Csor.00g293850 (gene) Silver-seed gourd (wild; sororia) v1

Overview
NameCsor.00g293850
Typegene
OrganismCucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
DescriptionUnknown protein
LocationCsor_Chr20: 7628735 .. 7628974 (-)
RNA-Seq ExpressionCsor.00g293850
SyntenyCsor.00g293850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCCTCTGTCACCACAGCTGTACCAGGTAGCTCTGTCAACCGTGTTGGAGGTATTACTGTCTGAACACCTACTCCTGGTGCTTCAGACACTAATGTCGTTTGGCCCGATACAAGTGCTGTTGGAGCCGCCTGGCTTCCAAGACCAGCAAGGGCTGCCTGTACCGCTTGGTCCACCCGGCTCTGCATCGCCTAATCTACTCAACTCTCAATCAATGATTGTAATGCCTCCAAAGTAA

mRNA sequence

ATGGTGCCTCTGTCACCACAGCTGTACCAGGTAGCTCTGTCAACCGTGTTGGAGGTATTACTGTCTGAACACCTACTCCTGGTGCTTCAGACACTAATGTCGTTTGGCCCGATACAAGTGCTGTTGGAGCCGCCTGGCTTCCAAGACCAGCAAGGGCTGCCTGTACCGCTTGGTCCACCCGGCTCTGCATCGCCTAATCTACTCAACTCTCAATCAATGATTGTAATGCCTCCAAAGTAA

Coding sequence (CDS)

ATGGTGCCTCTGTCACCACAGCTGTACCAGGTAGCTCTGTCAACCGTGTTGGAGGTATTACTGTCTGAACACCTACTCCTGGTGCTTCAGACACTAATGTCGTTTGGCCCGATACAAGTGCTGTTGGAGCCGCCTGGCTTCCAAGACCAGCAAGGGCTGCCTGTACCGCTTGGTCCACCCGGCTCTGCATCGCCTAATCTACTCAACTCTCAATCAATGATTGTAATGCCTCCAAAGTAA

Protein sequence

MVPLSPQLYQVALSTVLEVLLSEHLLLVLQTLMSFGPIQVLLEPPGFQDQQGLPVPLGPPGSASPNLLNSQSMIVMPPK
Homology
[Close]
BLAST of Csor.00g293850 vs. NCBI nr
Match: KAG6571275.1 (hypothetical protein SDJN03_30190, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149 bits (375), Expect = 6.24e-45
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MVPLSPQLYQVALSTVLEVLLSEHLLLVLQTLMSFGPIQVLLEPPGFQDQQGLPVPLGPP 60
          MVPLSPQLYQVALSTVLEVLLSEHLLLVLQTLMSFGPIQVLLEPPGFQDQQGLPVPLGPP
Sbjct: 1  MVPLSPQLYQVALSTVLEVLLSEHLLLVLQTLMSFGPIQVLLEPPGFQDQQGLPVPLGPP 60

Query: 61 GSASPNLLNSQSMIVMPPK 79
          GSASPNLLNSQSMIVMPPK
Sbjct: 61 GSASPNLLNSQSMIVMPPK 79

[Close]
BLAST of Csor.00g293850 vs. NCBI nr
Match: KAG6590339.1 (hypothetical protein SDJN03_15762, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 61.6 bits (148), Expect = 1.90e-10
Identity = 40/78 (51.28%), Postives = 42/78 (53.85%), Query Frame = 0 

Query: 1  MVPLSPQLYQVALSTVLEVLLSEHLLLVLQTLMSFGPIQVLLEPPGFQDQQGLPVPLGPP 60
          MVPLSPQLYQ                               LEP GFQDQQGLPVPLGP 
Sbjct: 1  MVPLSPQLYQ-------------------------------LEPGGFQDQQGLPVPLGPL 47

Query: 61 GSASPNLLNSQSMIVMPP 78
          GSA P+LL+SQSMI M P
Sbjct: 61 GSALPDLLDSQSMIAMSP 47

The following BLAST results are available for this feature:
BLAST of Csor.00g293850 vs.
Match NameE-valueIdentityDescription
BLAST of Csor.00g293850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571275.16.24e-45100.00hypothetical protein SDJN03_30190, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6590339.11.90e-1051.28hypothetical protein SDJN03_15762, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Csor.00g293850 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Csor.00g293850 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csor.00g293850.m01Csor.00g293850.m01mRNA