Csor.00g287810 (gene) Silver-seed gourd (wild; sororia) v1

Overview


Name	Csor.00g287810
Type	gene
Organism	Cucurbita argyrosperma subsp. sororia (Silver-seed gourd (wild; sororia) v1)
Description	RING-H2 finger protein ATL74-like
Location	Csor_Chr04: 18609385 .. 18612561 (+)
RNA-Seq Expression	Csor.00g287810
Synteny	Csor.00g287810

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGTCTTCTGGTGTAAATTTGGTGATGACTGTGATTGGATTCACTGTGAGTACTTTGTTCATCGTGTTCGTCTGCACGAGGCTTGTTTGTGCTCGGATTCATCTCAATGCTTCAAGGCGCTCCTTCCTTGTCGCTTCTAGATCCGATCTCAGTGGGGTGAGCTTGTTCTTCTCATATTTAGTTTGCTTCTAGATTTGATATATACACATATACATTTCATATGCTGATTCATGGGCCATATTTCTCACTAGAAACTGGATTTGATTGCCTCTCTGCACTATAGTTCTTGCATTTCTGCAAATTGAATGTAGTTTCACCATTCATTTCATACGGTTGTTTTACTCTGTTCTGATATGCTGTAAGAGACTACTAAAAAAGGCGAAACTCACACGTTTTTAGAGATTGTTACATATAATTCTGTTCTATGATTAGCTAGTTGGTGAGACAATAGCTTACCAAGGCACATGGTTAATGTTTGATCTCAGATGATTCGGCGTACACTTCGATACACTTCGATCCAAAGCCATTTGAATTTGAAAGCAATCAAAATAAAAAGTGGAAGAACCACCGGACCTATTATTGACCCATATATTGTGATATCATGTTAGCTCGGTTGTCTCTCTTTTGTAGGTCTGCTAATGCATTTTTAGTAGCCTTTTTGCATTGTCACTTTTAGTCAACTACTGATGAATTGGGAGAGGTTAGACAGGAACAAAAAGGGTCTCTGAATACTCAATTCTTGTTTGTTCTTATAGGCAGTTCTTTTTAGTTCTTTTTCCCATGCTTTACGCTGATTCATTTGTGGACGTCTCTTTATTTACACAATGAATTTCCTCGTTGCAGCTCGAACGGGGACAACACGGTGTAGAGCCTTTTGTTGTAGCTAACTTTCCAACTAAGAAGTATAGTGATGAATACTTCTCATCCATGAGAAATGCTCAGTATGTTCTCCTTCATTTCACAGTTTCTCACAGCGTTGGTTTCATGATTTCTCTAGAAAATCTCTTTATCTGATATATATATCACGAATCATATATTGCCTCCAGATGGGCAGTGACATATGATGATATTTGTTTCCTCTGGATAAGATTGGATAAGATTCTATTATGGTGTCTCTTTAACGTAAAGTATACTGATTTTATCTGTAATGACCTAAATGACCTAAAGTAGACAATCTCTGCTAGTGGTGGGTTTGAGCTTTTACAAATGGTATCAGAGCCTGATACCGAACGGTATGCCAGCTAGGACGATGGGCCTAAGGGAGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGAGAACGAAACATTCCTTATATGAGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAAAACCATGAGGCTGACAGCAATGTGTAACGAGCCAAAACAGACAATATCTACTAGCAGTAGGCTTGGGCTATTACATTATCAAGGAATAGAAAGCGAATGAGGACTAAATGCTTTACCCAAGGGAGTACGATGAGGTTAAAATGAATTGATCTTGTAGTTGATTGGTTTTTCCCTAAGCATAATCATTTGTGAATATTGAGTGGTAGGATGAGGTGTCACAAACTAGATATTTAGCCGTCACACTGTTCAGGTGGAAAAGCAAAAAGGAGGAACAAACAGGTTGGGCCATGTTGGTATTGCTCGTGAGAGTGATTGATGGCCTCTTGAATAAATATCTTCAAAAGTTTGTAGAATGGTGATTCTTTTATGAGATATTTTGGTAAGTTGGCTTCAAACGTAGTTTTAATCAGCCTGGGCCCTTAGCAATAGATGAGGAAAAAAGGAGTTACTAGTTAAATCTCGTACGGTTTGGAACGAACGCTACTATGTTAATGTAGTGCCACTTTCTCTCTCTTAAATACATCTACTAGTTGTTGTAAATATCTTTCCCATCGTGCTCGAGAACCTCTTGTATTAGTTCATGTATGGTTAAGGAAAAGATATAGGCGAAGCTCGAACTCGATAACCACCTATTCTCTTCCCCTGCCAAAAGATGCCCTGCTCCCCTAACCATGTTTACAGAACTGTATCTCACTCGTATCTCTCTAATGAACCTCTTAATTAAATGGGTCTCACTTATACCAGATGTCTTGTAACAACCCAAGTTCACCGCTAGCAGATTTTGTTTGCTTTGACCTATTTTGTATCGCCGTTAGCCTTACGGTCTTAAAATGCATCTGCTAGGGAGAGGTTTTCACACTCTTATAAAGAATGTTTCGTTCCCATCTCCAACCGATGTGGGATCTCACGTGCCCTCTCCCTTACTCACAGATCAAGCCTCATTAGCTCTCCCCCCTTTCCTACCATACACCTCCAAAATAGGACCTCTGTTTGGCACTTTAGGGAGGTTAAGTTCTCCTTTCTCTTCAGTTTCTGATGGCGCTGTTGAAAACATGAGGCAAGAGAATAGGCTGCCCACAGCTGAAATAGGGCTATAGGACGTAATCTTATAGTTTATATGCTTTGGTCAATTGAGCTAAGTTTTGAAAATCTAATACCGACCGATTGGTGACGTTAGCAAAGTGTAAAAGGTATCATGAAAACATAAGCATGGTGATGTTTCTTCTCCTTCTGTGTTTTAGTAATGGCTTCCTCTCTAGTACCATTCTTGTATCGGTACGAAAAAGTTGAAGGAATAAGACGGTTCAAAACCGAGCTTAATGGTTTGTTTCTATGTTTAAAATGGCAGATGCACAGTTTGCTTAGCAGATTATCACAGTGAAGACTTATTGCGCATTCTCCCCTACTGTGGACACTTCTTCCATGTGACCTGCATAGACATATGGCTGCATCGGCATTCAACGTGCCCAGTTTGTCGTACATCGTTACGTGAGGTCCCAGACAAGAAACGAACATTACAACCGTTGTTTAGTTCAGCCATTCGCTCTCATTACAACCTCAACTCAGACGTCTGTGCATATCCCTGCCATGGGTTCCCATTAAGCGACCATGAAAACACTGGGTTGGAACCAATCCAAGAGAACCAGGCTAACGAAGCAGCGGATCCGATAGAGAACGCTTCCTCGTTTACCGAAGGTAACCTGAATAGTAAAGGCTCAAGAAACAAAAATGTAGTAAGTCCATCAAATGCTTGAGAGTTTCTCTGTGGTTGGTTTGTGATAGGAGTTTGGATTGGTAAGAGAGCTGTGTCCCAAAAGTAG

mRNA sequence

ATGATGTCTTCTGGTGTAAATTTGGTGATGACTGTGATTGGATTCACTGTGAGTACTTTGTTCATCGTGTTCGTCTGCACGAGGCTTGTTTGTGCTCGGATTCATCTCAATGCTTCAAGGCGCTCCTTCCTTGTCGCTTCTAGATCCGATCTCAGTGGGCTCGAACGGGGACAACACGGTGTAGAGCCTTTTGTTGTAGCTAACTTTCCAACTAAGAAGTATAGTGATGAATACTTCTCATCCATGAGAAATGCTCAATGCACAGTTTGCTTAGCAGATTATCACAGTGAAGACTTATTGCGCATTCTCCCCTACTGTGGACACTTCTTCCATGTGACCTGCATAGACATATGGCTGCATCGGCATTCAACGTGCCCAGTTTGTCGTACATCGTTACGTGAGGTCCCAGACAAGAAACGAACATTACAACCGTTGTTTAGTTCAGCCATTCGCTCTCATTACAACCTCAACTCAGACGTCTGTGCATATCCCTGCCATGGGTTCCCATTAAGCGACCATGAAAACACTGGGTTGGAACCAATCCAAGAGAACCAGGCTAACGAAGCAGCGGATCCGATAGAGAACGCTTCCTCGTTTACCGAAGGAGTTTGGATTGGTAAGAGAGCTGTGTCCCAAAAGTAG

Coding sequence (CDS)

ATGATGTCTTCTGGTGTAAATTTGGTGATGACTGTGATTGGATTCACTGTGAGTACTTTGTTCATCGTGTTCGTCTGCACGAGGCTTGTTTGTGCTCGGATTCATCTCAATGCTTCAAGGCGCTCCTTCCTTGTCGCTTCTAGATCCGATCTCAGTGGGCTCGAACGGGGACAACACGGTGTAGAGCCTTTTGTTGTAGCTAACTTTCCAACTAAGAAGTATAGTGATGAATACTTCTCATCCATGAGAAATGCTCAATGCACAGTTTGCTTAGCAGATTATCACAGTGAAGACTTATTGCGCATTCTCCCCTACTGTGGACACTTCTTCCATGTGACCTGCATAGACATATGGCTGCATCGGCATTCAACGTGCCCAGTTTGTCGTACATCGTTACGTGAGGTCCCAGACAAGAAACGAACATTACAACCGTTGTTTAGTTCAGCCATTCGCTCTCATTACAACCTCAACTCAGACGTCTGTGCATATCCCTGCCATGGGTTCCCATTAAGCGACCATGAAAACACTGGGTTGGAACCAATCCAAGAGAACCAGGCTAACGAAGCAGCGGATCCGATAGAGAACGCTTCCTCGTTTACCGAAGGAGTTTGGATTGGTAAGAGAGCTGTGTCCCAAAAGTAG

Protein sequence

MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHGVEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEPIQENQANEAADPIENASSFTEGVWIGKRAVSQK

Homology

[Close]

BLAST of Csor.00g287810 vs. ExPASy Swiss-Prot
Match: O64762 (RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 6.7e-15
Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 8   LVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFL---VASRSDLSGLERGQHGVEPF 67
           LV+T+I F +  + +  VC R    + +   S   F    V SR+ ++ +     G++  
Sbjct: 16  LVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAV----RGLDEA 75

Query: 68  VVANFPTKKYSD--EYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRH 127
           ++ +FPT  YS+  E    +   +C VC+ ++   + LR++P C H FH  C+ +WL  H
Sbjct: 76  IINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDH 135

Query: 128 STCPVCRTSLREVPDKKRTLQP 145
           STCP+CR  L   P ++  L P
Sbjct: 136 STCPLCRVDLCLQPGERSYLNP 153

[Close]

BLAST of Csor.00g287810 vs. ExPASy Swiss-Prot
Match: Q8W571 (RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 1.5e-14
Identity = 45/132 (34.09%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 11  TVIGFTVSTLFIVFVCTRLV--CARIHLNASRRSFLVASRSDLSGLERGQHGVEPFVVAN 70
           TV    V+  F+  + +  +  CAR + ++S R F   +R++     RG  G++  VV +
Sbjct: 48  TVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYF--RNRANDGSSRRG--GLDNAVVES 107

Query: 71  FPTKKYSDEYFSSM--RNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRHSTCP 130
           FP   YS    S +  ++ +C +CL +    + +R+LP C H FH+ CID WL+ H+TCP
Sbjct: 108 FPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCP 167

Query: 131 VCRTSLREVPDK 139
           VCR++L    +K
Sbjct: 168 VCRSNLTAKSNK 175

[Close]

BLAST of Csor.00g287810 vs. ExPASy Swiss-Prot
Match: Q8RXX9 (E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 4.4e-14
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 60  GVEPFVVANFPTKKYSDEYFSSMRNA--QCTVCLADYHSEDLLRILPYCGHFFHVTCIDI 119
           G++  VV  FPT  YSD     +     +C +CL ++  ++ LR+LP C H FH  CID 
Sbjct: 99  GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDA 158

Query: 120 WLHRHSTCPVCRTSLREVPDKKRTLQP 145
           WL  H TCPVCR +L E   +  +++P
Sbjct: 159 WLEAHVTCPVCRANLAEQVAEGESVEP 185

[Close]

BLAST of Csor.00g287810 vs. ExPASy Swiss-Prot
Match: P0C034 (RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-14
Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 17  VSTLFIVFVCTRLVCARIHL---NASRRS--FLVASRSDLSGLERG--QHGVEPFVVANF 76
           V  L  + +C  + C  +H     A RRS  F+++         RG    G++   +  F
Sbjct: 58  VMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMF 117

Query: 77  PTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRHSTCPVCR 136
           P   YS E      + +C +CL+D+ S + LR+LP C H FHV CID WL +H TCP CR
Sbjct: 118 PVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCR 177

Query: 137 TSLREVPDK 139
             L E   K
Sbjct: 178 NCLVETCQK 186

[Close]

BLAST of Csor.00g287810 vs. ExPASy Swiss-Prot
Match: Q9LM69 (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 5.7e-14
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 60  GVEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWL 119
           G++  V+ + P   +S E   S + A+C +CLA++ + D LR+LP CGH FHV CID WL
Sbjct: 84  GLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWL 143

Query: 120 HRHSTCPVCRTSL 133
             HS+CP CR  L
Sbjct: 144 GSHSSCPSCRQIL 156

[Close]

BLAST of Csor.00g287810 vs. NCBI nr
Match: KAG6602265.1 (RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 438 bits (1127), Expect = 2.81e-155
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEGVWIGKRAVSQK 213
           IQENQANEAADPIENASSFTEGVWIGKRAVSQK
Sbjct: 181 IQENQANEAADPIENASSFTEGVWIGKRAVSQK 213

[Close]

BLAST of Csor.00g287810 vs. NCBI nr
Match: KAG7032948.1 (RING-H2 finger protein ATL7 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 416 bits (1068), Expect = 3.58e-146
Identity = 202/202 (100.00%), Postives = 202/202 (100.00%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEG 202
           IQENQANEAADPIENASSFTEG
Sbjct: 181 IQENQANEAADPIENASSFTEG 202

[Close]

BLAST of Csor.00g287810 vs. NCBI nr
Match: XP_022990455.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 408 bits (1048), Expect = 4.01e-143
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHL+ASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLHASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGH FHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHSFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEG 202
           IQENQAN AADPIENASSFTEG
Sbjct: 181 IQENQANGAADPIENASSFTEG 202

[Close]

BLAST of Csor.00g287810 vs. NCBI nr
Match: XP_023524777.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 408 bits (1048), Expect = 4.01e-143
Identity = 199/202 (98.51%), Postives = 199/202 (98.51%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVC RLVCARIHLNASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCARLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGH FHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHSFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEG 202
           IQENQAN AADPIENASSFTEG
Sbjct: 181 IQENQANGAADPIENASSFTEG 202

[Close]

BLAST of Csor.00g287810 vs. NCBI nr
Match: XP_022960827.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 407 bits (1046), Expect = 8.10e-143
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADY+SEDLLRILPYCGH FHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYNSEDLLRILPYCGHSFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEG 202
           IQENQAN AADPIENASSFTEG
Sbjct: 181 IQENQANGAADPIENASSFTEG 202

[Close]

BLAST of Csor.00g287810 vs. ExPASy TrEMBL
Match: A0A6J1JQ55 (RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111487309 PE=4 SV=1)

HSP 1 Score: 408 bits (1048), Expect = 1.94e-143
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHL+ASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLHASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGH FHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHSFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEG 202
           IQENQAN AADPIENASSFTEG
Sbjct: 181 IQENQANGAADPIENASSFTEG 202

[Close]

BLAST of Csor.00g287810 vs. ExPASy TrEMBL
Match: A0A6J1H8I0 (RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111461516 PE=4 SV=1)

HSP 1 Score: 407 bits (1046), Expect = 3.92e-143
Identity = 199/202 (98.51%), Postives = 200/202 (99.01%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG
Sbjct: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADY+SEDLLRILPYCGH FHVTCIDIWLH
Sbjct: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYNSEDLLRILPYCGHSFHVTCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP
Sbjct: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180

Query: 181 IQENQANEAADPIENASSFTEG 202
           IQENQAN AADPIENASSFTEG
Sbjct: 181 IQENQANGAADPIENASSFTEG 202

[Close]

BLAST of Csor.00g287810 vs. ExPASy TrEMBL
Match: A0A6J1BZK6 (RING-H2 finger protein ATL38-like OS=Momordica charantia OX=3673 GN=LOC111006678 PE=4 SV=1)

HSP 1 Score: 348 bits (892), Expect = 1.24e-119
Identity = 170/210 (80.95%), Postives = 181/210 (86.19%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSG+NLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSF +ASRSD +GLERG HG
Sbjct: 1   MMSSGINLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFAIASRSDFNGLERGLHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           +E F VANFPTKKYSDEYFSSMRNAQCTVCLADYH ED+LRILPYCGH FHV CIDIWLH
Sbjct: 61  LEAFAVANFPTKKYSDEYFSSMRNAQCTVCLADYHCEDILRILPYCGHSFHVNCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLEP 180
           +HSTCPVCR SLRE PDKKR +QPLFSSAIRSHY LNS+VC +PC GFPL D EN+GLEP
Sbjct: 121 QHSTCPVCRVSLREAPDKKRPMQPLFSSAIRSHYTLNSNVCTHPCDGFPLRDLENSGLEP 180

Query: 181 IQENQAN---EAADPIENASSFTEGVWIGK 207
           IQEN  +     AD  ENASSF EG  I K
Sbjct: 181 IQENHCSPGANGADSTENASSFVEGNSISK 210

[Close]

BLAST of Csor.00g287810 vs. ExPASy TrEMBL
Match: A0A6J1FMG8 (putative RING-H2 finger protein ATL71 OS=Cucurbita moschata OX=3662 GN=LOC111445538 PE=4 SV=1)

HSP 1 Score: 337 bits (864), Expect = 2.28e-115
Identity = 167/205 (81.46%), Postives = 182/205 (88.78%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSG+NLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSF +ASRSDLSGLERG HG
Sbjct: 1   MMSSGINLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFPIASRSDLSGLERGLHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           +EP VVANFPTKKYSDEYFSSMRN+QCTVCLADYHSEDLLRILPYCGH FHV CIDIWLH
Sbjct: 61  LEPLVVANFPTKKYSDEYFSSMRNSQCTVCLADYHSEDLLRILPYCGHSFHVNCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLE- 180
           ++ TCPVCR SLR+VPDKKRT+QPLFSSAIRSHYNLNSD  A+PCH FPL D EN+GL+ 
Sbjct: 121 QNLTCPVCRISLRDVPDKKRTMQPLFSSAIRSHYNLNSDAYAHPCHEFPLQDLENSGLDQ 180

Query: 181 PIQEN-----QANEAADPIENASSF 199
           PIQ+      + N AA+ +EN SSF
Sbjct: 181 PIQQENRRSPRTNGAAEALENTSSF 205

[Close]

BLAST of Csor.00g287810 vs. ExPASy TrEMBL
Match: A0A6J1K062 (putative RING-H2 finger protein ATL71 OS=Cucurbita maxima OX=3661 GN=LOC111489441 PE=4 SV=1)

HSP 1 Score: 337 bits (863), Expect = 3.12e-115
Identity = 168/204 (82.35%), Postives = 182/204 (89.22%), Query Frame = 0


Query: 1   MMSSGVNLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFLVASRSDLSGLERGQHG 60
           MMSSG+NLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSF +ASRSDLSGLERG HG
Sbjct: 1   MMSSGINLVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFPIASRSDLSGLERGLHG 60

Query: 61  VEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLH 120
           +EP VVANFPTKKYSDEYFSSMRN+QCTVCLADYHSEDLLRILP CGH FHV CIDIWLH
Sbjct: 61  LEPLVVANFPTKKYSDEYFSSMRNSQCTVCLADYHSEDLLRILPNCGHSFHVNCIDIWLH 120

Query: 121 RHSTCPVCRTSLREVPDKKRTLQPLFSSAIRSHYNLNSDVCAYPCHGFPLSDHENTGLE- 180
           ++ TCPVCR SLR+VPDKKRT+QPLFSSAIRSHYNLNSD  A+PCH FPL D EN+GL+ 
Sbjct: 121 QNLTCPVCRISLRDVPDKKRTMQPLFSSAIRSHYNLNSDAYAHPCHEFPLRDLENSGLDQ 180

Query: 181 PIQENQ----ANEAADPIENASSF 199
           PIQEN+     N AA+ +EN SSF
Sbjct: 181 PIQENRRSPRTNGAAEHLENTSSF 204

[Close]

BLAST of Csor.00g287810 vs. TAIR 10
Match: AT2G34990.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.4 bits (202), Expect = 4.8e-16
Identity = 44/142 (30.99%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 8   LVMTVIGFTVSTLFIVFVCTRLVCARIHLNASRRSFL---VASRSDLSGLERGQHGVEPF 67
           LV+T+I F +  + +  VC R    + +   S   F    V SR+ ++ +     G++  
Sbjct: 16  LVITIILFAIFIVGLASVCFRWTSRQFYSQESINPFTDSDVESRTSITAV----RGLDEA 75

Query: 68  VVANFPTKKYSD--EYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRH 127
           ++ +FPT  YS+  E    +   +C VC+ ++   + LR++P C H FH  C+ +WL  H
Sbjct: 76  IINSFPTFLYSEVKERRIGIGGVECAVCICEFEDHETLRLMPECCHVFHADCVSVWLSDH 135

Query: 128 STCPVCRTSLREVPDKKRTLQP 145
           STCP+CR  L   P ++  L P
Sbjct: 136 STCPLCRVDLCLQPGERSYLNP 153

[Close]

BLAST of Csor.00g287810 vs. TAIR 10
Match: AT4G40070.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 1.1e-15
Identity = 45/132 (34.09%), Postives = 74/132 (56.06%), Query Frame = 0


Query: 11  TVIGFTVSTLFIVFVCTRLV--CARIHLNASRRSFLVASRSDLSGLERGQHGVEPFVVAN 70
           TV    V+  F+  + +  +  CAR + ++S R F   +R++     RG  G++  VV +
Sbjct: 48  TVFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYF--RNRANDGSSRRG--GLDNAVVES 107

Query: 71  FPTKKYSDEYFSSM--RNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRHSTCP 130
           FP   YS    S +  ++ +C +CL +    + +R+LP C H FH+ CID WL+ H+TCP
Sbjct: 108 FPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCP 167

Query: 131 VCRTSLREVPDK 139
           VCR++L    +K
Sbjct: 168 VCRSNLTAKSNK 175

[Close]

BLAST of Csor.00g287810 vs. TAIR 10
Match: AT3G05200.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 3.1e-15
Identity = 35/87 (40.23%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 60  GVEPFVVANFPTKKYSDEYFSSMRNA--QCTVCLADYHSEDLLRILPYCGHFFHVTCIDI 119
           G++  VV  FPT  YSD     +     +C +CL ++  ++ LR+LP C H FH  CID 
Sbjct: 99  GLDVSVVETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDA 158

Query: 120 WLHRHSTCPVCRTSLREVPDKKRTLQP 145
           WL  H TCPVCR +L E   +  +++P
Sbjct: 159 WLEAHVTCPVCRANLAEQVAEGESVEP 185

[Close]

BLAST of Csor.00g287810 vs. TAIR 10
Match: AT1G20823.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-15
Identity = 34/73 (46.58%), Postives = 47/73 (64.38%), Query Frame = 0


Query: 60  GVEPFVVANFPTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWL 119
           G++  V+ + P   +S E   S + A+C +CLA++ + D LR+LP CGH FHV CID WL
Sbjct: 84  GLKKKVLQSLPKLTFSPESPESEKFAECAICLAEFSAGDELRVLPQCGHGFHVACIDTWL 143

Query: 120 HRHSTCPVCRTSL 133
             HS+CP CR  L
Sbjct: 144 GSHSSCPSCRQIL 156

[Close]

BLAST of Csor.00g287810 vs. TAIR 10
Match: AT1G49220.1 (RING/U-box superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 4.0e-15
Identity = 46/129 (35.66%), Postives = 64/129 (49.61%), Query Frame = 0


Query: 17  VSTLFIVFVCTRLVCARIHL---NASRRS--FLVASRSDLSGLERG--QHGVEPFVVANF 76
           V  L  + +C  + C  +H     A RRS  F+++         RG    G++   +  F
Sbjct: 58  VMMLLSILICGIICCLGLHYIIRCALRRSTRFMISEPVPSLSSTRGSSNKGIKKKALRMF 117

Query: 77  PTKKYSDEYFSSMRNAQCTVCLADYHSEDLLRILPYCGHFFHVTCIDIWLHRHSTCPVCR 136
           P   YS E      + +C +CL+D+ S + LR+LP C H FHV CID WL +H TCP CR
Sbjct: 118 PVVSYSPEMNLPGLDEECVICLSDFVSGEQLRLLPKCNHGFHVRCIDKWLQQHLTCPKCR 177

Query: 137 TSLREVPDK 139
             L E   K
Sbjct: 178 NCLVETCQK 186

The following BLAST results are available for this feature:

BLAST of Csor.00g287810 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64762	6.7e-15	30.99	RING-H2 finger protein ATL38 OS=Arabidopsis thaliana OX=3702 GN=ATL38 PE=2 SV=1	[more]
Q8W571	1.5e-14	34.09	RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3	[more]
Q8RXX9	4.4e-14	40.23	E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV...	[more]
P0C034	5.7e-14	35.66	RING-H2 finger protein ATL10 OS=Arabidopsis thaliana OX=3702 GN=ATL10 PE=2 SV=1	[more]
Q9LM69	5.7e-14	46.58	RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1	[more]

BLAST of Csor.00g287810 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6602265.1	2.81e-155	100.00	RING-H2 finger protein ATL7, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7032948.1	3.58e-146	100.00	RING-H2 finger protein ATL7 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022990455.1	4.01e-143	98.51	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]
XP_023524777.1	4.01e-143	98.51	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022960827.1	8.10e-143	98.51	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]

BLAST of Csor.00g287810 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JQ55	1.94e-143	98.51	RING-H2 finger protein ATL74-like OS=Cucurbita maxima OX=3661 GN=LOC111487309 PE...	[more]
A0A6J1H8I0	3.92e-143	98.51	RING-H2 finger protein ATL74-like OS=Cucurbita moschata OX=3662 GN=LOC111461516 ...	[more]
A0A6J1BZK6	1.24e-119	80.95	RING-H2 finger protein ATL38-like OS=Momordica charantia OX=3673 GN=LOC111006678...	[more]
A0A6J1FMG8	2.28e-115	81.46	putative RING-H2 finger protein ATL71 OS=Cucurbita moschata OX=3662 GN=LOC111445...	[more]
A0A6J1K062	3.12e-115	82.35	putative RING-H2 finger protein ATL71 OS=Cucurbita maxima OX=3661 GN=LOC11148944...	[more]

BLAST of Csor.00g287810 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34990.1	4.8e-16	30.99	RING/U-box superfamily protein	[more]
AT4G40070.1	1.1e-15	34.09	RING/U-box superfamily protein	[more]
AT3G05200.1	3.1e-15	40.23	RING/U-box superfamily protein	[more]
AT1G20823.1	4.0e-15	46.58	RING/U-box superfamily protein	[more]
AT1G49220.1	4.0e-15	35.66	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 87..128 e-value: 2.2E-6 score: 37.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 86..129 e-value: 1.3E-12 score: 47.8
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 87..129 score: 12.25323
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 51..135 e-value: 5.8E-21 score: 76.0
None	No IPR available	PANTHER	PTHR47035:SF3	OS11G0150450 PROTEIN	coord: 1..195
None	No IPR available	PANTHER	PTHR47035	OS11G0150450 PROTEIN	coord: 1..195
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 86..129 e-value: 4.31014E-16 score: 67.3269
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 86..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csor.00g287810.m01	Csor.00g287810.m01	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane