Csor.00g298460 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g298460
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like
Location	Csor_Chr18: 2460249 .. 2460836 (+)
RNA-Seq Expression	Csor.00g298460
Synteny	Csor.00g298460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAACCCAACCACGAAAAGATTCCACGGAGGCCGGATCATCGTCGGCCACGGCGGTCGTCGAGACCCAGCACCACCAAGGGGCGGCGGCGCTCAGCCGCTACGAGTCTCAGAAGCGGCGAGACTGGAACACGTTCGGACAGTATCTAAAAAATCAAGCGCCGCCGGTTCCACTGTTCGAGTGCAACTGCAACCACGTGCTCGAATTCCTCCGCTACCTCGACCAGTTCGGAAAGACTAAGGTTCACTTACATGGGTGCGTGTTTTTCGGTCAGCCTGACCCACCTGCCCCTTGCACGTGTCCACTCCGCCAAGCGTGGGGCAGCCTTGATGCTCTCATCGGACGGCTTCGGGCGGCGTATGAGGAGCACGGCGGTTCGCCGGAATCAAACCCTTTTGGAAATGGAGCAATTCGTGTGTACTTGAGGGAAGTTAAGGAGTGTCAAGCTAAAGCTAGAGGGATTCCGTACAAGAAAAAGAAGAGGAAAAGAGCTCAATTCAAGGCTAATGACGACGGCGGTGGCGGCGGCGGCTGCGGCGGCGGGAACAACAATAACAACAACCAACCCATGAAGCATCTTGCTTGA

mRNA sequence

ATGTCAACCCAACCACGAAAAGATTCCACGGAGGCCGGATCATCGTCGGCCACGGCGGTCGTCGAGACCCAGCACCACCAAGGGGCGGCGGCGCTCAGCCGCTACGAGTCTCAGAAGCGGCGAGACTGGAACACGTTCGGACAGTATCTAAAAAATCAAGCGCCGCCGGTTCCACTGTTCGAGTGCAACTGCAACCACGTGCTCGAATTCCTCCGCTACCTCGACCAGTTCGGAAAGACTAAGGTTCACTTACATGGGTGCGTGTTTTTCGGTCAGCCTGACCCACCTGCCCCTTGCACGTGTCCACTCCGCCAAGCGTGGGGCAGCCTTGATGCTCTCATCGGACGGCTTCGGGCGGCGTATGAGGAGCACGGCGGTTCGCCGGAATCAAACCCTTTTGGAAATGGAGCAATTCGTGTGTACTTGAGGGAAGTTAAGGAGTGTCAAGCTAAAGCTAGAGGGATTCCGTACAAGAAAAAGAAGAGGAAAAGAGCTCAATTCAAGGCTAATGACGACGGCGGTGGCGGCGGCGGCTGCGGCGGCGGGAACAACAATAACAACAACCAACCCATGAAGCATCTTGCTTGA

Coding sequence (CDS)

ATGTCAACCCAACCACGAAAAGATTCCACGGAGGCCGGATCATCGTCGGCCACGGCGGTCGTCGAGACCCAGCACCACCAAGGGGCGGCGGCGCTCAGCCGCTACGAGTCTCAGAAGCGGCGAGACTGGAACACGTTCGGACAGTATCTAAAAAATCAAGCGCCGCCGGTTCCACTGTTCGAGTGCAACTGCAACCACGTGCTCGAATTCCTCCGCTACCTCGACCAGTTCGGAAAGACTAAGGTTCACTTACATGGGTGCGTGTTTTTCGGTCAGCCTGACCCACCTGCCCCTTGCACGTGTCCACTCCGCCAAGCGTGGGGCAGCCTTGATGCTCTCATCGGACGGCTTCGGGCGGCGTATGAGGAGCACGGCGGTTCGCCGGAATCAAACCCTTTTGGAAATGGAGCAATTCGTGTGTACTTGAGGGAAGTTAAGGAGTGTCAAGCTAAAGCTAGAGGGATTCCGTACAAGAAAAAGAAGAGGAAAAGAGCTCAATTCAAGGCTAATGACGACGGCGGTGGCGGCGGCGGCTGCGGCGGCGGGAACAACAATAACAACAACCAACCCATGAAGCATCTTGCTTGA

Protein sequence

MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCGGGNNNNNNQPMKHLA

Homology

[Close]

BLAST of Csor.00g298460 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.9e-67
Identity = 118/158 (74.68%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 19  AVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFG 78
           +++E+   +     SRYESQKRRDWNTFGQYLKNQ PPVP+  C+CNHVL+FLRYLDQFG
Sbjct: 10  SLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFG 69

Query: 79  KTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAI 138
           KTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PE+NPF +GAI
Sbjct: 70  KTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAI 129

Query: 139 RVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGG 177
           RVYLREV+ECQAKARGIPYKKKK+K    K   + GGG
Sbjct: 130 RVYLREVRECQAKARGIPYKKKKKK----KPTPEMGGG 163

[Close]

BLAST of Csor.00g298460 vs. ExPASy Swiss-Prot
Match: B8AIK3 (Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 28  GAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGC 87
           G A  SRYESQKRRDW TFGQYL+N  PP+ L  C+  HVLEFLRYLDQFGKTKVH HGC
Sbjct: 17  GTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGC 76

Query: 88  VFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKE 147
            FFG P PPAPC CPLRQAWGSLDAL+GRLRAA+EEHGG PESNPFG  A+R+YLR++++
Sbjct: 77  PFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRD 136

Query: 148 CQAKARGIPYKKKKRKRA 166
            Q+KARGI Y+KK+RKRA
Sbjct: 137 TQSKARGIAYEKKRRKRA 154

[Close]

BLAST of Csor.00g298460 vs. ExPASy Swiss-Prot
Match: Q0E3M2 (Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.8e-59
Identity = 103/138 (74.64%), Postives = 117/138 (84.78%), Query Frame = 0


Query: 28  GAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFGKTKVHLHGC 87
           G A  SRYESQKRRDW TFGQYL+N  PP+ L  C+  HVLEFLRYLDQFGKTKVH HGC
Sbjct: 17  GTARPSRYESQKRRDWQTFGQYLRNHRPPLELSRCSGAHVLEFLRYLDQFGKTKVHAHGC 76

Query: 88  VFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAIRVYLREVKE 147
            FFG P PPAPC CPLRQAWGSLDAL+GRLRAA+EEHGG PESNPFG  A+R+YLR++++
Sbjct: 77  PFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEEHGGRPESNPFGARAVRLYLRDIRD 136

Query: 148 CQAKARGIPYKKKKRKRA 166
            Q+KARGI Y+KK+RKRA
Sbjct: 137 TQSKARGIAYEKKRRKRA 154

[Close]

BLAST of Csor.00g298460 vs. ExPASy Swiss-Prot
Match: Q941W1 (Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.4e-59
Identity = 120/192 (62.50%), Postives = 133/192 (69.27%), Query Frame = 0


Query: 5   PRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNC 64
           P   S  AG + A A       Q  A LSRYESQKRRDWNTF QYL+N  PP+ L  C+ 
Sbjct: 6   PGPSSAAAGGAPAVAAAP----QPPAQLSRYESQKRRDWNTFLQYLRNHRPPLTLARCSG 65

Query: 65  NHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH 124
            HV+EFLRYLDQFGKTKVH  GC F+GQP PP PC CPLRQAWGSLDALIGRLRAAYEE 
Sbjct: 66  AHVIEFLRYLDQFGKTKVHASGCAFYGQPSPPGPCPCPLRQAWGSLDALIGRLRAAYEES 125

Query: 125 GGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ--------------FKAN 183
           GG+PESNPF   A+R+YLREV++ QAKARGIPY+KKKRKR+Q                A 
Sbjct: 126 GGTPESNPFAARAVRIYLREVRDSQAKARGIPYEKKKRKRSQAAQPAGVEPSGSSSAAAA 185

[Close]

BLAST of Csor.00g298460 vs. ExPASy Swiss-Prot
Match: Q9SN52 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LSH9 PE=1 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 2.4e-59
Identity = 112/163 (68.71%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 5   PRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNC 64
           P KD  +  SSS+    +    Q    LSRYESQKRRDWNTF QYLK+Q PP+ + + + 
Sbjct: 8   PTKDPPDHPSSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 67

Query: 65  NHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH 124
            HVL FLRYLDQFGKTKVH   CVFFGQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH
Sbjct: 68  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 127

Query: 125 -GGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ 167
            GGSP++NPF NG+IRV+LREV+E QAKARGIPY+KKKR++ +
Sbjct: 128 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKTK 170

[Close]

BLAST of Csor.00g298460 vs. NCBI nr
Match: KAG6573307.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7012476.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 406 bits (1043), Expect = 4.54e-143
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180

Query: 181 GGNNNNNNQPMKHLA 195
           GGNNNNNNQPMKHLA
Sbjct: 181 GGNNNNNNQPMKHLA 195

[Close]

BLAST of Csor.00g298460 vs. NCBI nr
Match: XP_023541966.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 397 bits (1021), Expect = 1.07e-139
Identity = 192/196 (97.96%), Postives = 194/196 (98.98%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSS TAV++TQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSTTAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDG-GGGGGC 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDG GGGGGC
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGGGC 180

Query: 181 GGGNNNNNNQPMKHLA 195
           GGGNNNNNNQPMKHLA
Sbjct: 181 GGGNNNNNNQPMKHLA 196

[Close]

BLAST of Csor.00g298460 vs. NCBI nr
Match: XP_022955058.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata])

HSP 1 Score: 391 bits (1004), Expect = 3.75e-137
Identity = 190/195 (97.44%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSSATAV++TQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDG GGGG  
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGG-- 180

Query: 181 GGNNNNNNQPMKHLA 195
           GGNNNNNNQPMKHLA
Sbjct: 181 GGNNNNNNQPMKHLA 193

[Close]

BLAST of Csor.00g298460 vs. NCBI nr
Match: XP_022994266.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 385 bits (990), Expect = 5.12e-135
Identity = 186/195 (95.38%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSS  AV++TQ+HQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSTAAVIDTQNHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ KANDDGGGGGGCG
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQLKANDDGGGGGGCG 180

Query: 181 GGNNNNNNQPMKHLA 195
           G NNNN  QPMKHLA
Sbjct: 181 GSNNNN--QPMKHLA 193

[Close]

BLAST of Csor.00g298460 vs. NCBI nr
Match: XP_008465553.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_016903415.1 PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo])

HSP 1 Score: 321 bits (823), Expect = 9.99e-110
Identity = 160/194 (82.47%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS T    T      AALSRYESQKRRDWNTFGQYLKNQ PPV L 
Sbjct: 1   MSTEARKDPTEAGSSSRTTTTTT------AALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDIN----- 180

Query: 181 GGNNNNNNQPMKHL 194
             NNNNN QP+KHL
Sbjct: 181 --NNNNNKQPIKHL 181

[Close]

BLAST of Csor.00g298460 vs. ExPASy TrEMBL
Match: A0A6J1GSW5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111457135 PE=3 SV=1)

HSP 1 Score: 391 bits (1004), Expect = 1.82e-137
Identity = 190/195 (97.44%), Postives = 192/195 (98.46%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSSATAV++TQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSATAVLDTQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDG GGGG  
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGAGGGG-- 180

Query: 181 GGNNNNNNQPMKHLA 195
           GGNNNNNNQPMKHLA
Sbjct: 181 GGNNNNNNQPMKHLA 193

[Close]

BLAST of Csor.00g298460 vs. ExPASy TrEMBL
Match: A0A6J1JYM4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111490052 PE=3 SV=1)

HSP 1 Score: 385 bits (990), Expect = 2.48e-135
Identity = 186/195 (95.38%), Postives = 189/195 (96.92%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MSTQPRKDSTEAGSSS  AV++TQ+HQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF
Sbjct: 1   MSTQPRKDSTEAGSSSTAAVIDTQNHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ KANDDGGGGGGCG
Sbjct: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQLKANDDGGGGGGCG 180

Query: 181 GGNNNNNNQPMKHLA 195
           G NNNN  QPMKHLA
Sbjct: 181 GSNNNN--QPMKHLA 193

[Close]

BLAST of Csor.00g298460 vs. ExPASy TrEMBL
Match: A0A1S4E614 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC103503180 PE=3 SV=1)

HSP 1 Score: 321 bits (823), Expect = 4.84e-110
Identity = 160/194 (82.47%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS T    T      AALSRYESQKRRDWNTFGQYLKNQ PPV L 
Sbjct: 1   MSTEARKDPTEAGSSSRTTTTTT------AALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDIN----- 180

Query: 181 GGNNNNNNQPMKHL 194
             NNNNN QP+KHL
Sbjct: 181 --NNNNNKQPIKHL 181

[Close]

BLAST of Csor.00g298460 vs. ExPASy TrEMBL
Match: A0A5A7UU18 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002260 PE=3 SV=1)

HSP 1 Score: 321 bits (822), Expect = 7.11e-110
Identity = 160/194 (82.47%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLF 60
           MST+ RKD TEAGSSS T    T      AALSRYESQKRRDWNTFGQYLKNQ PPV L 
Sbjct: 1   MSTEARKDPTEAGSSSRTTTTTT------AALSRYESQKRRDWNTFGQYLKNQTPPVSLS 60

Query: 61  ECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120
           +CNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA
Sbjct: 61  QCNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAA 120

Query: 121 YEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGGGGCG 180
           YEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR Q K+NDD        
Sbjct: 121 YEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRTQLKSNDDDINN---- 180

Query: 181 GGNNNNNNQPMKHL 194
             NNNNN QP+KHL
Sbjct: 181 --NNNNNKQPIKHL 182

[Close]

BLAST of Csor.00g298460 vs. ExPASy TrEMBL
Match: A0A6J1KGX1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111495158 PE=3 SV=1)

HSP 1 Score: 311 bits (796), Expect = 6.52e-106
Identity = 148/175 (84.57%), Postives = 157/175 (89.71%), Query Frame = 0


Query: 1   MSTQPRKDSTEAGSSSATAV---VETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPV 60
           MST+ RKDSTEAGSSS TA          Q +AALSRYESQK+RDWNTFGQYLKNQ PPV
Sbjct: 1   MSTEGRKDSTEAGSSSRTAAGSSAAADQQQASAALSRYESQKKRDWNTFGQYLKNQTPPV 60

Query: 61  PLFECNCNHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL 120
            L +CNCNHV+EF+RYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL
Sbjct: 61  ALSQCNCNHVVEFMRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRL 120

Query: 121 RAAYEEHGGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQFKANDD 172
           RAAYEEHGGSPE+NPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR+Q K ND+
Sbjct: 121 RAAYEEHGGSPETNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRSQLKGNDE 175

[Close]

BLAST of Csor.00g298460 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-68
Identity = 118/158 (74.68%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 19  AVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFG 78
           +++E+   +     SRYESQKRRDWNTFGQYLKNQ PPVP+  C+CNHVL+FLRYLDQFG
Sbjct: 10  SLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFG 69

Query: 79  KTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAI 138
           KTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PE+NPF +GAI
Sbjct: 70  KTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAI 129

Query: 139 RVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGG 177
           RVYLREV+ECQAKARGIPYKKKK+K    K   + GGG
Sbjct: 130 RVYLREVRECQAKARGIPYKKKKKK----KPTPEMGGG 163

[Close]

BLAST of Csor.00g298460 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.0 bits (650), Expect = 4.9e-68
Identity = 118/158 (74.68%), Postives = 136/158 (86.08%), Query Frame = 0


Query: 19  AVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVLEFLRYLDQFG 78
           +++E+   +     SRYESQKRRDWNTFGQYLKNQ PPVP+  C+CNHVL+FLRYLDQFG
Sbjct: 10  SLMESSGSEPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVLDFLRYLDQFG 69

Query: 79  KTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSPESNPFGNGAI 138
           KTKVH+ GC+F+GQP+PPAPCTCPLRQAWGSLDALIGRLRAAYEE+GG PE+NPF +GAI
Sbjct: 70  KTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPPETNPFASGAI 129

Query: 139 RVYLREVKECQAKARGIPYKKKKRKRAQFKANDDGGGG 177
           RVYLREV+ECQAKARGIPYKKKK+K    K   + GGG
Sbjct: 130 RVYLREVRECQAKARGIPYKKKKKK----KPTPEMGGG 163

[Close]

BLAST of Csor.00g298460 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 229.9 bits (585), Expect = 1.7e-60
Identity = 112/163 (68.71%), Postives = 130/163 (79.75%), Query Frame = 0


Query: 5   PRKDSTEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNC 64
           P KD  +  SSS+    +    Q    LSRYESQKRRDWNTF QYLK+Q PP+ + + + 
Sbjct: 8   PTKDPPDHPSSSSNHHKQPLPPQPQQPLSRYESQKRRDWNTFVQYLKSQNPPLMMSQFDY 67

Query: 65  NHVLEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEH 124
            HVL FLRYLDQFGKTKVH   CVFFGQPDPP PCTCPL+QAWGSLDALIGRLRAAYEEH
Sbjct: 68  THVLSFLRYLDQFGKTKVHHQACVFFGQPDPPGPCTCPLKQAWGSLDALIGRLRAAYEEH 127

Query: 125 -GGSPESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKRAQ 167
            GGSP++NPF NG+IRV+LREV+E QAKARGIPY+KKKR++ +
Sbjct: 128 GGGSPDTNPFANGSIRVHLREVRESQAKARGIPYRKKKRRKTK 170

[Close]

BLAST of Csor.00g298460 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 227.6 bits (579), Expect = 8.4e-60
Identity = 109/156 (69.87%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 9   STEAGSSSATAVVETQHHQGAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHVL 68
           +T + SSS++         G   LSRYE+QKRRDWNTFGQYL+N  PP+ L  C+  HVL
Sbjct: 29  TTSSSSSSSSG------GSGTNQLSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVL 88

Query: 69  EFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGSP 128
           EFLRYLDQFGKTKVH H C FFG P+PPAPC CPLRQAWGSLDALIGRLRAA+EE+GGSP
Sbjct: 89  EFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGRLRAAFEENGGSP 148

Query: 129 ESNPFGNGAIRVYLREVKECQAKARGIPYKKKKRKR 165
           E+NPFG  A+R+YLREV++ QAKARGI Y+KKKRKR
Sbjct: 149 ETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKR 178

[Close]

BLAST of Csor.00g298460 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-58
Identity = 111/179 (62.01%), Postives = 133/179 (74.30%), Query Frame = 0


Query: 13  GSSSATAVVETQHHQ-----GAAALSRYESQKRRDWNTFGQYLKNQAPPVPLFECNCNHV 72
           GSS   +  + Q HQ        ALSRYESQKRRDWNTF QYL+NQ PPV + +C  NH+
Sbjct: 14  GSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQPPVHISQCGSNHI 73

Query: 73  LEFLRYLDQFGKTKVHLHGCVFFGQPDPPAPCTCPLRQAWGSLDALIGRLRAAYEEHGGS 132
           L+FL+YLDQFGKTKVH+HGCVFFGQ +P   C CPL+QAWGSLDALIGRLRAA+EE+GG 
Sbjct: 74  LDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALIGRLRAAFEENGGL 133

Query: 133 PESNPFGNGAIRVYLREVKECQAKARGIPYK--KKKRKRAQFKANDDGGGGGGCGGGNN 185
           PE NPF  G IRV+LREV++ QAKARG+PYK  KK++KR   K++D   G  G    +N
Sbjct: 134 PERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMKSHDGEDGTTGTSSSSN 192

The following BLAST results are available for this feature:

BLAST of Csor.00g298460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	6.9e-67	74.68	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
B8AIK3	1.8e-59	74.64	Protein G1-like1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05993 PE=3 SV=1	[more]
Q0E3M2	1.8e-59	74.64	Protein G1-like1 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L1 PE=1 SV=1	[more]
Q941W1	2.4e-59	62.50	Protein G1-like7 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L7 PE=1 SV=1	[more]
Q9SN52	2.4e-59	68.71	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 9 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Csor.00g298460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573307.1	4.54e-143	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10, partial [Cucurbita argyrosperma sub...	[more]
XP_023541966.1	1.07e-139	97.96	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955058.1	3.75e-137	97.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita moschata]	[more]
XP_022994266.1	5.12e-135	95.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]
XP_008465553.1	9.99e-110	82.47	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucumis melo] >XP_0...	[more]

BLAST of Csor.00g298460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GSW5	1.82e-137	97.44	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1JYM4	2.48e-135	95.38	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A1S4E614	4.84e-110	82.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7UU18	7.11e-110	82.47	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucumis melo var. makuwa OX=...	[more]
A0A6J1KGX1	6.52e-106	84.57	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of Csor.00g298460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	4.9e-68	74.68	Protein of unknown function (DUF640)	[more]
AT2G42610.2	4.9e-68	74.68	Protein of unknown function (DUF640)	[more]
AT4G18610.1	1.7e-60	68.71	Protein of unknown function (DUF640)	[more]
AT3G23290.2	8.4e-60	69.87	Protein of unknown function (DUF640)	[more]
AT1G78815.1	1.2e-58	62.01	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 26..147 e-value: 4.9E-63 score: 210.9
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 34..161 score: 77.772079
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 157..195
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..195
None	No IPR available	PANTHER	PTHR31165:SF9	PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6	coord: 4..172
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 4..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g298460.m01	Csor.00g298460.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus