Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDSinitialstart_codonintroninternalterminalstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGTAAATTACTGACTGATCTTCCTCTTATTGGACTTTGTTCATCAGCCAGCGTTTCTCATTTCTCATTTGGCAAAATTCGAGATTGATTCGGAGATATTTGGTTCCCCCATGTTACAAAATGCTCTGTGGAGAACATGGAATTTTTGTATTCAATTTCCGCCGAGTGCCTAAAATTCTTCCTGAATTTGATAGATTGCAGATACTACATTCGACCTGGTTTTCATTTTCACCACTGCTGATAGATGCGTGGACTTAATCCATGTCTATGAATTTGATAGATTGCTAACTGCATTGACTTGTTGTTCACTTATGCCGATTAAGCGACTTAAATCAGAGTTTCATGGTTTATTGATAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTCTATTGTATCTTCAGCTTGTAAATTCATGTCAGTAATTTATTTTTTCTTCAAGACTCTTAGGATTACAACCAGTTAGAATTTTGTGGCAAAGATTTCATCTGGGAACCAAATATTTCTGGAAATAATTTACTTATATAAGACTTTGGAGGTAAATATATAGTAAAATTTACTAAAATATGTACAAATATTGATGAAACTGAGAAGGTCTTTAAAGATTTCAAGACAACAGTTCTGTTTGTCTTATTGTTTGTTGTATATCAGAACTAATCTAAGGAAAGATTTTGAAACTAAATAGGCAATTGAGAAAATCAAATAGTGAAACTAATAACGTTATGGAGGTTCTGTCATGGATATTATAGGTAATATGCTTCTTCCTAGAAATGACATCTTCTTTTTCTTTCAACTGCTATCTTACAAGGGTCCTATCTGCGGTGTGTTTGCAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA
mRNA sequence
ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA
Coding sequence (CDS)
ATGGAAGAGAAACCCACTAATGTTTTGTCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAGGAAACGATAGAATCCGCATTCCAGATCCTATACTCCATGAATGACGAGCTCTGCAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACAACGACTACTTCTGGTTTAACAATTGCCAGCCCAAATGCTCCATCTTCGCATTCCACTAATGGAGTTGTAAACGGCGATGCAAGTTCGGAAAGCACAAACCATCACACCGACACCAGCAGTGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCCCGTGTTCGCTACAAGAATTCAGTACTTGCACTTCGTGCTATTCTTGCTGCAATTCCCAATTCTCAGAAGGCAAAAGCACATGAATCGGGTACAAGCGGTCATGCATCGCCTGCAGACCAATCTGAAATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTATGGTTAAGAACTTGCATATAAAGCTTCTGATAGATCAACTACGAGAACTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTATGA
Protein sequence
MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTTTSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVADVSTWQSPCSV
Homology
BLAST of Csor.00g286330 vs. ExPASy Swiss-Prot
Match:
Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)
HSP 1 Score: 177.9 bits (450), Expect = 1.1e-43
Identity = 107/190 (56.32%), Postives = 139/190 (73.16%), Query Frame = 0
Query: 14 TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTTTSGLTIASPNA 73
TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST T S+A TTT
Sbjct: 13 TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATTTGS-------- 72
Query: 74 PSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--ALEEARVRYKNSVLALRAILAA 133
+ + +V+ DA++ + T+HH++++ GGG G G L+EA +RYKNSV +LRA+LAA
Sbjct: 73 ----NGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAA 132
Query: 134 IPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVAD 193
IPNSQKAKA E +G SP + EI+KLE+ +LR E+ KN+H+K LID+LREL+AD
Sbjct: 133 IPNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIAD 189
Query: 194 VSTWQSPCSV 199
+STWQSPCSV
Sbjct: 193 ISTWQSPCSV 189
BLAST of Csor.00g286330 vs. NCBI nr
Match:
XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 369 bits (948), Expect = 1.75e-128
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLRELVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. NCBI nr
Match:
XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])
HSP 1 Score: 348 bits (892), Expect = 6.02e-120
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT
Sbjct: 1 MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. NCBI nr
Match:
XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])
HSP 1 Score: 347 bits (889), Expect = 1.72e-119
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. NCBI nr
Match:
XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])
HSP 1 Score: 337 bits (864), Expect = 1.08e-115
Identity = 183/198 (92.42%), Postives = 190/198 (95.96%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEKPTNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST TT
Sbjct: 2 MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTTA 61
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGL IASPN PSSHS NGVVNGDASSEST+HHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 62 TSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 121
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKA A+ESGTSG SPADQSEIDKLEQHLS+LRKEL+VKNLHIKLLID
Sbjct: 122 ALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLID 181
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVADVSTWQSPCSV
Sbjct: 182 QLRDLVADVSTWQSPCSV 197
BLAST of Csor.00g286330 vs. NCBI nr
Match:
XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])
HSP 1 Score: 326 bits (836), Expect = 1.85e-111
Identity = 174/198 (87.88%), Postives = 187/198 (94.44%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
ME+KPT++L+LPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT
Sbjct: 1 MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT-- 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
S L+IASPN PS HSTNGVVNGDASSESTNHH DTSSGGG+GSGGALEEARVRY NSVL
Sbjct: 61 -SALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIP+SQ AKA+ESGTSGHASPADQSEIDKLEQHL NLRKEL+ KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195
BLAST of Csor.00g286330 vs. ExPASy TrEMBL
Match:
A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)
HSP 1 Score: 369 bits (948), Expect = 8.48e-129
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLRELVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. ExPASy TrEMBL
Match:
A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)
HSP 1 Score: 369 bits (948), Expect = 8.48e-129
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT
Sbjct: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLRELVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. ExPASy TrEMBL
Match:
A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)
HSP 1 Score: 348 bits (892), Expect = 2.91e-120
Identity = 186/198 (93.94%), Postives = 193/198 (97.47%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT
Sbjct: 1 MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASP+ PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. ExPASy TrEMBL
Match:
A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)
HSP 1 Score: 347 bits (889), Expect = 8.35e-120
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. ExPASy TrEMBL
Match:
A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)
HSP 1 Score: 347 bits (889), Expect = 8.35e-120
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0
Query: 1 MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60
MEEK T VL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATT
Sbjct: 1 MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60
Query: 61 TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120
TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+SSGGGSGSGGALEEARVRYKNSVL
Sbjct: 61 TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120
Query: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180
ALRAILAAIPNSQKAKA+ESGTS HASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
Query: 181 QLRELVADVSTWQSPCSV 198
QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198
BLAST of Csor.00g286330 vs. TAIR 10
Match:
AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )
HSP 1 Score: 177.9 bits (450), Expect = 7.8e-45
Identity = 107/190 (56.32%), Postives = 139/190 (73.16%), Query Frame = 0
Query: 14 TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWST--TSSTATTTTSGLTIASPNA 73
TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST T S+A TTT
Sbjct: 13 TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATTTGS-------- 72
Query: 74 PSSHSTNGVVNGDASS-ESTNHHTDTSSGGGSGSGG--ALEEARVRYKNSVLALRAILAA 133
+ + +V+ DA++ + T+HH++++ GGG G G L+EA +RYKNSV +LRA+LAA
Sbjct: 73 ----NGSALVSADAAAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAA 132
Query: 134 IPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLIDQLRELVAD 193
IPNSQKAKA E +G SP + EI+KLE+ +LR E+ KN+H+K LID+LREL+AD
Sbjct: 133 IPNSQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIAD 189
Query: 194 VSTWQSPCSV 199
+STWQSPCSV
Sbjct: 193 ISTWQSPCSV 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Q9FMV4 | 1.1e-43 | 56.32 | Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O... | [more] |
Match Name | E-value | Identity | Description | |
XP_022921424.1 | 1.75e-128 | 100.00 | mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_... | [more] |
XP_004138044.1 | 6.02e-120 | 93.94 | mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634... | [more] |
XP_008464424.1 | 1.72e-119 | 93.94 | PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]... | [more] |
XP_038879540.1 | 1.08e-115 | 92.42 | mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida] | [more] |
XP_022134927.1 | 1.85e-111 | 87.88 | mediator of RNA polymerase II transcription subunit 30 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1JFZ2 | 8.48e-129 | 100.00 | mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36... | [more] |
A0A6J1E0F5 | 8.48e-129 | 100.00 | mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=... | [more] |
A0A0A0LNW4 | 2.91e-120 | 93.94 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1 | [more] |
A0A5A7USU3 | 8.35e-120 | 93.94 | Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku... | [more] |
A0A1S3CMZ7 | 8.35e-120 | 93.94 | mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G... | [more] |
Match Name | E-value | Identity | Description | |
AT5G63480.1 | 7.8e-45 | 56.32 | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... | [more] |