Csor.00g296420 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g296420
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RNA-binding protein 24 isoform X1
Location	Csor_Chr01: 5468852 .. 5470488 (+)
RNA-Seq Expression	Csor.00g296420
Synteny	Csor.00g296420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCAGCCAACTTGGGAGCTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTACGTCTCTTCTTTACTCTTTTAATTAACCCAACTCTTTAATTTAATTTAATTAACTAACTAACTCCTTAACTCTTCAATTCAGGTCACTTTCCGGGACCCCGAAGCCGCCATGAGGGCTTGCGTGGATGCTGCTCCGGTCATCGACGGGCGGAGGGCCAATTGCAACCTCGCTTCTCTTGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGGTAACTATAACTCAGATCTACCAAATCTATCATCATTTCCACCAAACCCACAATTTTTTAATCATTCATTTGTTTTCAATTTGTGTTAAAGAGAAAAAGAAATGGGAATTGGCAGGCGGAGGAGGAGGCGGCGGCGGCGGTGGTGGTGGAGGAAGAAACTTTAGGGTATTCAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTAAATTTATATTATATATATATTCTCTCTCTCTTCGCTTTACTTTATTACTACATACAACCATTAATTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACTGCATGCATTGCCACTGTAACTATTCATTTAATTACCTCCTCATTGCTATTGTTTTAGGTACTCTTCCTATTCACCCGACTACAATTACCCTACGGTTTGTACTCACAACTTCTCTTTCTACCTTCCTTAATACTTCTTTAGGGGAGGGTGAAAAGTAAAAGATTCTGTACCAATCTGGTCAAAGGGTTCAAAAGTGAAAGTTAACCAAACCAATTTGGTGTTTTTCTTGTCTTGTCGTTTTATGGGACACTTTCTGTTTTTGCAATTAATATTGTAACAGACCATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTATGGGTTTGGTTATACTTCGATTCATGCATTATAATCCTGAAATTGTAGCCGACCACTTTGGAATATTAATTTTTTTTTTTTTTAATTTTGATTTAGAGCTATTACAATGTGTACGGCGGCACAACTGCTCAGTACCCTATGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGCGGAGCCAATGGGTTCAGTGCTGGTTCTGGTCAACAGGGTTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGCTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCCCACGCCACCCACCCTGCCGTCAGGTAGTGGCTCTTTTATATTCCTTACTTATAAACTCATGATCTATATAGATGTACTAATATTTTTGACAGTGTTTTTTGCTGTGCCACAGGCGTGACAATGGCTCTAACTACACCAATCCCACATCGCTAG

mRNA sequence

ATGAGTCCAGCCAACTTGGGAGCTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGGGACCCCGAAGCCGCCATGAGGGCTTGCGTGGATGCTGCTCCGGTCATCGACGGGCGGAGGGCCAATTGCAACCTCGCTTCTCTTGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGAGAAAAAGAAATGGGAATTGGCAGGCGGAGGAGGAGGCGGCGGCGGCGGTGGTGGTGGAGGAAGAAACTTTAGGGTATTCAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCACCCGACTACAATTACCCTACGAGCTATTACAATGTGTACGGCGGCACAACTGCTCAGTACCCTATGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGCGGAGCCAATGGGTTCAGTGCTGGTTCTGGTCAACAGGGTTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGCTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCCCACGCCACCCACCCTGCCGTCAGGCGTGACAATGGCTCTAACTACACCAATCCCACATCGCTAG

Coding sequence (CDS)

ATGAGTCCAGCCAACTTGGGAGCTCAGTTTGGAGACACCACTTACACCAAGGTCTTCGTGGGCGGCTTGGCTTGGGAGACCCACAAGGACACCATGAACAAATACTTCCAACAGTTTGGGGATATCTTGGAAGCCGTTGTTATTACCGACAAGGCCACCGGTCGATCCAAAGGCTATGGATTTGTCACTTTCCGGGACCCCGAAGCCGCCATGAGGGCTTGCGTGGATGCTGCTCCGGTCATCGACGGGCGGAGGGCCAATTGCAACCTCGCTTCTCTTGGGGTTCAAAGATCCAAACCCTCAACACCCAACCACGAGAAAAAGAAATGGGAATTGGCAGGCGGAGGAGGAGGCGGCGGCGGCGGTGGTGGTGGAGGAAGAAACTTTAGGGTATTCAGCTGTTTCCAGAGTGGATTTGGAGGGAATGTTGGATCAGCTTTTCATTCAACACCAACTTTCCCTCATTATGCTGTCCACCAAGGGATCCCTTACAATCTCTATGGGTACTCTTCCTATTCACCCGACTACAATTACCCTACGAGCTATTACAATGTGTACGGCGGCACAACTGCTCAGTACCCTATGTATAGTACTGGTCCCGGCGGCTTAATGAGTGGTGCGGCGGCGTTCTACCCGTATTTCCAGTTTGGGGAAGGAAGTGGCGGCGGCGGCGGAGCCAATGGGTTCAGTGCTGGTTCTGGTCAACAGGGTTATGGGGTTCAGTACCCTCACCATCTGTTTCAGTACTCGGCTGGGATTAATTCAACTGCAACCACGCTCCCACAGCACTATGGTGGTCCTCCTATGTCTCTCCCGCCCACGCCACCCACCCTGCCGTCAGGCGTGACAATGGCTCTAACTACACCAATCCCACATCGCTAG

Protein sequence

MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPTSYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGVQYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR

Homology

[Close]

BLAST of Csor.00g296420 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.8e-26
Identity = 101/270 (37.41%), Postives = 131/270 (48.52%), Query Frame = 0


Query: 5   NLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTF 64
           N+   FGDT  TKVFVGGLAW+THK+ M  +F ++GDILEAV+I+DK T RSKGYGFVTF
Sbjct: 6   NVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF 65

Query: 65  RDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGG 124
           +D +AA RAC D+ P+I+GRRANCNLASLG +  K  T    ++          G   G 
Sbjct: 66  KDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQ----------GPKNGN 125

Query: 125 GGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPTSYYN 184
                 V +  Q  +     +  H          HQ +P+  YGY S    Y  P   +N
Sbjct: 126 RATPPHVGNHSQWYYPSGFTNQQHQQQN------HQAVPF--YGYPS---AYVAPNMTFN 185

Query: 185 ----VYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 244
                 GGT      Y  G    M       P  Q+      GGG     A S    +  
Sbjct: 186 QKVGYVGGT------YMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYT 245

Query: 245 QYPHHLFQYSAGINSTATTLPQHYGGPPMS 271
            YP+H  Q + G    + + P  +  PP+S
Sbjct: 246 VYPYHQSQ-AIGFPQPSFSKPLSFSTPPIS 247

[Close]

BLAST of Csor.00g296420 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 71
          DTTYTK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Csor.00g296420 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 71
          DTTYTK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Csor.00g296420 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 71
          DTTYTK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Csor.00g296420 vs. ExPASy Swiss-Prot
Match: Q6P8A7 (RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 9.9e-25
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 0


Query: 12 DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 71
          DTTYTK+FVGGL + T   ++ KYF+ FGDI EAVVITD+ TG+S+GYGFVT  D  AA 
Sbjct: 7  DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 72 RACVDAAPVIDGRRANCNLASLGVQ 97
          RAC D  P+IDGR+AN NLA LG +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of Csor.00g296420 vs. NCBI nr
Match: KAG6607545.1 (putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 589 bits (1518), Expect = 3.31e-212
Identity = 293/293 (100.00%), Postives = 293/293 (100.00%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
           GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT
Sbjct: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV
Sbjct: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR
Sbjct: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293

[Close]

BLAST of Csor.00g296420 vs. NCBI nr
Match: KAG7037185.1 (putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 578 bits (1490), Expect = 6.63e-208
Identity = 290/295 (98.31%), Postives = 290/295 (98.31%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120

Query: 121 GGGGGG--RNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNY 180
           GGGGGG  RNFRV SCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNY
Sbjct: 121 GGGGGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNY 180

Query: 181 PTSYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGY 240
           PTSYYNVYGG TAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGY
Sbjct: 181 PTSYYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGY 240

Query: 241 GVQYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           GVQYPHHLFQYSAGINSTATT PQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR
Sbjct: 241 GVQYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 295

[Close]

BLAST of Csor.00g296420 vs. NCBI nr
Match: XP_023523843.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 568 bits (1465), Expect = 3.70e-204
Identity = 283/293 (96.59%), Postives = 286/293 (97.61%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLG QFGDTTYTK+FVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGGQFGDTTYTKLFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLG+QRSKPSTPNH+KKKWELAGGGGGGG
Sbjct: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGLQRSKPSTPNHDKKKWELAGGGGGGG 120

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
           GGGG  RNFRV SCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT
Sbjct: 121 GGGG--RNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYPMYSTGPGGLMSGAAAFYPYFQFGEGS GGGGANGFSAGSGQQGYGV
Sbjct: 181 SYYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSAGGGGANGFSAGSGQQGYGV 240

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATT PQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR
Sbjct: 241 QYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 291

[Close]

BLAST of Csor.00g296420 vs. NCBI nr
Match: XP_022932483.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita moschata])

HSP 1 Score: 561 bits (1447), Expect = 2.66e-201
Identity = 285/293 (97.27%), Postives = 285/293 (97.27%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLG QFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
           GGGGG RNFRV SCFQSGFGGNVGSAFHSTPTFP YAVHQGIPYNLYGYSSYSPDYNYPT
Sbjct: 128 GGGGG-RNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPT 187

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGG ANGFSAGSGQQGYG 
Sbjct: 188 SYYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGG-ANGFSAGSGQQGYGG 247

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATTLPQHYGGPPMSLP TPPTLPSGVTMALTTPIPHR
Sbjct: 248 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 298

[Close]

BLAST of Csor.00g296420 vs. NCBI nr
Match: XP_022973423.1 (probable RNA-binding protein ARP1 isoform X1 [Cucurbita maxima])

HSP 1 Score: 559 bits (1441), Expect = 1.45e-200
Identity = 278/293 (94.88%), Postives = 281/293 (95.90%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
                 RNFRV SCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPD+ YPT
Sbjct: 121 ------RNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPT 180

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYP+YSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFS GSGQQGYGV
Sbjct: 181 SYYNVYGGATAQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGV 240

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATT PQHYGGPPMSLPPTPPTLPSGVTMALT PIPHR
Sbjct: 241 QYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 287

[Close]

BLAST of Csor.00g296420 vs. ExPASy TrEMBL
Match: A0A6J1F1U2 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111438889 PE=4 SV=1)

HSP 1 Score: 561 bits (1447), Expect = 1.29e-201
Identity = 285/293 (97.27%), Postives = 285/293 (97.27%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLG QFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 8   MSPANLGGQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 67

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 68  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 127

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
           GGGGG RNFRV SCFQSGFGGNVGSAFHSTPTFP YAVHQGIPYNLYGYSSYSPDYNYPT
Sbjct: 128 GGGGG-RNFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPT 187

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGG ANGFSAGSGQQGYG 
Sbjct: 188 SYYNVYGGATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGG-ANGFSAGSGQQGYGG 247

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATTLPQHYGGPPMSLP TPPTLPSGVTMALTTPIPHR
Sbjct: 248 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 298

[Close]

BLAST of Csor.00g296420 vs. ExPASy TrEMBL
Match: A0A6J1ID05 (probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471971 PE=4 SV=1)

HSP 1 Score: 559 bits (1441), Expect = 7.03e-201
Identity = 278/293 (94.88%), Postives = 281/293 (95.90%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
                 RNFRV SCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPD+ YPT
Sbjct: 121 ------RNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPT 180

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYP+YSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFS GSGQQGYGV
Sbjct: 181 SYYNVYGGATAQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGV 240

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATT PQHYGGPPMSLPPTPPTLPSGVTMALT PIPHR
Sbjct: 241 QYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 287

[Close]

BLAST of Csor.00g296420 vs. ExPASy TrEMBL
Match: A0A6J1F2C0 (probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LOC111438889 PE=4 SV=1)

HSP 1 Score: 548 bits (1411), Expect = 2.44e-196
Identity = 278/286 (97.20%), Postives = 279/286 (97.55%), Query Frame = 0


Query: 8   AQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDP 67
           +QFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDP
Sbjct: 2   SQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDP 61

Query: 68  EAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGGR 127
           EAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGG R
Sbjct: 62  EAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGG-R 121

Query: 128 NFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPTSYYNVYG 187
           NFRV SCFQSGFGGNVGSAFHSTPTFP YAVHQGIPYNLYGYSSYSPDYNYPTSYYNVYG
Sbjct: 122 NFRVLSCFQSGFGGNVGSAFHSTPTFPRYAVHQGIPYNLYGYSSYSPDYNYPTSYYNVYG 181

Query: 188 GTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGVQYPHHLF 247
           G TAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGG ANGFSAGSGQQGYG QYPHHLF
Sbjct: 182 GATAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGG-ANGFSAGSGQQGYGGQYPHHLF 241

Query: 248 QYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYSAGINSTATTLPQHYGGPPMSLP TPPTLPSGVTMALTTPIPHR
Sbjct: 242 QYSAGINSTATTLPQHYGGPPMSLPLTPPTLPSGVTMALTTPIPHR 285

[Close]

BLAST of Csor.00g296420 vs. ExPASy TrEMBL
Match: A0A6J1IBB7 (probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471971 PE=4 SV=1)

HSP 1 Score: 536 bits (1382), Expect = 5.15e-192
Identity = 270/293 (92.15%), Postives = 273/293 (93.17%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNH              G
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNH--------------G 120

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
           GGGGGGRNFRV SCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPD+ YPT
Sbjct: 121 GGGGGGRNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPT 180

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYP+YSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFS GSGQQGYGV
Sbjct: 181 SYYNVYGGATAQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGV 240

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPIPHR 293
           QYPHHLFQYSAGINSTATT PQHYGGPPMSLPPTPPTLPSGVTMALT PIPHR
Sbjct: 241 QYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPSGVTMALTAPIPHR 279

[Close]

BLAST of Csor.00g296420 vs. ExPASy TrEMBL
Match: A0A6J1IEJ2 (probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471971 PE=4 SV=1)

HSP 1 Score: 536 bits (1381), Expect = 8.18e-192
Identity = 266/280 (95.00%), Postives = 269/280 (96.07%), Query Frame = 0


Query: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60
           MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG
Sbjct: 1   MSPANLGAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYG 60

Query: 61  FVTFRDPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120
           FVTFR+PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG
Sbjct: 61  FVTFREPEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGG 120

Query: 121 GGGGGGRNFRVFSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDYNYPT 180
                 RNFRV SCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPD+ YPT
Sbjct: 121 ------RNFRVLSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDFTYPT 180

Query: 181 SYYNVYGGTTAQYPMYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 240
           SYYNVYGG TAQYP+YSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFS GSGQQGYGV
Sbjct: 181 SYYNVYGGATAQYPVYSTGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSVGSGQQGYGV 240

Query: 241 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPS 280
           QYPHHLFQYSAGINSTATT PQHYGGPPMSLPPTPPTLPS
Sbjct: 241 QYPHHLFQYSAGINSTATTFPQHYGGPPMSLPPTPPTLPS 274

[Close]

BLAST of Csor.00g296420 vs. TAIR 10
Match: AT1G33470.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 249.6 bits (636), Expect = 3.1e-66
Identity = 149/272 (54.78%), Postives = 180/272 (66.18%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 71
           DTT+TKVFVGGLAWETHK ++  YF+QFGDI+EAVVITDK++GRSKGYGFVTF DPEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGGRNFRV 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H                G  GGR  +V
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH----------------GHVGGRGMKV 122

Query: 132 FSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPY-NLYGYSSYSPDYNYPTSYYNVYGGTT 191
            S F++ F G   +A  S   F HY     +PY N +G+SSYS DYNYPTSYYNVYGG T
Sbjct: 123 TSPFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTSYYNVYGGAT 182

Query: 192 AQYPMYSTGP--GGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGVQYPHHLFQ 251
           AQ+PMY +GP  G   + AA FYPY QF EG+   G   G++         + YP+H+F 
Sbjct: 183 AQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGN---GPVTGYAP--------LHYPNHMFH 236

Query: 252 YSAGINSTATTLPQHYGGPPMSLPPTPPTLPS 281
           YSA   +       H+ G P+SL P+ P +PS
Sbjct: 243 YSAPGGNY-----PHHNGSPVSLAPS-PVIPS 236

[Close]

BLAST of Csor.00g296420 vs. TAIR 10
Match: AT1G33470.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 245.0 bits (624), Expect = 7.6e-65
Identity = 149/273 (54.58%), Postives = 180/273 (65.93%), Query Frame = 0


Query: 12  DTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRDPEAAM 71
           DTT+TKVFVGGLAWETHK ++  YF+QFGDI+EAVVITDK++GRSKGYGFVTF DPEAA 
Sbjct: 3   DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62

Query: 72  RACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGGRNFRV 131
           +ACVD APVIDGRRANCNLA+ GVQRSKPS+P H                G  GGR  +V
Sbjct: 63  KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIH----------------GHVGGRGMKV 122

Query: 132 FSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPY-NLYGYSSYSPDYNYPT-SYYNVYGGT 191
            S F++ F G   +A  S   F HY     +PY N +G+SSYS DYNYPT SYYNVYGG 
Sbjct: 123 TSPFKTHF-GTAATAIPSPLPFSHYT----LPYTNPFGFSSYSMDYNYPTQSYYNVYGGA 182

Query: 192 TAQYPMYSTGP--GGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGVQYPHHLF 251
           TAQ+PMY +GP  G   + AA FYPY QF EG+   G   G++         + YP+H+F
Sbjct: 183 TAQHPMYGSGPMTGVAAAPAAGFYPYLQFAEGN---GPVTGYAP--------LHYPNHMF 237

Query: 252 QYSAGINSTATTLPQHYGGPPMSLPPTPPTLPS 281
            YSA   +       H+ G P+SL P+ P +PS
Sbjct: 243 HYSAPGGNY-----PHHNGSPVSLAPS-PVIPS 237

[Close]

BLAST of Csor.00g296420 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 222.2 bits (565), Expect = 5.3e-58
Identity = 142/271 (52.40%), Postives = 167/271 (61.62%), Query Frame = 0


Query: 7   GAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRD 66
           G   GDTTYTKVFVGGLAWETHK+TM K+F+QFG+ILEAVVITDKA+GRSKGYGFVTFR+
Sbjct: 4   GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63

Query: 67  PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGG 126
            EAA  ACVDA PVIDGRRANCNLASLG+QRSKPSTPNH               GGGG  
Sbjct: 64  AEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------------GGGGRI 123

Query: 127 RNFRV-FSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDY-NYPTSYYN 186
            N RV  S  Q+GFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y 
Sbjct: 124 NNMRVMMSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYG 183

Query: 187 VYGGTT-AQYPMY---STGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 246
           +YG T+  QY +Y   ++G GGL + AA+  P++  G G GG            Q     
Sbjct: 184 MYGCTSGGQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGG-----------VQFSQPQ 232

Query: 247 QYPHHLFQYSAGINSTATTLPQHYGGPPMSL 272
            + HHL  Y+          P HY  P  S+
Sbjct: 244 PFYHHLSSYN----------PHHYSPPTFSM 232

[Close]

BLAST of Csor.00g296420 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.5 bits (563), Expect = 9.1e-58
Identity = 146/286 (51.05%), Postives = 172/286 (60.14%), Query Frame = 0


Query: 7   GAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRD 66
           G   GDTTYTKVFVGGLAWETHK+TM K+F+QFG+ILEAVVITDKA+GRSKGYGFVTFR+
Sbjct: 4   GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63

Query: 67  PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGG 126
            EAA  ACVDA PVIDGRRANCNLASLG+QRSKPSTPNH               GGGG  
Sbjct: 64  AEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------------GGGGRI 123

Query: 127 RNFRV-FSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDY-NYPTSYYN 186
            N RV  S  Q+GFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y 
Sbjct: 124 NNMRVMMSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYG 183

Query: 187 VYGGTT-AQYPMY---STGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 246
           +YG T+  QY +Y   ++G GGL + AA+  P++  G G GG            Q     
Sbjct: 184 MYGCTSGGQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGG-----------VQFSQPQ 243

Query: 247 QYPHHLFQYSAGINSTATTLPQHYGGPPMSL-------PPTPPTLP 280
            + HHL  Y+          P HY  P  S+       P  PP +P
Sbjct: 244 PFYHHLSSYN----------PHHYSPPTFSMQQGVTGFPLQPPLIP 247

[Close]

BLAST of Csor.00g296420 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 219.2 bits (557), Expect = 4.5e-57
Identity = 145/290 (50.00%), Postives = 173/290 (59.66%), Query Frame = 0


Query: 7   GAQFGDTTYTKVFVGGLAWETHKDTMNKYFQQFGDILEAVVITDKATGRSKGYGFVTFRD 66
           G   GDTTYTKVFVGGLAWETHK+TM K+F+QFG+ILEAVVITDKA+GRSKGYGFVTFR+
Sbjct: 4   GIGLGDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFRE 63

Query: 67  PEAAMRACVDAAPVIDGRRANCNLASLGVQRSKPSTPNHEKKKWELAGGGGGGGGGGGGG 126
            EAA  ACVDA PVIDGRRANCNLASLG+QRSKPSTPNH               GGGG  
Sbjct: 64  AEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNH---------------GGGGRI 123

Query: 127 RNFRV-FSCFQSGFGGNVGSAFHSTPTFPHYAVHQGIPYNLYGYSSYSPDY-NYPTSYYN 186
            N RV  S  Q+GFG          PTF HY     +P NL+GYS YSPDY ++PT+ Y 
Sbjct: 124 NNMRVMMSTMQTGFGPPPPP---QPPTFTHY---PHLPLNLFGYSPYSPDYSSFPTNLYG 183

Query: 187 VYGGTT-AQYPMY---STGPGGLMSGAAAFYPYFQFGEGSGGGGGANGFSAGSGQQGYGV 246
           +YG T+  QY +Y   ++G GGL + AA+  P++  G G GG            Q     
Sbjct: 184 MYGCTSGGQYGVYGNRNSGGGGLTAAAASATPFYPCGGGHGG-----------VQFSQPQ 243

Query: 247 QYPHHLFQYSAGINSTATTLPQHYGGPPMSLPPTPPTLPSGVTMALTTPI 291
            + HHL  Y+          P HY  P  S+        S  T + + P+
Sbjct: 244 PFYHHLSSYN----------PHHYSPPTFSMQQGSRNRLSASTTSYSLPL 251

The following BLAST results are available for this feature:

BLAST of Csor.00g296420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	6.8e-26	37.41	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q6GQD3	9.9e-25	63.53	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	9.9e-25	63.53	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q5ZMA3	9.9e-25	63.53	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]
Q6P8A7	9.9e-25	63.53	RNA-binding protein 24 OS=Xenopus tropicalis OX=8364 GN=rbm24 PE=2 SV=1	[more]

BLAST of Csor.00g296420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6607545.1	3.31e-212	100.00	putative RNA-binding protein ARP1, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7037185.1	6.63e-208	98.31	putative RNA-binding protein ARP1 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023523843.1	3.70e-204	96.59	probable RNA-binding protein ARP1 isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_022932483.1	2.66e-201	97.27	probable RNA-binding protein ARP1 isoform X1 [Cucurbita moschata]	[more]
XP_022973423.1	1.45e-200	94.88	probable RNA-binding protein ARP1 isoform X1 [Cucurbita maxima]	[more]

BLAST of Csor.00g296420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F1U2	1.29e-201	97.27	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1ID05	7.03e-201	94.88	probable RNA-binding protein ARP1 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1F2C0	2.44e-196	97.20	probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1IBB7	5.15e-192	92.15	probable RNA-binding protein ARP1 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1IEJ2	8.18e-192	95.00	probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of Csor.00g296420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33470.2	3.1e-66	54.78	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G33470.1	7.6e-65	54.58	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	5.3e-58	52.40	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	9.1e-58	51.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	4.5e-57	50.00	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 3.8E-21 score: 86.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..73 e-value: 2.2E-15 score: 56.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..100 score: 16.517189
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..136 e-value: 3.2E-24 score: 87.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..121
None	No IPR available	PANTHER	PTHR11176:SF16	OS01G0876800 PROTEIN	coord: 1..287
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 16..91 e-value: 9.89906E-42 score: 136.976
IPR037366	BOULE/DAZ family	PANTHER	PTHR11176	BOULE-RELATED	coord: 1..287
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g296420.m02	Csor.00g296420.m02	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding