Csor.00g297010 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g297010
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	heavy metal-associated isoprenylated plant protein 39-like
Location	Csor_Chr18: 3773064 .. 3773363 (+)
RNA-Seq Expression	Csor.00g297010
Synteny	Csor.00g297010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglestart_codonpolypeptidestop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCCGACCCGAAAGAGAACAAGATTACAGTGATTGGAACGGCTGACCCGATTGAGATCGTTGGAAAAGTAAGAAAGGTTTGGCCCTCCGCTTACATTATTAGCGTAGGGCCAGAGAAAGAAGAACCGAAGAAAGTAGAGCCGAAGAAAGAAGAGACGAAGAAACAAGAACCTCAACCCAAAGTCGAGCAGATTGATTGGGCTAAGGCTTACCCAAGCTTTCATTCGTACCCCATAACTCATTACTATCATCCATATCGAGAAGAAGACAACCCAAATGCCTGTGTTATCTTCTAA

mRNA sequence

ATGGCAGCCGACCCGAAAGAGAACAAGATTACAGTGATTGGAACGGCTGACCCGATTGAGATCGTTGGAAAAGTAAGAAAGGTTTGGCCCTCCGCTTACATTATTAGCGTAGGGCCAGAGAAAGAAGAACCGAAGAAAGTAGAGCCGAAGAAAGAAGAGACGAAGAAACAAGAACCTCAACCCAAAGTCGAGCAGATTGATTGGGCTAAGGCTTACCCAAGCTTTCATTCGTACCCCATAACTCATTACTATCATCCATATCGAGAAGAAGACAACCCAAATGCCTGTGTTATCTTCTAA

Coding sequence (CDS)

ATGGCAGCCGACCCGAAAGAGAACAAGATTACAGTGATTGGAACGGCTGACCCGATTGAGATCGTTGGAAAAGTAAGAAAGGTTTGGCCCTCCGCTTACATTATTAGCGTAGGGCCAGAGAAAGAAGAACCGAAGAAAGTAGAGCCGAAGAAAGAAGAGACGAAGAAACAAGAACCTCAACCCAAAGTCGAGCAGATTGATTGGGCTAAGGCTTACCCAAGCTTTCATTCGTACCCCATAACTCATTACTATCATCCATATCGAGAAGAAGACAACCCAAATGCCTGTGTTATCTTCTAA

Protein sequence

MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQPKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF

Homology

[Close]

BLAST of Csor.00g297010 vs. ExPASy Swiss-Prot
Match: O03982 (Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX=3702 GN=HIPP39 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.2e-11
Identity = 53/146 (36.30%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGP-------EKEEPKK------- 60
           +A D KE K+TVIGT DP+ +V K+RK WP   I+ VGP       +KEEPKK       
Sbjct: 32  IAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEEPKKEGGGEPP 91

Query: 61  ---------------VEPKKEETKKQ---------------EPQPKV----EQIDWAKAY 99
                            PKKEE KK+               +PQP V      ++  KAY
Sbjct: 92  KKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAY 151

[Close]

BLAST of Csor.00g297010 vs. NCBI nr
Match: KAG6573451.1 (hypothetical protein SDJN03_27338, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 202 bits (513), Expect = 2.31e-65
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1  MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
          MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ
Sbjct: 1  MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60

Query: 61 PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF 99
          PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF
Sbjct: 61 PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF 99

[Close]

BLAST of Csor.00g297010 vs. NCBI nr
Match: KAG7012598.1 (hypothetical protein SDJN02_25350, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 198 bits (504), Expect = 5.45e-64
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 0


Query: 1  MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
          MAADPKE KITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ
Sbjct: 1  MAADPKEKKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60

Query: 61 PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF 99
          PKVEQIDWAKAYP+FHSYPITHYYHPYREEDNPNACVIF
Sbjct: 61 PKVEQIDWAKAYPTFHSYPITHYYHPYREEDNPNACVIF 99

[Close]

BLAST of Csor.00g297010 vs. NCBI nr
Match: XP_023542144.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 181 bits (458), Expect = 1.67e-56
Identity = 90/99 (90.91%), Postives = 93/99 (93.94%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
           MAADPKENKITVIGTADP+EIVGKVRKVWPSAYIISVGP+KEEPKKVEPKK     QEPQ
Sbjct: 40  MAADPKENKITVIGTADPVEIVGKVRKVWPSAYIISVGPKKEEPKKVEPKK-----QEPQ 99

Query: 61  PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVIF 99
           PKVEQIDWAKAYP+FHSYPITHYYH YREEDNPNACVIF
Sbjct: 100 PKVEQIDWAKAYPTFHSYPITHYYHLYREEDNPNACVIF 133

[Close]

BLAST of Csor.00g297010 vs. NCBI nr
Match: XP_038875236.1 (heavy metal-associated isoprenylated plant protein 39-like [Benincasa hispida])

HSP 1 Score: 143 bits (361), Expect = 7.80e-42
Identity = 72/98 (73.47%), Postives = 82/98 (83.67%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
           +AAD KENKITVIGTADPI+IV KVRKVWPSAY+ISVGPEKEE KK +PKKEE      Q
Sbjct: 32  VAADTKENKITVIGTADPIKIVKKVRKVWPSAYLISVGPEKEEAKKPDPKKEEA-----Q 91

Query: 61  PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVI 98
           PK++QIDW KA  +FHSYP THYY+PY+E+ NPN CVI
Sbjct: 92  PKIDQIDWVKACNAFHSYPTTHYYYPYQEQYNPNTCVI 124

[Close]

BLAST of Csor.00g297010 vs. NCBI nr
Match: XP_022922259.1 (heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata])

HSP 1 Score: 141 bits (355), Expect = 6.59e-41
Identity = 72/98 (73.47%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
           MA D KENKITVIGTADPIEIV KVRK+WPSAYIISVGPEKEEPKKVEPKK++     P 
Sbjct: 32  MATDAKENKITVIGTADPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQDP----PT 91

Query: 61  PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVI 98
           PK+E IDWAKAY +  SYP  HYY+  +E+ NPNACVI
Sbjct: 92  PKIEPIDWAKAYTALQSYPTPHYYYSCQEQYNPNACVI 125

[Close]

BLAST of Csor.00g297010 vs. ExPASy TrEMBL
Match: A0A6J1E2W0 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata OX=3662 GN=LOC111430295 PE=4 SV=1)

HSP 1 Score: 141 bits (355), Expect = 3.19e-41
Identity = 72/98 (73.47%), Postives = 80/98 (81.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
           MA D KENKITVIGTADPIEIV KVRK+WPSAYIISVGPEKEEPKKVEPKK++     P 
Sbjct: 32  MATDAKENKITVIGTADPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQDP----PT 91

Query: 61  PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVI 98
           PK+E IDWAKAY +  SYP  HYY+  +E+ NPNACVI
Sbjct: 92  PKIEPIDWAKAYTALQSYPTPHYYYSCQEQYNPNACVI 125

[Close]

BLAST of Csor.00g297010 vs. ExPASy TrEMBL
Match: A0A6J1IAF4 (heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita maxima OX=3661 GN=LOC111471568 PE=4 SV=1)

HSP 1 Score: 132 bits (332), Expect = 1.01e-37
Identity = 70/98 (71.43%), Postives = 76/98 (77.55%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
           MA D KENKITVIGT DPIEIV KVRK+WPSAYIISVGPEKEEPKKVEPKK+      P 
Sbjct: 32  MATDTKENKITVIGTTDPIEIVKKVRKIWPSAYIISVGPEKEEPKKVEPKKQVP----PT 91

Query: 61  PKVEQIDWAKAYPSFHSYPITHYYHPYREEDNPNACVI 98
           PK+EQIDWAKA  +  S P  HYY+   E+ NPNACVI
Sbjct: 92  PKIEQIDWAKACIALQSCPTPHYYYSCEEQYNPNACVI 125

[Close]

BLAST of Csor.00g297010 vs. ExPASy TrEMBL
Match: A0A5A7TMU0 (Heavy metal-associated isoprenylated plant protein 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G002240 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 2.80e-28
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 6  KENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQPKVEQ 65
          +ENKITVIGT DPI+IV KVRKVWP+A IISVG EKE+           KK+E QPK+EQ
Sbjct: 26 EENKITVIGTTDPIKIVKKVRKVWPTANIISVGQEKED----------AKKEESQPKIEQ 85

Query: 66 IDWAKAYPSFHSYPITHYYHPYRE 89
          IDWAKAY +F+SYP +HYY+PY+E
Sbjct: 86 IDWAKAYTTFYSYPTSHYYYPYQE 99

[Close]

BLAST of Csor.00g297010 vs. ExPASy TrEMBL
Match: A0A1S3AUB4 (uncharacterized protein LOC103482783 OS=Cucumis melo OX=3656 GN=LOC103482783 PE=4 SV=1)

HSP 1 Score: 107 bits (268), Expect = 3.63e-28
Identity = 55/84 (65.48%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 6   KENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQPKVEQ 65
           +ENKITVIGT DPI+IV KVRKVWP+A IISVG EKE+           KK+E QPK+EQ
Sbjct: 35  EENKITVIGTTDPIKIVKKVRKVWPTANIISVGQEKED----------AKKEESQPKIEQ 94

Query: 66  IDWAKAYPSFHSYPITHYYHPYRE 89
           IDWAKAY +F+SYP +HYY+PY+E
Sbjct: 95  IDWAKAYTTFYSYPTSHYYYPYQE 108

[Close]

BLAST of Csor.00g297010 vs. ExPASy TrEMBL
Match: A0A0A0KNU5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152270 PE=4 SV=1)

HSP 1 Score: 106 bits (265), Expect = 8.01e-28
Identity = 58/89 (65.17%), Postives = 67/89 (75.28%), Query Frame = 0


Query: 1  MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
          MAA+  ENKITVIGT DPI+IV KVRKVWP A IISVG EKE+           KK+E Q
Sbjct: 23 MAAE--ENKITVIGTTDPIKIVKKVRKVWPCANIISVGQEKED----------AKKEESQ 82

Query: 61 PKVEQIDWAKAYPSFHSYPITHYYHPYRE 89
          PK+EQIDW KAY +F+SYP THYY+PY+E
Sbjct: 83 PKIEQIDWDKAYTTFYSYPTTHYYYPYQE 99

[Close]

BLAST of Csor.00g297010 vs. TAIR 10
Match: AT1G01490.1 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.7e-13
Identity = 53/146 (36.30%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGP-------EKEEPKK------- 60
           +A D KE K+TVIGT DP+ +V K+RK WP   I+ VGP       +KEEPKK       
Sbjct: 32  IAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEEPKKEGGGEPP 91

Query: 61  ---------------VEPKKEETKKQ---------------EPQPKV----EQIDWAKAY 99
                            PKKEE KK+               +PQP V      ++  KAY
Sbjct: 92  KKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAY 151

[Close]

BLAST of Csor.00g297010 vs. TAIR 10
Match: AT1G01490.2 (Heavy metal transport/detoxification superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 8.7e-13
Identity = 53/146 (36.30%), Postives = 71/146 (48.63%), Query Frame = 0


Query: 1   MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGP-------EKEEPKK------- 60
           +A D KE K+TVIGT DP+ +V K+RK WP   I+ VGP       +KEEPKK       
Sbjct: 32  IAMDMKEKKLTVIGTVDPVNVVSKLRKYWPMTDIVLVGPAKEPEKEKKEEPKKEGGGEPP 91

Query: 61  ---------------VEPKKEETKKQ---------------EPQPKV----EQIDWAKAY 99
                            PKKEE KK+               +PQP V      ++  KAY
Sbjct: 92  KKEGEAPKEEGKKEGEAPKKEEEKKEGGDKKEGEKKDQPQAQPQPVVPPPDHVLELVKAY 151

[Close]

BLAST of Csor.00g297010 vs. TAIR 10
Match: AT5G23760.1 (Copper transport protein family )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 31/65 (47.69%), Postives = 44/65 (67.69%), Query Frame = 0


Query: 1  MAADPKENKITVIGTADPIEIVGKVRKVWPSAYIISVGPEKEEPKKVEPKKEETKKQEPQ 60
          +AAD K+ K+TVIG  D + +V K++KV     +ISVGP KEE K  E KKEE K+++ +
Sbjct: 34 IAADMKDQKLTVIGLMDAVAVVKKLKKV-GKVDLISVGPAKEEKK--EEKKEEKKEEKKE 93

Query: 61 PKVEQ 66
           K E+
Sbjct: 94 EKKEE 95

The following BLAST results are available for this feature:

BLAST of Csor.00g297010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O03982	1.2e-11	36.30	Heavy metal-associated isoprenylated plant protein 39 OS=Arabidopsis thaliana OX...	[more]

BLAST of Csor.00g297010 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573451.1	2.31e-65	100.00	hypothetical protein SDJN03_27338, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7012598.1	5.45e-64	97.98	hypothetical protein SDJN02_25350, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023542144.1	1.67e-56	90.91	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita pepo subsp...	[more]
XP_038875236.1	7.80e-42	73.47	heavy metal-associated isoprenylated plant protein 39-like [Benincasa hispida]	[more]
XP_022922259.1	6.59e-41	73.47	heavy metal-associated isoprenylated plant protein 39-like [Cucurbita moschata]	[more]

BLAST of Csor.00g297010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E2W0	3.19e-41	73.47	heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita moschata...	[more]
A0A6J1IAF4	1.01e-37	71.43	heavy metal-associated isoprenylated plant protein 39-like OS=Cucurbita maxima O...	[more]
A0A5A7TMU0	2.80e-28	65.48	Heavy metal-associated isoprenylated plant protein 3-like OS=Cucumis melo var. m...	[more]
A0A1S3AUB4	3.63e-28	65.48	uncharacterized protein LOC103482783 OS=Cucumis melo OX=3656 GN=LOC103482783 PE=...	[more]
A0A0A0KNU5	8.01e-28	65.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G152270 PE=4 SV=1	[more]

BLAST of Csor.00g297010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G01490.1	8.7e-13	36.30	Heavy metal transport/detoxification superfamily protein	[more]
AT1G01490.2	8.7e-13	36.30	Heavy metal transport/detoxification superfamily protein	[more]
AT5G23760.1	1.3e-05	47.69	Copper transport protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.70.100		coord: 1..43 e-value: 2.6E-7 score: 32.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..63
None	No IPR available	PANTHER	PTHR45811	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 2..98
None	No IPR available	PANTHER	PTHR45811:SF49	COPPER TRANSPORT PROTEIN FAMILY-RELATED	coord: 2..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g297010.m01	Csor.00g297010.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding