Csor.00g299400 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g299400
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	tRNA 4-demethylwyosine synthase (AdoMet-dependent)
Location	Csor_Chr05: 1081086 .. 1081508 (-)
RNA-Seq Expression	Csor.00g299400
Synteny	Csor.00g299400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSinitialstart_codonintronterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAACGTTCCTTGGCATTCTGATGTAAAGTCTTTTTCTGAGGCTTTAGCTGCAAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCATTCATGTTGCGTTCTCTTGGCCAAAACTGACAAATTTAGAGTCGATGGGCAGTGGTTCACTTGGATAGATTATGAGAAATTCCATGACCTGGTTTGTATTGATGACAACTAATTTGCCATGAAACCTATGATGTTCAACCCCCTTCCTTTAACTTTTATCCTTCTCTAAAATTTTCAGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCGTGGGCTGTATATGGTGCTGACGAAGGTGGATTTGATCCTGTTCAATATCGATACCGGAAGGAGCGACATCATAGACCAAAACCCACATCCTGA

mRNA sequence

ATGGAGAACGTTCCTTGGCATTCTGATGTAAAGTCTTTTTCTGAGGCTTTAGCTGCAAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCATTCATGTTGCGTTCTCTTGGCCAAAACTGACAAATTTAGAGTCGATGGGCAGTGGTTCACTTGGATAGATTATGAGAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCGTGGGCTGTATATGGTGCTGACGAAGGTGGATTTGATCCTGTTCAATATCGATACCGGAAGGAGCGACATCATAGACCAAAACCCACATCCTGA

Coding sequence (CDS)

ATGGAGAACGTTCCTTGGCATTCTGATGTAAAGTCTTTTTCTGAGGCTTTAGCTGCAAAAAGTCAAGGGGAGTATGAAGTTGCTTGTGAGCATGTGCATTCATGTTGCGTTCTCTTGGCCAAAACTGACAAATTTAGAGTCGATGGGCAGTGGTTCACTTGGATAGATTATGAGAAATTCCATGACCTGGTGGCCTCTGGAAAACCTTTTGATAGCAAGGACTACATGGCTCCAACACCATCGTGGGCTGTATATGGTGCTGACGAAGGTGGATTTGATCCTGTTCAATATCGATACCGGAAGGAGCGACATCATAGACCAAAACCCACATCCTGA

Protein sequence

MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKFHDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS

Homology

[Close]

BLAST of Csor.00g299400 vs. ExPASy Swiss-Prot
Match: Q8RXN5 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis thaliana OX=3702 GN=TYW1 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 3.0e-51
Identity = 88/109 (80.73%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWH+DVK+FSEAL+ KS GEYEVACEH HSCCVLL +T+KF+VDG+WFTWIDYEKF
Sbjct: 534 MENVPWHTDVKAFSEALSLKSNGEYEVACEHAHSCCVLLGRTEKFKVDGKWFTWIDYEKF 593

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKP 110
           HDLVASG+PF S DYMA TPSWAVYGA EGGFDP Q RY+KER+H PKP
Sbjct: 594 HDLVASGEPFTSTDYMAQTPSWAVYGAQEGGFDPGQLRYKKERNHPPKP 642

[Close]

BLAST of Csor.00g299400 vs. ExPASy Swiss-Prot
Match: Q8H8N3 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Oryza sativa subsp. japonica OX=39947 GN=TYW1 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 5.9e-47
Identity = 82/105 (78.10%), Postives = 92/105 (87.62%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVK FSEALA KS G YEVACEH HSCCVLLAK DKF+++G+W TWIDY++F
Sbjct: 542 MENVPWHSDVKDFSEALALKSGGVYEVACEHAHSCCVLLAKVDKFKINGKWHTWIDYDRF 601

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHH 106
           H+LV SGKPF S+DYMA TPSWAVYGA+EGGFDP Q RY+KER H
Sbjct: 602 HELVTSGKPFRSQDYMALTPSWAVYGAEEGGFDPDQSRYKKERRH 646

[Close]

BLAST of Csor.00g299400 vs. ExPASy Swiss-Prot
Match: Q08C92 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Danio rerio OX=7955 GN=tyw1 PE=2 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.5e-26
Identity = 56/108 (51.85%), Postives = 73/108 (67.59%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           M NVPWH +V  F + L A    +YE+ACEH HS C+LLA   KF+VDG+W+TWIDYE+F
Sbjct: 616 MANVPWHEEVIYFVQQL-ANLLPDYEIACEHEHSNCLLLA-NHKFKVDGEWWTWIDYERF 675

Query: 61  HDLV------ASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKE 103
            +L+         K F + DYMA TPSWAV+GA E GFDP   R++++
Sbjct: 676 QELIQQYEESGGTKNFSAMDYMAKTPSWAVFGAGERGFDPTDTRFQRK 721

[Close]

BLAST of Csor.00g299400 vs. ExPASy Swiss-Prot
Match: Q8BJM7 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Mus musculus OX=10090 GN=Tyw1 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-23
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           M NVPWH +V  F   L      +YEVACEH HS C+L+    KF++DG+W+TWI+Y +F
Sbjct: 607 MANVPWHEEVVRFVREL-VDLLPDYEVACEHEHSNCLLIGH-KKFKIDGEWWTWINYSRF 666

Query: 61  HDLV------ASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKE 103
            +LV         K F S+DYMA TP WA++GA E GFDP   RY+++
Sbjct: 667 QELVLQYEESGGSKTFSSRDYMARTPQWALFGARERGFDPKDTRYQRK 712

[Close]

BLAST of Csor.00g299400 vs. ExPASy Swiss-Prot
Match: Q9NV66 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Homo sapiens OX=9606 GN=TYW1 PE=2 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 6.0e-23
Identity = 50/108 (46.30%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           M +VPWH +V  F   L      EYE+ACEH HS C+L+A   KF++ G+W+TWIDY +F
Sbjct: 618 MAHVPWHEEVVQFVHELVDLIP-EYEIACEHEHSNCLLIAHR-KFKIGGEWWTWIDYNRF 677

Query: 61  HDLV------ASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKE 103
            +L+         K F +KDYMA TP WA++GA E GFDP   R++++
Sbjct: 678 QELIQEYEDSGGSKTFSAKDYMARTPHWALFGASERGFDPKDTRHQRK 723

[Close]

BLAST of Csor.00g299400 vs. NCBI nr
Match: KAG6598439.1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 248 bits (632), Expect = 3.87e-83
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS
Sbjct: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111

[Close]

BLAST of Csor.00g299400 vs. NCBI nr
Match: XP_022997485.1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Cucurbita maxima])

HSP 1 Score: 244 bits (623), Expect = 3.05e-75
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 529 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 588

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQ RYRKERHHRPKPTS
Sbjct: 589 HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQSRYRKERHHRPKPTS 639

[Close]

BLAST of Csor.00g299400 vs. NCBI nr
Match: XP_023546392.1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244 bits (623), Expect = 3.05e-75
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 529 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 588

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQ RYRKERHHRPKPTS
Sbjct: 589 HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQSRYRKERHHRPKPTS 639

[Close]

BLAST of Csor.00g299400 vs. NCBI nr
Match: XP_022962153.1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Cucurbita moschata])

HSP 1 Score: 241 bits (614), Expect = 6.53e-74
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFR+DGQWFTWIDYEKF
Sbjct: 529 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRIDGQWFTWIDYEKF 588

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           H LVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQ RYRKERHHRPKPTS
Sbjct: 589 HALVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQSRYRKERHHRPKPTS 639

[Close]

BLAST of Csor.00g299400 vs. NCBI nr
Match: XP_038884961.1 (S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Benincasa hispida] >XP_038884963.1 S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Benincasa hispida])

HSP 1 Score: 240 bits (613), Expect = 9.36e-74
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 530 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 589

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYG+DEGGFDP Q RYRKERHHRPKPTS
Sbjct: 590 HDLVASGKPFDSKDYMAPTPSWAVYGSDEGGFDPNQSRYRKERHHRPKPTS 640

[Close]

BLAST of Csor.00g299400 vs. ExPASy TrEMBL
Match: A0A6J1K9S7 (tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucurbita maxima OX=3661 GN=LOC111492394 PE=3 SV=1)

HSP 1 Score: 244 bits (623), Expect = 1.48e-75
Identity = 110/111 (99.10%), Postives = 110/111 (99.10%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 529 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 588

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQ RYRKERHHRPKPTS
Sbjct: 589 HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQSRYRKERHHRPKPTS 639

[Close]

BLAST of Csor.00g299400 vs. ExPASy TrEMBL
Match: A0A6J1HDZ5 (tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucurbita moschata OX=3662 GN=LOC111462691 PE=3 SV=1)

HSP 1 Score: 241 bits (614), Expect = 3.16e-74
Identity = 108/111 (97.30%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFR+DGQWFTWIDYEKF
Sbjct: 529 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRIDGQWFTWIDYEKF 588

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           H LVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQ RYRKERHHRPKPTS
Sbjct: 589 HALVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQSRYRKERHHRPKPTS 639

[Close]

BLAST of Csor.00g299400 vs. ExPASy TrEMBL
Match: A0A5A7VC83 (tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G005790 PE=3 SV=1)

HSP 1 Score: 239 bits (610), Expect = 1.28e-73
Identity = 107/111 (96.40%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 531 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 590

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYG+DEGGFDP Q RYRKERHH+PKPTS
Sbjct: 591 HDLVASGKPFDSKDYMAPTPSWAVYGSDEGGFDPDQSRYRKERHHKPKPTS 641

[Close]

BLAST of Csor.00g299400 vs. ExPASy TrEMBL
Match: A0A0A0LPA4 (tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucumis sativus OX=3659 GN=Csa_2G361620 PE=3 SV=1)

HSP 1 Score: 238 bits (607), Expect = 3.49e-73
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDY+KF
Sbjct: 530 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYDKF 589

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDYMAPTPSWAVYG+DEGGFDP Q RYRKERHH+PKPTS
Sbjct: 590 HDLVASGKPFDSKDYMAPTPSWAVYGSDEGGFDPDQSRYRKERHHKPKPTS 640

[Close]

BLAST of Csor.00g299400 vs. ExPASy TrEMBL
Match: A0A1S3BAY2 (tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucumis melo OX=3656 GN=LOC103487965 PE=3 SV=1)

HSP 1 Score: 238 bits (606), Expect = 5.00e-73
Identity = 106/111 (95.50%), Postives = 109/111 (98.20%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF
Sbjct: 531 MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 590

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKPTS 111
           HDLVASGKPFDSKDY+APTPSWAVYG+DEGGFDP Q RYRKERHH+PKPTS
Sbjct: 591 HDLVASGKPFDSKDYIAPTPSWAVYGSDEGGFDPDQSRYRKERHHKPKPTS 641

[Close]

BLAST of Csor.00g299400 vs. TAIR 10
Match: AT1G75200.1 (flavodoxin family protein / radical SAM domain-containing protein )

HSP 1 Score: 202.2 bits (513), Expect = 2.2e-52
Identity = 88/109 (80.73%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 1   MENVPWHSDVKSFSEALAAKSQGEYEVACEHVHSCCVLLAKTDKFRVDGQWFTWIDYEKF 60
           MENVPWH+DVK+FSEAL+ KS GEYEVACEH HSCCVLL +T+KF+VDG+WFTWIDYEKF
Sbjct: 534 MENVPWHTDVKAFSEALSLKSNGEYEVACEHAHSCCVLLGRTEKFKVDGKWFTWIDYEKF 593

Query: 61  HDLVASGKPFDSKDYMAPTPSWAVYGADEGGFDPVQYRYRKERHHRPKP 110
           HDLVASG+PF S DYMA TPSWAVYGA EGGFDP Q RY+KER+H PKP
Sbjct: 594 HDLVASGEPFTSTDYMAQTPSWAVYGAQEGGFDPGQLRYKKERNHPPKP 642

The following BLAST results are available for this feature:

BLAST of Csor.00g299400 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RXN5	3.0e-51	80.73	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Arabidopsis...	[more]
Q8H8N3	5.9e-47	78.10	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase OS=Oryza sativ...	[more]
Q08C92	7.5e-26	51.85	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Danio ...	[more]
Q8BJM7	1.6e-23	48.15	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Mus mu...	[more]
Q9NV66	6.0e-23	46.30	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase TYW1 OS=Homo s...	[more]

BLAST of Csor.00g299400 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6598439.1	3.87e-83	100.00	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase, partial [Cucu...	[more]
XP_022997485.1	3.05e-75	99.10	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Cucurbita max...	[more]
XP_023546392.1	3.05e-75	99.10	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Cucurbita pep...	[more]
XP_022962153.1	6.53e-74	97.30	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Cucurbita mos...	[more]
XP_038884961.1	9.36e-74	97.30	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Benincasa his...	[more]

BLAST of Csor.00g299400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K9S7	1.48e-75	99.10	tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucurbita maxima OX=3661 G...	[more]
A0A6J1HDZ5	3.16e-74	97.30	tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucurbita moschata OX=3662...	[more]
A0A5A7VC83	1.28e-73	96.40	tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucumis melo var. makuwa O...	[more]
A0A0A0LPA4	3.49e-73	95.50	tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucumis sativus OX=3659 GN...	[more]
A0A1S3BAY2	5.00e-73	95.50	tRNA 4-demethylwyosine synthase (AdoMet-dependent) OS=Cucumis melo OX=3656 GN=LO...	[more]

BLAST of Csor.00g299400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75200.1	2.2e-52	80.73	flavodoxin family protein / radical SAM domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013917	tRNA wybutosine-synthesis	PFAM	PF08608	Wyosine_form	coord: 1..41 e-value: 9.9E-13 score: 48.2
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 1..54 e-value: 5.8E-10 score: 40.7
IPR034556	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	PANTHER	PTHR13930	S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE	coord: 1..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g299400.m01	Csor.00g299400.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008033	tRNA processing
biological_process	GO:0031591	wybutosine biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0010181	FMN binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0102521	tRNA-4-demethylwyosine synthase activity
molecular_function	GO:0003824	catalytic activity