Csor.00g296960 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g296960
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	protein PHLOEM PROTEIN 2-LIKE A9-like
Location	Csor_Chr18: 3869027 .. 3871005 (+)
RNA-Seq Expression	Csor.00g296960
Synteny	Csor.00g296960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATGAATAGTAATACAGATGGTTTCGAGTGTTCCAACCCTCACTATCGGGCTGATACAAAGTACATAAAAAAGGCCGGGAACGGAAAGGTTCGTATGGTACCCATAATTTGAAAGTTCATGGACTAAATTTTACCGATTTTGATTAAATTGTTAGAAAACAACTAAGTTTCTTGTTGAAATTTTTAGTTTAATAAAATATTTAAATGATTAGCCAAATTCTAAAATTCTATTTTTTTTCGTTATTTGATGGTTCTCAATTTTACAGAAAGAGGTCAAAATATATCCAAGGGGACTAAATATTACATGGGGCAACGACGATCGTTATTGGATGTTTTCGGACAAGTAAGCTCTAAGCTGCAACTTTTTTTTTTTTAATGTTTTTTTTTATGAAGTTTAATCTATTATATTTAAAAACTGAAATTTATTTTGTTAACTCTGATTTTATAGATTTCGTTGTAGAAAAAACTAAAAGGAAAAAAAAAAAAAGTTTTCTTTGATAATCACTAACAACCTATCGTACTAGAGGGCGAAAATTCCCTATCTATAATCCTTTATTGAATCAAATAAATTATAAAGAATATGGAAAGAAAAACAAATGGAGTCACATATTTGTCTATAATAAAAAGGTAAATATGATACTATCATAAGTGGTAGCAAATATCTATATATATTTGACTTTAATAAATAGTCAAATATAGTAATTATGGTAAACTGATATAAAAGGTTAAATATAGTCTATCATACAGAGTATAAGTTAAATATAGTCTATCATACAAAATATTTGTCTATACTAAAGACAAACAGTCAAATATGATATATATATATATATATATATATGGTAATTCATAATTCAAGATTAAATATCTTTAATACTTCTCTCGTGTTTGGCTTTACTCTTTCTAAAGTGGTTTCGCATATATATATATATATATTTTGTTACATAGCCTGTTTTGTATATAGTGGATATCTAGGAATTTGAGAGGTAGAATGGAGAGTATCCTTTCAATACTTAGAGTTTGATCTAAAAGCTAAGTGATATATATGCTACGTTCTTGTGGATCTTTTCCTCTTCTTACAAGTTTCCTTTGGGAAGAGCCATCTAATGGAGTTGCTCTTTTAAGCCAATTCTTCCACGTAATAGTAGAAGAAAGAAAGTTTTCAGATGAAAGGAAGAGTACATAGATGAACTGACATCAAATGAGAGTGATCTAAGAGTAAGATTGTTGAACCGAGATTAAAATAATTCAAGTAATTACCTATACCAACAAGGTTCACTTTCTTTTTTTTTTTGATAGCTCAATTATTGTAATGACCCAAATCCATTGCTAGTTGATATTGTCGTTTTTGGGCTTTCCCTTTCGGGCTTCCTCGTTTTTAAAACGAGTCTGCGAGGGAAAAGTTTCCATACCCATATAAAGGATGTTTCGTTTTCCTTCTTAACGATGCGGAATCTCACAATCCACTCTAAGAGGGTTTCGTTCTCCTCCCCAACCTACGTGGCATCTCACAATTATAAAAACTCTAAAGTTAACATGATTTGCTTTGACCAATTCTAAGTTGGATGACCTACGTATTTTCCTATGAAACATGTGACTGAGGACAAGGACATGTGTTAATTTGTGGAGATTATAGTTTTCATTCGAGAATCGACAAATAAGTAACGTGGTTATGTTACAAAGGATACAGGTTCCAAGTCCAAATTCCTTTGTTTCTTTCAATCGTGTTCATAATTTGTTGTTATTGTGATTTTGTAGGGAGAACGAAGAAGACAGTTTTGCAGAACTAAAACAAGTAAATTGGCTAGAAGTAACTGGTTCAACATCGGAAGAAGTTGAGGTTGGGAAATGGTTCAAAGTGAGTTTCAATGTGACACTACGACCCAATGCTTTTGGATGGGATGAGTCTAATATTTACATAATGGCTAAGATTGGGAAAAAGGGGCGTTTCAGGTTCAAGAAGCTGAATCTTCATAA

mRNA sequence

ATGTCCATGAATAGTAATACAGATGGTTTCGAGTGTTCCAACCCTCACTATCGGGCTGATACAAAGTACATAAAAAAGGCCGGGAACGGAAAGAAAGAGGTCAAAATATATCCAAGGGGACTAAATATTACATGGGGCAACGACGATCGTTATTGGATGTTTTCGGACAAGGAGAACGAAGAAGACAGTTTTGCAGAACTAAAACAAGTAAATTGGCTAGAAGTAACTGGTTCAACATCGGAAGAAGTTGAGGTTGGGAAATGGTTCAAAGTTCAAGAAGCTGAATCTTCATAA

Coding sequence (CDS)

ATGTCCATGAATAGTAATACAGATGGTTTCGAGTGTTCCAACCCTCACTATCGGGCTGATACAAAGTACATAAAAAAGGCCGGGAACGGAAAGAAAGAGGTCAAAATATATCCAAGGGGACTAAATATTACATGGGGCAACGACGATCGTTATTGGATGTTTTCGGACAAGGAGAACGAAGAAGACAGTTTTGCAGAACTAAAACAAGTAAATTGGCTAGAAGTAACTGGTTCAACATCGGAAGAAGTTGAGGTTGGGAAATGGTTCAAAGTTCAAGAAGCTGAATCTTCATAA

Protein sequence

MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENEEDSFAELKQVNWLEVTGSTSEEVEVGKWFKVQEAESS

Homology

[Close]

BLAST of Csor.00g296960 vs. ExPASy Swiss-Prot
Match: Q9SA16 (Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana OX=3702 GN=PP2A9 PE=2 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-07
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 16 HYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENEEDSFAELKQVNWLEV 75
          H++AD+K   +  N +K     P GLN  WG D RYW+      E    AELK V+WLEV
Sbjct: 8  HHKADSK--MEQDNNRKAWISQPSGLNFVWGGDSRYWVI---PKEPRMPAELKMVSWLEV 67

Query: 76 TGSTSEEVEVGKWFKV 92
          TGS  +++E GK +++
Sbjct: 68 TGS-FDKIEPGKTYRI 77

[Close]

BLAST of Csor.00g296960 vs. NCBI nr
Match: KAG6573456.1 (Protein PHLOEM PROTEIN 2-LIKE A9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 206 bits (525), Expect = 2.94e-67
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60
          MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE
Sbjct: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60

Query: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKVQEAESS 97
          EDSFAELKQVNWLEVTGSTSEEVEVGKWFKVQEAESS
Sbjct: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKVQEAESS 97

[Close]

BLAST of Csor.00g296960 vs. NCBI nr
Match: KAG7012603.1 (Protein PHLOEM PROTEIN 2-LIKE A9 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 192 bits (488), Expect = 2.34e-60
Identity = 89/91 (97.80%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60
          MSMNSNTDGFECSNPHYRADTKYIKK GNGKKEVKIYPRGLNITWGNDDRYWMF DKENE
Sbjct: 1  MSMNSNTDGFECSNPHYRADTKYIKKDGNGKKEVKIYPRGLNITWGNDDRYWMFLDKENE 60

Query: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91
          EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV
Sbjct: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91

[Close]

BLAST of Csor.00g296960 vs. NCBI nr
Match: XP_022954489.1 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 187 bits (474), Expect = 3.59e-58
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60
          MSMNSNTDGFECSNPHYRADTKYIKK GNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE
Sbjct: 1  MSMNSNTDGFECSNPHYRADTKYIKKDGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60

Query: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91
           DSFAELKQVNWLEVTGSTSE+VEVGKWFKV
Sbjct: 61 -DSFAELKQVNWLEVTGSTSEKVEVGKWFKV 90

[Close]

BLAST of Csor.00g296960 vs. NCBI nr
Match: XP_022954490.1 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 178 bits (451), Expect = 1.06e-54
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60
          MSMNSNTDGFECSNPHYRADTKYIKK GNGK  VKIYPRGLNITWGNDDRYWMFSDKENE
Sbjct: 1  MSMNSNTDGFECSNPHYRADTKYIKKDGNGK--VKIYPRGLNITWGNDDRYWMFSDKENE 60

Query: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91
           DSFAELKQVNWLEVTGSTSE+VEVGKWFKV
Sbjct: 61 -DSFAELKQVNWLEVTGSTSEKVEVGKWFKV 88

[Close]

BLAST of Csor.00g296960 vs. NCBI nr
Match: XP_023541319.1 (protein PHLOEM PROTEIN 2-LIKE A9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155 bits (392), Expect = 9.21e-46
Identity = 75/92 (81.52%), Postives = 81/92 (88.04%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKK-EVKIYPRGLNITWGNDDRYWMFSDKEN 60
          MSM +N D FECSNPHYRADTKYIKK G GKK E KIYP+GLNITWG D RYWMFSDKE 
Sbjct: 1  MSMTTNIDCFECSNPHYRADTKYIKKDGKGKKKEFKIYPKGLNITWGKDHRYWMFSDKEC 60

Query: 61 EEDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91
          + DSFAELKQV+WLEVTGSTSE+VE+GKWFKV
Sbjct: 61 K-DSFAELKQVSWLEVTGSTSEKVEIGKWFKV 91

[Close]

BLAST of Csor.00g296960 vs. ExPASy TrEMBL
Match: A0A6J1GT48 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456742 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 1.74e-58
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60
          MSMNSNTDGFECSNPHYRADTKYIKK GNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE
Sbjct: 1  MSMNSNTDGFECSNPHYRADTKYIKKDGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60

Query: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91
           DSFAELKQVNWLEVTGSTSE+VEVGKWFKV
Sbjct: 61 -DSFAELKQVNWLEVTGSTSEKVEVGKWFKV 90

[Close]

BLAST of Csor.00g296960 vs. ExPASy TrEMBL
Match: A0A6J1GSJ8 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111456742 PE=4 SV=1)

HSP 1 Score: 178 bits (451), Expect = 5.13e-55
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 1  MSMNSNTDGFECSNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENE 60
          MSMNSNTDGFECSNPHYRADTKYIKK GNGK  VKIYPRGLNITWGNDDRYWMFSDKENE
Sbjct: 1  MSMNSNTDGFECSNPHYRADTKYIKKDGNGK--VKIYPRGLNITWGNDDRYWMFSDKENE 60

Query: 61 EDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 91
           DSFAELKQVNWLEVTGSTSE+VEVGKWFKV
Sbjct: 61 -DSFAELKQVNWLEVTGSTSEKVEVGKWFKV 88

[Close]

BLAST of Csor.00g296960 vs. ExPASy TrEMBL
Match: A0A6J1K456 (protein PHLOEM PROTEIN 2-LIKE A9-like OS=Cucurbita maxima OX=3661 GN=LOC111490487 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.37e-29
Identity = 54/79 (68.35%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 13 SNPHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENEEDSFAELKQVNW 72
          SNPH+RA++  IK    GK + KIYPRGL+ITWGND+RYWM SD E E DSFAELKQVNW
Sbjct: 6  SNPHHRAESNNIKM--EGKNKFKIYPRGLDITWGNDNRYWMLSDMEAE-DSFAELKQVNW 65

Query: 73 LEVTGSTSEEVEVGKWFKV 91
          LEVTGST + +++G WFKV
Sbjct: 66 LEVTGSTPKNLKIGAWFKV 81

[Close]

BLAST of Csor.00g296960 vs. ExPASy TrEMBL
Match: A0A6J1CNK5 (protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111012653 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.32e-18
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 15 PHYRAD-TKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDK---ENEEDSFAELKQV 74
          PHY+ + T  IK  GN   + K+YPRGLNITWG D RYW          +EDS AELKQV
Sbjct: 7  PHYKVNSTDAIKDEGN---KFKLYPRGLNITWGRDSRYWQLPGMTLCRMDEDSVAELKQV 66

Query: 75 NWLEVTGSTSEEVEVGKWFKV 91
           WLEVTGST ++V +GK +KV
Sbjct: 67 AWLEVTGSTPKDVVIGKEYKV 84

[Close]

BLAST of Csor.00g296960 vs. ExPASy TrEMBL
Match: A0A6J1CKW1 (protein PHLOEM PROTEIN 2-LIKE A9-like OS=Momordica charantia OX=3673 GN=LOC111012556 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 6.44e-17
Identity = 45/78 (57.69%), Postives = 51/78 (65.38%), Query Frame = 0


Query: 15 PHYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKEN-EEDSFAELKQVNWL 74
          PH  AD   I K   G    + YPRGLNITWGNDDRYW  S+    +  S AELKQV+WL
Sbjct: 5  PHRVADQTAIAKDTKGN--TRFYPRGLNITWGNDDRYWHISNSNTPKSSSVAELKQVSWL 64

Query: 75 EVTGSTSEEVEVGKWFKV 91
          EVT ST + VEVGK +KV
Sbjct: 65 EVTCST-DNVEVGKKYKV 79

[Close]

BLAST of Csor.00g296960 vs. TAIR 10
Match: AT1G31200.1 (phloem protein 2-A9 )

HSP 1 Score: 57.0 bits (136), Expect = 9.8e-09
Identity = 32/76 (42.11%), Postives = 45/76 (59.21%), Query Frame = 0


Query: 16 HYRADTKYIKKAGNGKKEVKIYPRGLNITWGNDDRYWMFSDKENEEDSFAELKQVNWLEV 75
          H++AD+K   +  N +K     P GLN  WG D RYW+      E    AELK V+WLEV
Sbjct: 8  HHKADSK--MEQDNNRKAWISQPSGLNFVWGGDSRYWVI---PKEPRMPAELKMVSWLEV 67

Query: 76 TGSTSEEVEVGKWFKV 92
          TGS  +++E GK +++
Sbjct: 68 TGS-FDKIEPGKTYRI 77

[Close]

BLAST of Csor.00g296960 vs. TAIR 10
Match: AT1G10155.1 (phloem protein 2-A10 )

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-08
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 38 PRGLNITWGNDDRYWMFSDKENEEDSFAELKQVNWLEVTGSTSEEVEVGKWFKV 92
          P GLN  WG D RYW+     NE+ + AELK+V+WLEVTGS  +++E GK +++
Sbjct: 31 PSGLNFIWGGDSRYWVI---PNEDRTPAELKKVSWLEVTGS-YDKIEPGKTYRI 80

[Close]

BLAST of Csor.00g296960 vs. TAIR 10
Match: AT1G80110.1 (phloem protein 2-B11 )

HSP 1 Score: 40.4 bits (93), Expect = 9.5e-04
Identity = 21/50 (42.00%), Postives = 27/50 (54.00%), Query Frame = 0


Query: 29  NGKKEVKIYPRGLNITWGNDDRYWMFSDKENEE-DSFAELKQVNWLEVTG 78
           +G K   +  R LNI WG++ RYW +    N      AEL  V WLE+TG
Sbjct: 89  SGNKCYMMAARALNIVWGHEQRYWHWISLPNTRFGEVAELIMVWWLEITG 138

The following BLAST results are available for this feature:

BLAST of Csor.00g296960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SA16	1.4e-07	42.11	Protein PHLOEM PROTEIN 2-LIKE A9 OS=Arabidopsis thaliana OX=3702 GN=PP2A9 PE=2 S...	[more]

BLAST of Csor.00g296960 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6573456.1	2.94e-67	100.00	Protein PHLOEM PROTEIN 2-LIKE A9, partial [Cucurbita argyrosperma subsp. sororia...	[more]
KAG7012603.1	2.34e-60	97.80	Protein PHLOEM PROTEIN 2-LIKE A9 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022954489.1	3.59e-58	96.70	protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 [Cucurbita moschata]	[more]
XP_022954490.1	1.06e-54	94.51	protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 [Cucurbita moschata]	[more]
XP_023541319.1	9.21e-46	81.52	protein PHLOEM PROTEIN 2-LIKE A9-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Csor.00g296960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GT48	1.74e-58	96.70	protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1GSJ8	5.13e-55	94.51	protein PHLOEM PROTEIN 2-LIKE A9-like isoform X2 OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1K456	1.37e-29	68.35	protein PHLOEM PROTEIN 2-LIKE A9-like OS=Cucurbita maxima OX=3661 GN=LOC11149048...	[more]
A0A6J1CNK5	1.32e-18	55.56	protein PHLOEM PROTEIN 2-LIKE A9-like isoform X1 OS=Momordica charantia OX=3673 ...	[more]
A0A6J1CKW1	6.44e-17	57.69	protein PHLOEM PROTEIN 2-LIKE A9-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]

BLAST of Csor.00g296960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31200.1	9.8e-09	42.11	phloem protein 2-A9	[more]
AT1G10155.1	2.8e-08	50.00	phloem protein 2-A10	[more]
AT1G80110.1	9.5e-04	42.00	phloem protein 2-B11	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025886	Phloem protein 2-like	PFAM	PF14299	PP2	coord: 32..81 e-value: 5.1E-12 score: 46.1
None	No IPR available	PANTHER	PTHR32278:SF2	PROTEIN PHLOEM PROTEIN 2-LIKE A9	coord: 26..92
None	No IPR available	PANTHER	PTHR32278	FAMILY NOT NAMED	coord: 26..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g296960.m01	Csor.00g296960.m01	mRNA