Csor.00g298320 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g298320
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr18: 2547447 .. 2547764 (-)
RNA-Seq ExpressionCsor.00g298320
SyntenyCsor.00g298320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAAGCCAACAGGTTATAGAGAGTTTAGATTCTCTCTGGTTCTTCGCCACCGTATTTTCCAACAGAGCGCCGCCGCCGGTCGTCGAAAAGCTGGAAATTCCGGCTCAAAACGACGCCGTTAAGCCTCCCGGAGAAGAAATTTCGACACCCATTGTAGATGTGAGTTATAGTGTGAAGGAGATTTGTGAATGTTGGGTGGTTCAAGAGAGAATTAGAAATGAGTGGAAGAAGAAGGTGTGTGGCTATGAAGATAGTACAATTATGAAAGAGCATATAAGATTGTGGGCTTATGCTGTGGCTTCTACTGTTAGATGA

mRNA sequence

ATGGAAAGCCAACAGGTTATAGAGAGTTTAGATTCTCTCTGGTTCTTCGCCACCGTATTTTCCAACAGAGCGCCGCCGCCGGTCGTCGAAAAGCTGGAAATTCCGGCTCAAAACGACGCCGTTAAGCCTCCCGGAGAAGAAATTTCGACACCCATTGTAGATGTGAGTTATAGTGTGAAGGAGATTTGTGAATGTTGGGTGGTTCAAGAGAGAATTAGAAATGAGTGGAAGAAGAAGGTGTGTGGCTATGAAGATAGTACAATTATGAAAGAGCATATAAGATTGTGGGCTTATGCTGTGGCTTCTACTGTTAGATGA

Coding sequence (CDS)

ATGGAAAGCCAACAGGTTATAGAGAGTTTAGATTCTCTCTGGTTCTTCGCCACCGTATTTTCCAACAGAGCGCCGCCGCCGGTCGTCGAAAAGCTGGAAATTCCGGCTCAAAACGACGCCGTTAAGCCTCCCGGAGAAGAAATTTCGACACCCATTGTAGATGTGAGTTATAGTGTGAAGGAGATTTGTGAATGTTGGGTGGTTCAAGAGAGAATTAGAAATGAGTGGAAGAAGAAGGTGTGTGGCTATGAAGATAGTACAATTATGAAAGAGCATATAAGATTGTGGGCTTATGCTGTGGCTTCTACTGTTAGATGA

Protein sequence

MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPIVDVSYSVKEICECWVVQERIRNEWKKKVCGYEDSTIMKEHIRLWAYAVASTVR
Homology
BLAST of Csor.00g298320 vs. NCBI nr
Match: KAG6573321.1 (hypothetical protein SDJN03_27208, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 217 bits (552), Expect = 4.01e-71
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPIVDVSYSVK 60
           MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPIVDVSYSVK
Sbjct: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPIVDVSYSVK 60

Query: 61  EICECWVVQERIRNEWKKKVCGYEDSTIMKEHIRLWAYAVASTVR 105
           EICECWVVQERIRNEWKKKVCGYEDSTIMKEHIRLWAYAVASTVR
Sbjct: 61  EICECWVVQERIRNEWKKKVCGYEDSTIMKEHIRLWAYAVASTVR 105

BLAST of Csor.00g298320 vs. NCBI nr
Match: KAG7012490.1 (hypothetical protein SDJN02_25242, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 175 bits (444), Expect = 9.05e-55
Identity = 83/85 (97.65%), Postives = 85/85 (100.00%), Query Frame = 0

Query: 21  SNRAPPPVVEKLEIPAQNDAVKPPGEEISTPIVDVSYSVKEICECWVVQERIRNEWKKKV 80
           +NRAPPPVVEKLEIPAQNDAV+PPGEEISTPIVDVSYSVKEICECWVVQERIRNEWKKKV
Sbjct: 12  ANRAPPPVVEKLEIPAQNDAVEPPGEEISTPIVDVSYSVKEICECWVVQERIRNEWKKKV 71

Query: 81  CGYEDSTIMKEHIRLWAYAVASTVR 105
           CGYEDSTIMKEHIRLWAYAVASTVR
Sbjct: 72  CGYEDSTIMKEHIRLWAYAVASTVR 96

BLAST of Csor.00g298320 vs. NCBI nr
Match: XP_022927166.1 (uncharacterized protein LOC111434099 [Cucurbita moschata])

HSP 1 Score: 114 bits (285), Expect = 1.12e-29
Identity = 71/168 (42.26%), Postives = 87/168 (51.79%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPI-------- 60
           ME QQV+++LDSLWFFATVFSNR PPPVV+K   P Q+D V+PPG EI+TPI        
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPVVQK---PTQHDFVEPPGGEIATPIFQNQQNVG 60

Query: 61  ---------------------------------------------VDVSYSVKEICECWV 105
                                                        +D+S +VKEICECW+
Sbjct: 61  EERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCLGQRRKIVGEMDLSDAVKEICECWL 120

BLAST of Csor.00g298320 vs. NCBI nr
Match: XP_038895160.1 (uncharacterized protein LOC120083464 [Benincasa hispida])

HSP 1 Score: 111 bits (278), Expect = 1.25e-28
Identity = 71/164 (43.29%), Postives = 85/164 (51.83%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKL-EIPAQNDAVKPPGEEISTPI------- 60
           ME QQV+E+ DSLWFFATVFSNR PPP    + E P QND V+PPGEEI+TP+       
Sbjct: 1   MEGQQVLENWDSLWFFATVFSNRTPPPPPPPVVENPTQNDFVEPPGEEIATPLTPNEQNN 60

Query: 61  -------------------------------------------VDVSYSVKEICECWVVQ 105
                                                      +D+SY+VKEICECW+ +
Sbjct: 61  VGDEKKIENGGGFGIKTEEKEQRRKNRGRRCWGLEQRRKIVGEMDLSYAVKEICECWLFE 120

BLAST of Csor.00g298320 vs. NCBI nr
Match: KAG7019562.1 (hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 109 bits (272), Expect = 1.10e-27
Identity = 71/170 (41.76%), Postives = 87/170 (51.18%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPP--VVEKLEIPAQNDAVKPPGEEISTPI------ 60
           ME QQV+++LDSLWFFATVFSNR PPP  VV+K   P Q+D V+PPG EI+TPI      
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPPPVVQK---PTQHDFVEPPGGEIATPIFQNQQN 60

Query: 61  -----------------------------------------------VDVSYSVKEICEC 105
                                                          +D+S +VKEICEC
Sbjct: 61  VGEERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCLGQRRKIVGEMDLSDAVKEICEC 120

BLAST of Csor.00g298320 vs. ExPASy TrEMBL
Match: A0A6J1EGY0 (uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC111434099 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 5.44e-30
Identity = 71/168 (42.26%), Postives = 87/168 (51.79%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPI-------- 60
           ME QQV+++LDSLWFFATVFSNR PPPVV+K   P Q+D V+PPG EI+TPI        
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNRTPPPVVQK---PTQHDFVEPPGGEIATPIFQNQQNVG 60

Query: 61  ---------------------------------------------VDVSYSVKEICECWV 105
                                                        +D+S +VKEICECW+
Sbjct: 61  EERNIVDEKTNETGGGLGLIITEERRKSRGRRWGCLGQRRKIVGEMDLSDAVKEICECWL 120

BLAST of Csor.00g298320 vs. ExPASy TrEMBL
Match: A0A5A7UQZ2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold96G002450 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 8.74e-28
Identity = 71/151 (47.02%), Postives = 81/151 (53.64%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPI-------- 60
           ME QQV E+ DSLWFF+TVFSNR PP VVEK   P QND V+P GEEI+TPI        
Sbjct: 1   MEGQQVFENFDSLWFFSTVFSNRTPP-VVEK---PIQNDFVEPLGEEIATPITRNEENDV 60

Query: 61  ------------------------------------VDVSYSVKEICECWVVQE-RIRNE 105
                                               +D+SY+VKEICECW  +  RI   
Sbjct: 61  GEEKEMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIGGG 120

BLAST of Csor.00g298320 vs. ExPASy TrEMBL
Match: A0A1S3B8X4 (uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 8.74e-28
Identity = 71/151 (47.02%), Postives = 81/151 (53.64%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPI-------- 60
           ME QQV E+ DSLWFF+TVFSNR PP VVEK   P QND V+P GEEI+TPI        
Sbjct: 1   MEGQQVFENFDSLWFFSTVFSNRTPP-VVEK---PIQNDFVEPLGEEIATPITRNEENDV 60

Query: 61  ------------------------------------VDVSYSVKEICECWVVQE-RIRNE 105
                                               +D+SY+VKEICECW  +  RI   
Sbjct: 61  GEEKEMETEEMEEKRRKNRGRRSWGLEQRRKFVVGEIDLSYAVKEICECWSFEVMRIGGG 120

BLAST of Csor.00g298320 vs. ExPASy TrEMBL
Match: A0A0A0LX63 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470250 PE=4 SV=1)

HSP 1 Score: 106 bits (264), Expect = 5.00e-27
Identity = 71/151 (47.02%), Postives = 80/151 (52.98%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPPPVVEKLEIPAQNDAVKPPGEEISTPI-------- 60
           ME QQV+E+ DSLWFFATVFSNR PP VV K   P QND V   GEEI+TPI        
Sbjct: 1   MEGQQVLENFDSLWFFATVFSNRTPP-VVGK---PIQNDFVGSLGEEIATPITRNEENNV 60

Query: 61  ------------------------------------VDVSYSVKEICECWVVQE-RIRN- 105
                                               +D+SY+VKEICECW  +E RI   
Sbjct: 61  CEAKEMETEEREEKRRKNRGGRSWGLEQRKKFIVGEIDLSYAVKEICECWSFEEMRIGGG 120

BLAST of Csor.00g298320 vs. ExPASy TrEMBL
Match: A0A6J1KF61 (uncharacterized protein LOC111495257 OS=Cucurbita maxima OX=3661 GN=LOC111495257 PE=4 SV=1)

HSP 1 Score: 103 bits (257), Expect = 1.12e-25
Identity = 69/175 (39.43%), Postives = 86/175 (49.14%), Query Frame = 0

Query: 1   MESQQVIESLDSLWFFATVFSNRAPP-------PVVEKLEIPAQNDAVKPPGEEISTPI- 60
           ME QQV+++LDSLWFFATVFSN+ PP       PVV+K   P +ND V+ PG EI+TPI 
Sbjct: 1   MEDQQVLQNLDSLWFFATVFSNKMPPAPPSPPTPVVQK---PTENDFVELPGGEIATPIF 60

Query: 61  ----------------------------------------------------VDVSYSVK 105
                                                               +D+S +VK
Sbjct: 61  QNQQNVGDERNIVDEKTNETGGGFGSIITEERRKSRGRRWGCLRQRREIVGEMDLSDAVK 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6573321.14.01e-71100.00hypothetical protein SDJN03_27208, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7012490.19.05e-5597.65hypothetical protein SDJN02_25242, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022927166.11.12e-2942.26uncharacterized protein LOC111434099 [Cucurbita moschata][more]
XP_038895160.11.25e-2843.29uncharacterized protein LOC120083464 [Benincasa hispida][more]
KAG7019562.11.10e-2741.76hypothetical protein SDJN02_18523, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
A0A6J1EGY05.44e-3042.26uncharacterized protein LOC111434099 OS=Cucurbita moschata OX=3662 GN=LOC1114340... [more]
A0A5A7UQZ28.74e-2847.02Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A1S3B8X48.74e-2847.02uncharacterized protein LOC103487056 OS=Cucumis melo OX=3656 GN=LOC103487056 PE=... [more]
A0A0A0LX635.00e-2747.02Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G470250 PE=4 SV=1[more]
A0A6J1KF611.12e-2539.43uncharacterized protein LOC111495257 OS=Cucurbita maxima OX=3661 GN=LOC111495257... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33785:SF8SUBFAMILY NOT NAMEDcoord: 1..34
coord: 53..105
NoneNo IPR availablePANTHERPTHR33785FAMILY NOT NAMEDcoord: 1..34
coord: 53..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g298320.m01Csor.00g298320.m01mRNA