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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSinitialstart_codonpolypeptideintroninternalterminalstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAGGGTGATCGCCGGTCCATGACTAGCAGCAAAGCGGGACCCACTCCTGAGAAGACCATTACTTCATCTTCTCTGATCGCTTCAGGATTGGTAAGCAACTCAGCGTTATTTCCTTCTTGTACACTTGTATAGTCTCCATCATTTGTCTTTCGAGTTCTCTTTCACCATTTGGTGCTTTCAAAGTCTTCTTCATGTGTGCAGTGACTTGTTTGTGTGCAGGACGGCTTGTATTTGGGCGTTGGAGCAAGGTTAGTACTTATAAACTGGCAGTCACTACTACGAAGGCTTGTTATAGTATATTCTTCGTCATTAATTAATATCCTTGATGAGTTTCTGAAGCAAGCGATCGAGTGGGGCTGTTCAAAATATAATTTGATGTGAGTGGTATGAATGGTTATTTCTTATGGCTTTTAGATATTTTCCTTTCTACTCTGTTTCAATTTCATGGGGCTTCACCTGTACTGTCGAGGTTTACTTGCTCTCAGAGTTTCAGTTTGTTCAGGTGTTCATTGCTGGAATCCAGCGTGTGTTCTGA mRNA sequence ATGCAGGGTGATCGCCGGTCCATGACTAGCAGCAAAGCGGGACCCACTCCTGAGAAGACCATTACTTCATCTTCTCTGATCGCTTCAGGATTGGACGGCTTGTATTTGGGCGTTGGAGCAAGATATTTTCCTTTCTACTCTGTTTCAATTTCATGGGGCTTCACCTGTACTGTCGAGGTTTACTTGCTCTCAGAGTTTCAGTTTGTTCAGGTGTTCATTGCTGGAATCCAGCGTGTGTTCTGA Coding sequence (CDS) ATGCAGGGTGATCGCCGGTCCATGACTAGCAGCAAAGCGGGACCCACTCCTGAGAAGACCATTACTTCATCTTCTCTGATCGCTTCAGGATTGGACGGCTTGTATTTGGGCGTTGGAGCAAGATATTTTCCTTTCTACTCTGTTTCAATTTCATGGGGCTTCACCTGTACTGTCGAGGTTTACTTGCTCTCAGAGTTTCAGTTTGTTCAGGTGTTCATTGCTGGAATCCAGCGTGTGTTCTGA Protein sequence MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEVYLLSEFQFVQVFIAGIQRVF
Homology
BLAST of Csor.00g286800 vs. NCBI nr
Match: KAG6589332.1 (hypothetical protein SDJN03_14755, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 157 bits (398), Expect = 2.07e-48 Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0 Query: 1 MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEV 60 MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEV Sbjct: 1 MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEV 60
Query: 61 YLLSEFQFVQVFIAGIQRVF 80 YLLSEFQFVQVFIAGIQRVF Sbjct: 61 YLLSEFQFVQVFIAGIQRVF 80
BLAST of Csor.00g286800 vs. NCBI nr
Match: KAG7023017.1 (hypothetical protein SDJN02_14039, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 129 bits (323), Expect = 4.22e-37 Identity = 69/80 (86.25%), Postives = 69/80 (86.25%), Query Frame = 0 Query: 1 MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEV 60 MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEV Sbjct: 1 MQGDRRSMTSSKAGPTPEKTITSSSLIASGLDGLYLGVGARYFPFYSVSISWGFTCTVEV 60
Query: 61 YLLSEFQFVQVFIAGIQRVF 80 FIAGIQRVF Sbjct: 61 -----------FIAGIQRVF 69
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6589332.1 | 2.07e-48 | 100.00 | hypothetical protein SDJN03_14755, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAG7023017.1 | 4.22e-37 | 86.25 | hypothetical protein SDJN02_14039, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
InterPro
Analysis Name: InterPro Annotations of Silver-seed gourd (sororia) v1
Date Performed: 2021-10-25
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..21 |
Relationships
The following mRNA feature(s) are a part of this gene:
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