGC 191
Query: 289 VLQCESNPLDYLSCPIVCTASPDSLSSSSVKGGYTDGVSVSQTRIEGGAKAILTSEDLAL 348
VLQCESNPLDYLSCPIVCTASPD L SSVKGGYT GVSVS TRIEGGAKA+LTSEDL L
Sbjct: 192 VLQCESNPLDYLSCPIVCTASPDKLLPSSVKGGYTHGVSVSHTRIEGGAKAVLTSEDLTL 251
Query: 349 QHVRVIYARTALFFWFDVEHKL 357
QHVRVIYARTALFFWFDVE+KL
Sbjct: 252 QHVRVIYARTALFFWFDVEYKL 272
BLAST of Csor.00g301200 vs. TAIR 10
Match:
AT3G54480.1 (SKP1/ASK-interacting protein 5 )
HSP 1 Score: 244.6 bits (623), Expect = 1.2e-64
Identity = 137/256 (53.52%), Postives = 164/256 (64.06%), Query Frame = 0
Query: 123 INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRV 182
+NNLDDG L F + I + L+ WRYLACHPRLWLRV
Sbjct: 35 LNNLDDGCLMHILSF------------LSPIPDRYNTALVCHR---WRYLACHPRLWLRV 94
Query: 183 ERSINDF-------------VLQRPGDTILIATGGGVHSASNIQITKPLCLIGGGELPEE 242
+R + D RPGDTILI GG + SNIQI KPLCL+GGGE+P+E
Sbjct: 95 DRFVKDLSQPGVFLNIESAVSAARPGDTILIVAGGN-YRVSNIQIKKPLCLVGGGEIPDE 154
Query: 243 TTLFCSRGSESALEFLCTSKLSNLTVKAELGCCLVHRKGRLIIDGCVLQCESNPLDYLSC 302
TTL C+RGS+SALE L T KL+NLTVKAELGCCL+HR GRL IDGCVLQCE+NPLD+LSC
Sbjct: 155 TTLVCARGSDSALELLSTCKLANLTVKAELGCCLLHRSGRLTIDGCVLQCETNPLDHLSC 214
Query: 303 PIVCTASPDS----LSSSSVKGGYT-----DGVSVSQTRIEGGAKAILTSEDLALQHVRV 357
PIV TA + LS VK T + V+V QTRIEGGAKA+ T DL LQ VRV
Sbjct: 215 PIVSTAGDEDIENILSHVEVKETVTGKIKANSVTVLQTRIEGGAKAVSTRGDLVLQRVRV 274
BLAST of Csor.00g301200 vs. TAIR 10
Match:
AT3G54480.2 (SKP1/ASK-interacting protein 5 )
HSP 1 Score: 47.4 bits (111), Expect = 2.9e-05
Identity = 29/73 (39.73%), Postives = 36/73 (49.32%), Query Frame = 0
Query: 123 INNLDDGFRSSFLDFGYELVGLTSWKEIRKILEAIVKILMTFNSIWWRYLACHPRLWLRV 182
+NNLDDG L F + I + L+ WRYLACHPRLWLRV
Sbjct: 35 LNNLDDGCLMHILSF------------LSPIPDRYNTALVCHR---WRYLACHPRLWLRV 90
Query: 183 ERSINDFVLQRPG 196
+R + D L +PG
Sbjct: 95 DRFVKD--LSQPG 90
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q94FT2 | 1.7e-63 | 53.52 | F-box protein SKIP5 OS=Arabidopsis thaliana OX=3702 GN=SKIP5 PE=1 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
KAG6573804.1 | 3.52e-258 | 100.00 | F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
KAG6573807.1 | 1.05e-199 | 81.12 | F-box protein SKIP5, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022945754.1 | 3.21e-173 | 81.36 | F-box protein SKIP5-like [Cucurbita moschata] | [more] |
XP_023542059.1 | 3.22e-166 | 80.86 | F-box protein SKIP5-like [Cucurbita pepo subsp. pepo] | [more] |
XP_022966938.1 | 8.56e-126 | 75.38 | F-box protein SKIP5 isoform X2 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1G1V1 | 1.55e-173 | 81.36 | F-box protein SKIP5-like OS=Cucurbita moschata OX=3662 GN=LOC111449901 PE=4 SV=1 | [more] |
A0A6J1HTP2 | 4.14e-126 | 75.38 | F-box protein SKIP5 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ... | [more] |
A0A6J1HPC3 | 1.34e-122 | 72.36 | F-box protein SKIP5 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111466500 PE=4 ... | [more] |
A0A6J1CBW5 | 5.98e-115 | 85.64 | F-box protein SKIP5 OS=Momordica charantia OX=3673 GN=LOC111010147 PE=4 SV=1 | [more] |
A0A0A0KRR7 | 1.54e-112 | 84.65 | F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G623720 PE=4 ... | [more] |