Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSsinglepolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGCCCTCTCCCCGACGATTCGCCCCCAGAAGACGACCTCATCTCCTCGCTCCACCGCCACGGAACCGCCACATTCTCCGCTTCATCCACCTGGAAGATTCGAACCAACGAATTGGCTCAAGATGAGATTCTAAGAGAACGAAGGGCCGCCATGGGGGTCGGCAAGTTCATGGGCCGACGGCTTTCTTTCGACGATGTCGACATGGGTCATGCCCTGAATACCGAGTTGTTGCACGGGAATTACTGGAATGGTTTTGTTCAGGATCAGATCGTCGCTCCATCGGTTCAATCATCCGATTCGAGCCAAGATAACCGTAACAGAGAAACGGGCAAAGAAGAAGAAGAAGAAGAAGTTCCCGTCTGTTTAAACGGTCTCTCTTATTCCTCTGCCTCCTCCTCCTCCTCTTCTTCTTCAGGATCATTTGCTCCTCCCCAAGTGAAAGAAGAAGAAAATGTGAGGGCGAGCGTTGGTGGGAAGAGGGAAATTGGGAATAGGTGCAGAATAGGAACGTGGGAAGTGGGTTTAGCTTGCCTTGCCATTGCTTCGGTTGTTATGCTAATATTTTCAGCTCGCTGTTTAGAGTTCGGAGCATACGAGGAAGAACGATTACCATTTCTCTTGGTTCCAACTTGA
mRNA sequence
ATGCGCCCTCTCCCCGACGATTCGCCCCCAGAAGACGACCTCATCTCCTCGCTCCACCGCCACGGAACCGCCACATTCTCCGCTTCATCCACCTGGAAGATTCGAACCAACGAATTGGCTCAAGATGAGATTCTAAGAGAACGAAGGGCCGCCATGGGGGTCGGCAAGTTCATGGGCCGACGGCTTTCTTTCGACGATGTCGACATGGGTCATGCCCTGAATACCGAGTTGTTGCACGGGAATTACTGGAATGGTTTTGTTCAGGATCAGATCGTCGCTCCATCGGTTCAATCATCCGATTCGAGCCAAGATAACCGTAACAGAGAAACGGGCAAAGAAGAAGAAGAAGAAGAAGTTCCCGTCTGTTTAAACGGTCTCTCTTATTCCTCTGCCTCCTCCTCCTCCTCTTCTTCTTCAGGATCATTTGCTCCTCCCCAAGTGAAAGAAGAAGAAAATGTGAGGGCGAGCGTTGGTGGGAAGAGGGAAATTGGGAATAGGTGCAGAATAGGAACGTGGGAAGTGGGTTTAGCTTGCCTTGCCATTGCTTCGGTTGTTATGCTAATATTTTCAGCTCGCTGTTTAGAGTTCGGAGCATACGAGGAAGAACGATTACCATTTCTCTTGGTTCCAACTTGA
Coding sequence (CDS)
ATGCGCCCTCTCCCCGACGATTCGCCCCCAGAAGACGACCTCATCTCCTCGCTCCACCGCCACGGAACCGCCACATTCTCCGCTTCATCCACCTGGAAGATTCGAACCAACGAATTGGCTCAAGATGAGATTCTAAGAGAACGAAGGGCCGCCATGGGGGTCGGCAAGTTCATGGGCCGACGGCTTTCTTTCGACGATGTCGACATGGGTCATGCCCTGAATACCGAGTTGTTGCACGGGAATTACTGGAATGGTTTTGTTCAGGATCAGATCGTCGCTCCATCGGTTCAATCATCCGATTCGAGCCAAGATAACCGTAACAGAGAAACGGGCAAAGAAGAAGAAGAAGAAGAAGTTCCCGTCTGTTTAAACGGTCTCTCTTATTCCTCTGCCTCCTCCTCCTCCTCTTCTTCTTCAGGATCATTTGCTCCTCCCCAAGTGAAAGAAGAAGAAAATGTGAGGGCGAGCGTTGGTGGGAAGAGGGAAATTGGGAATAGGTGCAGAATAGGAACGTGGGAAGTGGGTTTAGCTTGCCTTGCCATTGCTTCGGTTGTTATGCTAATATTTTCAGCTCGCTGTTTAGAGTTCGGAGCATACGAGGAAGAACGATTACCATTTCTCTTGGTTCCAACTTGA
Protein sequence
MRPLPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRLSFDDVDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVPVCLNGLSYSSASSSSSSSSGSFAPPQVKEEENVRASVGGKREIGNRCRIGTWEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT
Homology
BLAST of Csor.00g286400 vs. NCBI nr
Match:
KAG6589372.1 (hypothetical protein SDJN03_14795, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 419 bits (1077), Expect = 1.01e-147
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0
Query: 1 MRPLPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGR 60
MRPLPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGR
Sbjct: 1 MRPLPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGR 60
Query: 61 RLSFDDVDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 120
RLSFDDVDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVP
Sbjct: 61 RLSFDDVDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 120
Query: 121 VCLNGLSYSSASSSSSSSSGSFAPPQVKEEENVRASVGGKREIGNRCRIGTWEVGLACLA 180
VCLNGLSYSSASSSSSSSSGSFAPPQVKEEENVRASVGGKREIGNRCRIGTWEVGLACLA
Sbjct: 121 VCLNGLSYSSASSSSSSSSGSFAPPQVKEEENVRASVGGKREIGNRCRIGTWEVGLACLA 180
Query: 181 IASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
IASVVMLIFSARCLEFGAYEEERLPFLLVPT
Sbjct: 181 IASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
BLAST of Csor.00g286400 vs. NCBI nr
Match:
KAA0057761.1 (hypothetical protein E6C27_scaffold274G00440 [Cucumis melo var. makuwa])
HSP 1 Score: 195 bits (496), Expect = 2.06e-59
Identity = 125/220 (56.82%), Postives = 145/220 (65.91%), Query Frame = 0
Query: 4 LPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRLS 63
LP ED+LISSL+RHGT S WKIRTN+LA D+I RERRAA+ G GRRLS
Sbjct: 2 LPFSQQEEDELISSLNRHGTPP----SNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLS 61
Query: 64 FDD-VDMG-HALNTELLHGNYWNGFVQD-QIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 123
+DD VDM H NT+ LHG+Y + F QD QI+ S SSDS EE+ E+VP
Sbjct: 62 YDDAVDMSLHLKNTDFLHGDYLDEFPQDDQIIIQS--SSDSG----------EEKAEQVP 121
Query: 124 VCLNGLSYSSASSSSSSSSGSFAPPQVKEE--------ENVRASVGGKR-EIGNRCRIGT 183
VCLN LSYS ASSSSSSSSG PPQ KEE ENV A VG K+ E N C+IG
Sbjct: 122 VCLNALSYSCASSSSSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKIGK 181
Query: 184 WEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
W+VGLA LA+ASV M++FS RCL F E+E+ PFLLVPT
Sbjct: 182 WKVGLAWLAVASVPMVVFSLRCLGFHD-EDEQFPFLLVPT 204
BLAST of Csor.00g286400 vs. NCBI nr
Match:
TYJ98442.1 (hypothetical protein E5676_scaffold350G00430 [Cucumis melo var. makuwa])
HSP 1 Score: 188 bits (477), Expect = 1.66e-56
Identity = 124/222 (55.86%), Postives = 144/222 (64.86%), Query Frame = 0
Query: 4 LPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRLS 63
LP ED+LISSL+RHGT S WKIRTN+LA D+I RERRAA+ G GRRLS
Sbjct: 2 LPFSQQEEDELISSLNRHGTPP----SNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLS 61
Query: 64 FDD-VDMG-HALNTELLHGNYWNGFVQ--DQIVAPSVQSSDSSQDNRNRETGKEEEEEEV 123
+DD VDM H NT+ LHG+Y + F DQI+ S SSDS EE+ E+V
Sbjct: 62 YDDAVDMSLHLKNTDFLHGDYLDEFPDQDDQIIIQS--SSDSG----------EEKAEQV 121
Query: 124 PVCLNGLSYSSASSSSSSSS-GSFAPPQVKEE--------ENVRASVGGKR-EIGNRCRI 183
PVCLN LSYS ASSSSSSSS G PPQ KEE ENV A VG K+ E N C+I
Sbjct: 122 PVCLNALSYSCASSSSSSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKI 181
Query: 184 GTWEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
G W+VGLA LA+ASV M++FS RCL F E+E+ PFLLVPT
Sbjct: 182 GKWKVGLAWLAVASVPMVVFSLRCLWFHD-EDEQFPFLLVPT 206
BLAST of Csor.00g286400 vs. NCBI nr
Match:
KGN63472.1 (hypothetical protein Csa_014116 [Cucumis sativus])
HSP 1 Score: 164 bits (415), Expect = 3.27e-47
Identity = 116/220 (52.73%), Postives = 134/220 (60.91%), Query Frame = 0
Query: 4 LPDDSPPED-DLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRL 63
LP ED +LIS+L+RH T SS+WKIRTN+LA +EI ERRAA+ G RRL
Sbjct: 2 LPFSQQEEDAELISTLNRHATP----SSSWKIRTNQLAYEEIRTERRAAIASGNLKARRL 61
Query: 64 SFDD-VDMGHALNTE-LLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 123
S+DD +DM LNT LLHG+Y + QD + SSD EE+
Sbjct: 62 SYDDAIDMSLHLNTNFLLHGDYLDESPQDDDQM--IPSSDPG------------EEKAEQ 121
Query: 124 VCLNGLSYSSASSSSSSSSGSFAPPQVKE--------EENVRASVGG-KREIGNRCRIGT 183
VCLN LSYS ASSSSSS G F P Q+KE EENVRA VG K E N C+IG
Sbjct: 122 VCLNALSYSCASSSSSS--GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGN 181
Query: 184 WEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
W+VGLACLAIASV M+IFS RCL EEE+ PFLLVPT
Sbjct: 182 WKVGLACLAIASVPMVIFSLRCLGLHD-EEEQFPFLLVPT 200
BLAST of Csor.00g286400 vs. NCBI nr
Match:
XP_022134742.1 (uncharacterized protein LOC111006938 [Momordica charantia])
HSP 1 Score: 77.8 bits (190), Expect = 3.38e-14
Identity = 59/140 (42.14%), Postives = 73/140 (52.14%), Query Frame = 0
Query: 4 LPDDSPPEDD--LISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRR 63
L ++S PED+ LIS L R G+AT S SSTWKIRTNELAQ E RERRAA R+
Sbjct: 3 LHNNSGPEDEEELISYLQRRGSATLSGSSTWKIRTNELAQHEFRRERRAAAAA--IAARK 62
Query: 64 LSFDDVDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVPV 123
LS++D+ + S D +Q ++ PV
Sbjct: 63 LSYEDL----------------------------LSSEDGNQ-------------QQFPV 99
Query: 124 CLNGLSYSSASSSSSSSSGS 141
CLN LSYSSASSSSSS++ S
Sbjct: 123 CLNALSYSSASSSSSSAASS 99
BLAST of Csor.00g286400 vs. ExPASy TrEMBL
Match:
A0A5A7UWC4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G00440 PE=4 SV=1)
HSP 1 Score: 195 bits (496), Expect = 1.00e-59
Identity = 125/220 (56.82%), Postives = 145/220 (65.91%), Query Frame = 0
Query: 4 LPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRLS 63
LP ED+LISSL+RHGT S WKIRTN+LA D+I RERRAA+ G GRRLS
Sbjct: 2 LPFSQQEEDELISSLNRHGTPP----SNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLS 61
Query: 64 FDD-VDMG-HALNTELLHGNYWNGFVQD-QIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 123
+DD VDM H NT+ LHG+Y + F QD QI+ S SSDS EE+ E+VP
Sbjct: 62 YDDAVDMSLHLKNTDFLHGDYLDEFPQDDQIIIQS--SSDSG----------EEKAEQVP 121
Query: 124 VCLNGLSYSSASSSSSSSSGSFAPPQVKEE--------ENVRASVGGKR-EIGNRCRIGT 183
VCLN LSYS ASSSSSSSSG PPQ KEE ENV A VG K+ E N C+IG
Sbjct: 122 VCLNALSYSCASSSSSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKIGK 181
Query: 184 WEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
W+VGLA LA+ASV M++FS RCL F E+E+ PFLLVPT
Sbjct: 182 WKVGLAWLAVASVPMVVFSLRCLGFHD-EDEQFPFLLVPT 204
BLAST of Csor.00g286400 vs. ExPASy TrEMBL
Match:
A0A5D3BFC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00430 PE=4 SV=1)
HSP 1 Score: 188 bits (477), Expect = 8.03e-57
Identity = 124/222 (55.86%), Postives = 144/222 (64.86%), Query Frame = 0
Query: 4 LPDDSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRLS 63
LP ED+LISSL+RHGT S WKIRTN+LA D+I RERRAA+ G GRRLS
Sbjct: 2 LPFSQQEEDELISSLNRHGTPP----SNWKIRTNQLAYDDIRRERRAAIASGNLKGRRLS 61
Query: 64 FDD-VDMG-HALNTELLHGNYWNGFVQ--DQIVAPSVQSSDSSQDNRNRETGKEEEEEEV 123
+DD VDM H NT+ LHG+Y + F DQI+ S SSDS EE+ E+V
Sbjct: 62 YDDAVDMSLHLKNTDFLHGDYLDEFPDQDDQIIIQS--SSDSG----------EEKAEQV 121
Query: 124 PVCLNGLSYSSASSSSSSSS-GSFAPPQVKEE--------ENVRASVGGKR-EIGNRCRI 183
PVCLN LSYS ASSSSSSSS G PPQ KEE ENV A VG K+ E N C+I
Sbjct: 122 PVCLNALSYSCASSSSSSSSSGQLVPPQTKEEMAAKAKVEENVTAIVGEKKMETWNGCKI 181
Query: 184 GTWEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
G W+VGLA LA+ASV M++FS RCL F E+E+ PFLLVPT
Sbjct: 182 GKWKVGLAWLAVASVPMVVFSLRCLWFHD-EDEQFPFLLVPT 206
BLAST of Csor.00g286400 vs. ExPASy TrEMBL
Match:
A0A0A0LRR5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1)
HSP 1 Score: 164 bits (415), Expect = 1.58e-47
Identity = 116/220 (52.73%), Postives = 134/220 (60.91%), Query Frame = 0
Query: 4 LPDDSPPED-DLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRL 63
LP ED +LIS+L+RH T SS+WKIRTN+LA +EI ERRAA+ G RRL
Sbjct: 2 LPFSQQEEDAELISTLNRHATP----SSSWKIRTNQLAYEEIRTERRAAIASGNLKARRL 61
Query: 64 SFDD-VDMGHALNTE-LLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVP 123
S+DD +DM LNT LLHG+Y + QD + SSD EE+
Sbjct: 62 SYDDAIDMSLHLNTNFLLHGDYLDESPQDDDQM--IPSSDPG------------EEKAEQ 121
Query: 124 VCLNGLSYSSASSSSSSSSGSFAPPQVKE--------EENVRASVGG-KREIGNRCRIGT 183
VCLN LSYS ASSSSSS G F P Q+KE EENVRA VG K E N C+IG
Sbjct: 122 VCLNALSYSCASSSSSS--GKFVPLQMKEQMAAKAEVEENVRAVVGEIKMETRNGCKIGN 181
Query: 184 WEVGLACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
W+VGLACLAIASV M+IFS RCL EEE+ PFLLVPT
Sbjct: 182 WKVGLACLAIASVPMVIFSLRCLGLHD-EEEQFPFLLVPT 200
BLAST of Csor.00g286400 vs. ExPASy TrEMBL
Match:
A0A6J1C0G4 (uncharacterized protein LOC111006938 OS=Momordica charantia OX=3673 GN=LOC111006938 PE=4 SV=1)
HSP 1 Score: 77.8 bits (190), Expect = 1.63e-14
Identity = 59/140 (42.14%), Postives = 73/140 (52.14%), Query Frame = 0
Query: 4 LPDDSPPEDD--LISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRR 63
L ++S PED+ LIS L R G+AT S SSTWKIRTNELAQ E RERRAA R+
Sbjct: 3 LHNNSGPEDEEELISYLQRRGSATLSGSSTWKIRTNELAQHEFRRERRAAAAA--IAARK 62
Query: 64 LSFDDVDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVPV 123
LS++D+ + S D +Q ++ PV
Sbjct: 63 LSYEDL----------------------------LSSEDGNQ-------------QQFPV 99
Query: 124 CLNGLSYSSASSSSSSSSGS 141
CLN LSYSSASSSSSS++ S
Sbjct: 123 CLNALSYSSASSSSSSAASS 99
BLAST of Csor.00g286400 vs. ExPASy TrEMBL
Match:
A0A7N2MM31 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 4.10e-14
Identity = 79/215 (36.74%), Postives = 103/215 (47.91%), Query Frame = 0
Query: 7 DSPPEDDLISSLHRHGTATFSASSTWKIRTNELAQDEILRERRAAMGVGKFMGRRLSFDD 66
DS P L+SSL + + A WK+RTN+LA +EI RER+A + G+ GRRL D
Sbjct: 65 DSSPRS-LMSSLQKRLSPPEGA---WKVRTNDLAMEEIRRERKAVIESGRLKGRRLFEAD 124
Query: 67 ---VDMGHALNTELLHGNYWNGFVQDQIVAPSVQSSDSSQDNRNRETGKEEEEEEVPVCL 126
+MG ++ NG Q+ V SV DS D+ ETG +PVC
Sbjct: 125 ESETEMGFGWKEKIC-----NGLAQESEVR-SVSFCDSDDDHHENETGGMISNV-LPVCF 184
Query: 127 NGLSYSSASSSSSSSSGSFAPPQVK------EEENVRASVGGKRE-IGNRCRIGTWEVGL 186
SS+SS SS SS S VK +E+ V ASV +R+ G W V +
Sbjct: 185 Q-CCCSSSSSLSSLSSFSLRDEYVKGEVVVEDEKKVVASVEMRRDSYGGSGNGRRWMVVM 244
Query: 187 ACLAIASVVMLIFSARCLEFGAYEEERLPFLLVPT 211
LAIAS+V I FG Y +E +LVPT
Sbjct: 245 GWLAIASIVYAICIVPMRSFGGYRDEH-EMILVPT 266
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
KAG6589372.1 | 1.01e-147 | 100.00 | hypothetical protein SDJN03_14795, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KAA0057761.1 | 2.06e-59 | 56.82 | hypothetical protein E6C27_scaffold274G00440 [Cucumis melo var. makuwa] | [more] |
TYJ98442.1 | 1.66e-56 | 55.86 | hypothetical protein E5676_scaffold350G00430 [Cucumis melo var. makuwa] | [more] |
KGN63472.1 | 3.27e-47 | 52.73 | hypothetical protein Csa_014116 [Cucumis sativus] | [more] |
XP_022134742.1 | 3.38e-14 | 42.14 | uncharacterized protein LOC111006938 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UWC4 | 1.00e-59 | 56.82 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BFC1 | 8.03e-57 | 55.86 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A0A0LRR5 | 1.58e-47 | 52.73 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001440 PE=4 SV=1 | [more] |
A0A6J1C0G4 | 1.63e-14 | 42.14 | uncharacterized protein LOC111006938 OS=Momordica charantia OX=3673 GN=LOC111006... | [more] |
A0A7N2MM31 | 4.10e-14 | 36.74 | Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |