Csor.00g296440 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g296440
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	Phloem filament protein
Location	Csor_Chr01: 5433763 .. 5434119 (-)
RNA-Seq Expression	Csor.00g296440
Synteny	Csor.00g296440

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTATCGGATTGGGATTGGGATTGGGCTTCAACCTTGGTTTTCCTGATCGTCCAAAACCGGATTGCGGTTGTAATGAAAAATGGATACCAATCCAAGATCTCGGTATGGAGTGCTTGCACCAAGTTGCAAAGTTTGCGCTGGAAGAGCACCATAAGAATCATCGGGAAAATTGGGCACTGAAAGGTATATCTGGAGGTTGGTATTTGGAAATCGACGCGTATAGTGTAAAGTACCGTCTCCATATTGAAGTGTCAAGCCGTTTAGGATTTGTGAGAAGGCATGAAGTTATTGTGCTTGAAAAGAGAGTTGAGTGTGGAAGAATCAGGTCACTCGAGTCGTTCAGGCATATATAA

mRNA sequence

ATGTCTATCGGATTGGGATTGGGATTGGGCTTCAACCTTGGTTTTCCTGATCGTCCAAAACCGGATTGCGGTTGTAATGAAAAATGGATACCAATCCAAGATCTCGGTATGGAGTGCTTGCACCAAGTTGCAAAGTTTGCGCTGGAAGAGCACCATAAGAATCATCGGGAAAATTGGGCACTGAAAGGTATATCTGGAGGTTGGTATTTGGAAATCGACGCGTATAGTGTAAAGTACCGTCTCCATATTGAAGTGTCAAGCCGTTTAGGATTTGTGAGAAGGCATGAAGTTATTGTGCTTGAAAAGAGAGTTGAGTGTGGAAGAATCAGGTCACTCGAGTCGTTCAGGCATATATAA

Coding sequence (CDS)

ATGTCTATCGGATTGGGATTGGGATTGGGCTTCAACCTTGGTTTTCCTGATCGTCCAAAACCGGATTGCGGTTGTAATGAAAAATGGATACCAATCCAAGATCTCGGTATGGAGTGCTTGCACCAAGTTGCAAAGTTTGCGCTGGAAGAGCACCATAAGAATCATCGGGAAAATTGGGCACTGAAAGGTATATCTGGAGGTTGGTATTTGGAAATCGACGCGTATAGTGTAAAGTACCGTCTCCATATTGAAGTGTCAAGCCGTTTAGGATTTGTGAGAAGGCATGAAGTTATTGTGCTTGAAAAGAGAGTTGAGTGTGGAAGAATCAGGTCACTCGAGTCGTTCAGGCATATATAA

Protein sequence

MSIGLGLGLGFNLGFPDRPKPDCGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI

Homology

[Close]

BLAST of Csor.00g296440 vs. NCBI nr
Match: KAG6607543.1 (hypothetical protein SDJN03_00885, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 256 bits (655), Expect = 2.02e-86
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 0


Query: 1   MSIGLGLGLGFNLGFPDRPKPDCGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWA 60
           MSIGLGLGLGFNLGFPDRPKPDCGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWA
Sbjct: 1   MSIGLGLGLGFNLGFPDRPKPDCGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWA 60

Query: 61  LKGISGGWYLEIDAYSVKYRLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118
           LKGISGGWYLEIDAYSVKYRLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI
Sbjct: 61  LKGISGGWYLEIDAYSVKYRLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118

[Close]

BLAST of Csor.00g296440 vs. NCBI nr
Match: KAG6607542.1 (hypothetical protein SDJN03_00884, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.2 bits (217), Expect = 1.21e-19
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 0


Query: 5  LGLGLGFNLGFPD---RPKPDCGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWAL 64
          +GL LG NLGF D   RP+    C+ KW+ I +L   C+ ++++FA+EE++  +R+N   
Sbjct: 3  IGLNLGINLGFFDHHGRPRLGHHCHGKWVEIPNLDSPCMQEISRFAVEEYNHRYRKNLTY 62

Query: 65 KGISGGWYLEIDAYSVKYRLHIEVSSRLG 90
          + I   WYLE+DA SVKYRLHI+V+  + 
Sbjct: 63 QFIYAAWYLEVDARSVKYRLHIQVAKEMN 91

[Close]

BLAST of Csor.00g296440 vs. NCBI nr
Match: KAG6588756.1 (hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 86.3 bits (212), Expect = 5.73e-19
Identity = 38/94 (40.43%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 25  CNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLHIE 84
           C  KWIPI ++   C+  VAKFA+E+++  H+E++  K I  GW++E+    + +RLH+E
Sbjct: 23  CPSKWIPIPNVSEICVQNVAKFAVEDYNLEHKESFKYKNIKCGWFMELKGEDLAFRLHVE 82

Query: 85  VSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118
           V   LG V   +V+V EK+V   ++R LES + I
Sbjct: 83  VKDCLGRVFEMDVVVSEKKVCAEKVRKLESAKLI 116

[Close]

BLAST of Csor.00g296440 vs. NCBI nr
Match: KAG6588758.1 (hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.2 bits (204), Expect = 9.50e-18
Identity = 38/94 (40.43%), Postives = 57/94 (60.64%), Query Frame = 0


Query: 25  CNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLHIE 84
           C  KWI I D+   C+  +AKFA+E+++  H+E++  K I  GW++E+    + YRLHIE
Sbjct: 24  CPSKWIQIPDVSEVCVQNIAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHIE 83

Query: 85  VSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118
           V   LG +    V+V EK+    +IR LES + I
Sbjct: 84  VKDCLGRIFELNVVVSEKKTCAEKIRKLESAKLI 117

[Close]

BLAST of Csor.00g296440 vs. NCBI nr
Match: KAG6588757.1 (hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 1.34e-17
Identity = 38/94 (40.43%), Postives = 58/94 (61.70%), Query Frame = 0


Query: 25  CNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLHIE 84
           C  KWI I D+   C+  VAKFA+E+++  H+E++  K I  GW++E+    + YRLH+E
Sbjct: 24  CPSKWIQIPDVSEVCVQNVAKFAVEDYNLVHKESFKYKSIKCGWFMELKGEDLAYRLHVE 83

Query: 85  VSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118
           V   LG +   +V+V EK+    +IR LES + I
Sbjct: 84  VKDCLGRIFVLDVVVSEKKTCAEKIRKLESAKLI 117

[Close]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL
Match: A0A6J1EIQ8 (uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC111434517 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.73e-16
Identity = 40/89 (44.94%), Postives = 56/89 (62.92%), Query Frame = 0


Query: 27  EKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLHIEVS 86
           EKWI I D+   CL QVAKFA+E+ +  H +      I  GWYLE+ + ++KYRLHI+  
Sbjct: 15  EKWIKIPDVNGHCLQQVAKFAVEKFNAEHGDCLIYNSIFEGWYLELGSNNLKYRLHIKAV 74

Query: 87  SRLGFVRRHEVIVLEKRVECGRIRSLESF 115
             LG +  +EV+V E++ +  RIR L SF
Sbjct: 75  DFLGRLLIYEVVVFEEKPDKERIRKLISF 103

[Close]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL
Match: A0A5D3D2J2 (Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G001660 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.21e-14
Identity = 34/95 (35.79%), Postives = 57/95 (60.00%), Query Frame = 0


Query: 23  CGCNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLH 82
           CG  ++WI I D    C+ +VAK A+ +H+K   +N   K +  GW+LEID +++K+RL+
Sbjct: 3   CGSKKEWIKIPDCNTPCVIEVAKDAVNQHNKASGDNLVFKRVIIGWFLEIDDHTIKHRLY 62

Query: 83  IEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRH 117
           IEV +  G V    ++++    +  R+R+L S  H
Sbjct: 63  IEVINSKGVVLIISIVIVVVTKDGKRVRTLVSSHH 97

[Close]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL
Match: A0A0A0K7B3 (Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.53e-12
Identity = 32/90 (35.56%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 26  NEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKYRLHIEV 85
           N+KWI I D    C+  + K+A+++++K H++N   K +  GWYLEID    K RL IEV
Sbjct: 7   NDKWIQIPDTKTPCVIDLGKYAVDDYNKAHKDNLVFKKVIIGWYLEIDYDKTKLRLIIEV 66

Query: 86  SSRLGFVRRHEVIVLEKRVECGRIRSLESF 115
            +  G V  +EV+++    +  ++++  SF
Sbjct: 67  VNSKGEVIIYEVVIVVDDKDGKKVKTPISF 96

[Close]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL
Match: A0A6J1EQ39 (uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111434636 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.58e-12
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 23  CG---CNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKY 82
           CG     EKWI I D+   C+ +VAK A+E+ +  H  +   + I  GWY E+   ++KY
Sbjct: 8   CGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKY 67

Query: 83  RLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118
           RLHI     L     +E +V E++ +  RIR L SF +I
Sbjct: 68  RLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLISFIYI 106

[Close]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL
Match: A0A6J1EI90 (uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC111434592 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.58e-12
Identity = 37/99 (37.37%), Postives = 54/99 (54.55%), Query Frame = 0


Query: 23  CG---CNEKWIPIQDLGMECLHQVAKFALEEHHKNHRENWALKGISGGWYLEIDAYSVKY 82
           CG     EKWI I D+   C+ +VAK A+E+ +  H  +   + I  GWY E+   ++KY
Sbjct: 8   CGQVPAEEKWIKIPDVSGHCVQEVAKLAVEQFNVQHGHSLKYESIHEGWYCELGQNNLKY 67

Query: 83  RLHIEVSSRLGFVRRHEVIVLEKRVECGRIRSLESFRHI 118
           RLHI     L     +E +V E++ +  RIR L SF +I
Sbjct: 68  RLHIRAIDFLQRSLLYEALVFEEKPKFERIRKLISFVYI 106

The following BLAST results are available for this feature:

BLAST of Csor.00g296440 vs.


Match Name	E-value	Identity	Description

BLAST of Csor.00g296440 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607543.1	2.02e-86	100.00	hypothetical protein SDJN03_00885, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6607542.1	1.21e-19	43.82	hypothetical protein SDJN03_00884, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588756.1	5.73e-19	40.43	hypothetical protein SDJN03_17321, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588758.1	9.50e-18	40.43	hypothetical protein SDJN03_17323, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6588757.1	1.34e-17	40.43	hypothetical protein SDJN03_17322, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EIQ8	9.73e-16	44.94	uncharacterized protein LOC111434517 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]
A0A5D3D2J2	4.21e-14	35.79	Phloem filament protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0K7B3	5.53e-12	35.56	Phloem filament protein OS=Cucumis sativus OX=3659 GN=Csa_7G222870 PE=4 SV=1	[more]
A0A6J1EQ39	5.58e-12	37.37	uncharacterized protein LOC111434636 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1EI90	5.58e-12	37.37	uncharacterized protein LOC111434592 OS=Cucurbita moschata OX=3662 GN=LOC1114345...	[more]

BLAST of Csor.00g296440 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009994	Phloem filament PP1	PFAM	PF07430	PP1	coord: 39..115 e-value: 2.3E-16 score: 59.6
None	No IPR available	GENE3D	3.10.450.10		coord: 24..118 e-value: 5.4E-8 score: 34.9
None	No IPR available	SUPERFAMILY	54403	Cystatin/monellin	coord: 29..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g296440.m01	Csor.00g296440.m01	mRNA